HEADER STRUCTURAL PROTEIN 05-APR-17 5NM5 TITLE TUBULIN DARPIN ROOM-TEMPERATURE STRUCTURE IN COMPLEX WITH COLCHICINE TITLE 2 DETERMINED BY SERIAL MILLISECOND CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULIN ALPHA-1B CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-TUBULIN UBIQUITOUS,TUBULIN K-ALPHA-1,TUBULIN ALPHA- COMPND 5 UBIQUITOUS CHAIN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUBULIN BETA-2B CHAIN; COMPND 8 CHAIN: B; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) D1; COMPND 11 CHAIN: F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 7 ORGANISM_COMMON: BOVINE; SOURCE 8 ORGANISM_TAXID: 9913; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROOM-TEMPERATURE, SERIAL CRYSTALLOGRAPHY, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.WEINERT,N.OLIERIC,D.JAMES,D.GASHI,P.NOGLY,K.JAEGER,M.O.STEINMETZ, AUTHOR 2 J.STANDFUSS REVDAT 2 17-JAN-24 5NM5 1 REMARK REVDAT 1 27-SEP-17 5NM5 0 JRNL AUTH T.WEINERT,N.OLIERIC,R.CHENG,S.BRUNLE,D.JAMES,D.OZEROV, JRNL AUTH 2 D.GASHI,L.VERA,M.MARSH,K.JAEGER,F.DWORKOWSKI,E.PANEPUCCI, JRNL AUTH 3 S.BASU,P.SKOPINTSEV,A.S.DORE,T.GENG,R.M.COOKE,M.LIANG, JRNL AUTH 4 A.E.PROTA,V.PANNEELS,P.NOGLY,U.ERMLER,G.SCHERTLER,M.HENNIG, JRNL AUTH 5 M.O.STEINMETZ,M.WANG,J.STANDFUSS JRNL TITL SERIAL MILLISECOND CRYSTALLOGRAPHY FOR ROUTINE JRNL TITL 2 ROOM-TEMPERATURE STRUCTURE DETERMINATION AT SYNCHROTRONS. JRNL REF NAT COMMUN V. 8 542 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28912485 JRNL DOI 10.1038/S41467-017-00630-4 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 59100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 2855 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.14 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2519 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2730 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2385 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.32 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 134 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.95630 REMARK 3 B22 (A**2) : -1.96240 REMARK 3 B33 (A**2) : 0.00610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.86430 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.380 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.207 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.178 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 15639 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 28218 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3418 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 217 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 2385 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 15639 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1059 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 17383 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.23 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.73 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 106.1743 27.2814 8.7203 REMARK 3 T TENSOR REMARK 3 T11: -0.0424 T22: -0.2773 REMARK 3 T33: 0.0249 T12: -0.0193 REMARK 3 T13: 0.3054 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.5317 L22: 0.7769 REMARK 3 L33: 1.6512 L12: 0.0458 REMARK 3 L13: -0.9876 L23: -0.1873 REMARK 3 S TENSOR REMARK 3 S11: 0.0954 S12: 0.0102 S13: 0.0076 REMARK 3 S21: -0.0361 S22: 0.0275 S23: -0.0826 REMARK 3 S31: -0.0710 S32: 0.0966 S33: -0.1230 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 79.9965 14.0996 38.2911 REMARK 3 T TENSOR REMARK 3 T11: -0.1241 T22: -0.3265 REMARK 3 T33: -0.0570 T12: 0.0331 REMARK 3 T13: 0.3054 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 3.0653 L22: 1.0766 REMARK 3 L33: 3.1440 L12: 0.3801 REMARK 3 L13: -2.5121 L23: -0.4502 REMARK 3 S TENSOR REMARK 3 S11: -0.2136 S12: -0.2818 S13: -0.3309 REMARK 3 S21: 0.0029 S22: -0.0317 S23: 0.0267 REMARK 3 S31: 0.2316 S32: 0.3124 S33: 0.2454 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { F|* } REMARK 3 ORIGIN FOR THE GROUP (A): 47.6452 17.1093 55.4041 REMARK 3 T TENSOR REMARK 3 T11: -0.1630 T22: -0.2916 REMARK 3 T33: -0.0333 T12: 0.0388 REMARK 3 T13: 0.2972 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.0425 L22: 2.8626 REMARK 3 L33: 5.1996 L12: -0.2476 REMARK 3 L13: -2.3299 L23: 0.7740 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: 0.0226 S13: 0.0569 REMARK 3 S21: -0.0725 S22: -0.0238 S23: 0.0436 REMARK 3 S31: -0.0010 S32: -0.1887 S33: 0.0061 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62424 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 194.5 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DRX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-24% PEG 3350, 0.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M BIS-TRIS METHANE PH5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.51000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 39 REMARK 465 LYS A 40 REMARK 465 THR A 41 REMARK 465 ILE A 42 REMARK 465 GLY A 43 REMARK 465 GLY A 44 REMARK 465 GLY A 45 REMARK 465 ASP A 46 REMARK 465 ALA A 281 REMARK 465 TYR A 282 REMARK 465 LYS A 338 REMARK 465 ARG A 339 REMARK 465 SER A 340 REMARK 465 GLY A 436 REMARK 465 VAL A 437 REMARK 465 ASP A 438 REMARK 465 SER A 439 REMARK 465 VAL A 440 REMARK 465 GLU A 441 REMARK 465 GLY A 442 REMARK 465 GLU A 443 REMARK 465 GLY A 444 REMARK 465 GLU A 445 REMARK 465 GLU A 446 REMARK 465 GLU A 447 REMARK 465 GLY A 448 REMARK 465 GLU A 449 REMARK 465 GLU A 450 REMARK 465 TYR A 451 REMARK 465 MET B 1 REMARK 465 ALA B 56 REMARK 465 THR B 57 REMARK 465 GLY B 58 REMARK 465 ASN B 59 REMARK 465 LYS B 60 REMARK 465 ARG B 278 REMARK 465 GLY B 279 REMARK 465 SER B 280 REMARK 465 GLN B 281 REMARK 465 GLN B 282 REMARK 465 TYR B 283 REMARK 465 ARG B 284 REMARK 465 ALA B 285 REMARK 465 GLU B 442 REMARK 465 GLN B 443 REMARK 465 GLY B 444 REMARK 465 GLU B 445 REMARK 465 PHE B 446 REMARK 465 GLU B 447 REMARK 465 GLU B 448 REMARK 465 GLU B 449 REMARK 465 GLU B 450 REMARK 465 GLY B 451 REMARK 465 GLU B 452 REMARK 465 ASP B 453 REMARK 465 GLU B 454 REMARK 465 ALA B 455 REMARK 465 MET F 1 REMARK 465 ARG F 2 REMARK 465 GLY F 3 REMARK 465 SER F 4 REMARK 465 HIS F 5 REMARK 465 HIS F 6 REMARK 465 HIS F 7 REMARK 465 HIS F 8 REMARK 465 HIS F 9 REMARK 465 HIS F 10 REMARK 465 GLY F 11 REMARK 465 SER F 12 REMARK 465 LEU F 168 REMARK 465 ASN F 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 83 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 HIS A 283 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 THR A 337 OG1 CG2 REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 50 CG OD1 ND2 REMARK 470 GLN B 96 CG CD OE1 NE2 REMARK 470 ARG F 31 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 269 O SER A 379 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 58 -2.12 -57.81 REMARK 500 TYR A 83 30.08 -99.85 REMARK 500 THR A 109 -72.70 -114.82 REMARK 500 SER A 147 -61.07 -93.50 REMARK 500 VAL A 177 74.43 -111.34 REMARK 500 SER A 178 76.83 27.98 REMARK 500 HIS A 309 41.60 -96.96 REMARK 500 ASP A 345 -78.35 -39.96 REMARK 500 THR A 349 64.80 -106.97 REMARK 500 PHE A 404 -1.36 67.53 REMARK 500 HIS B 37 36.52 -151.46 REMARK 500 THR B 109 -94.83 -115.70 REMARK 500 ASN B 339 55.10 -119.79 REMARK 500 ASN B 349 57.27 39.54 REMARK 500 PHE B 404 19.33 55.07 REMARK 500 ASN F 74 31.36 -93.67 REMARK 500 HIS F 135 35.56 -96.83 REMARK 500 GLN F 166 76.06 -100.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 630 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH A 631 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH B 625 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 626 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B 627 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH F 213 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH F 214 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH F 215 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH F 216 DISTANCE = 9.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP A 501 O3G REMARK 620 2 GTP A 501 O2B 83.6 REMARK 620 3 HOH A 602 O 79.4 72.9 REMARK 620 4 HOH A 604 O 92.4 92.1 163.5 REMARK 620 5 HOH A 608 O 159.1 90.8 79.6 108.0 REMARK 620 6 HOH A 609 O 91.8 155.5 82.7 112.1 84.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LOC B 502 DBREF 5NM5 A 1 451 UNP P81947 TBA1B_BOVIN 1 451 DBREF 5NM5 B 1 455 UNP Q6B856 TBB2B_BOVIN 1 445 DBREF 5NM5 F 1 169 PDB 5NM5 5NM5 1 169 SEQRES 1 A 451 MET ARG GLU CYS ILE SER ILE HIS VAL GLY GLN ALA GLY SEQRES 2 A 451 VAL GLN ILE GLY ASN ALA CYS TRP GLU LEU TYR CYS LEU SEQRES 3 A 451 GLU HIS GLY ILE GLN PRO ASP GLY GLN MET PRO SER ASP SEQRES 4 A 451 LYS THR ILE GLY GLY GLY ASP ASP SER PHE ASN THR PHE SEQRES 5 A 451 PHE SER GLU THR GLY ALA GLY LYS HIS VAL PRO ARG ALA SEQRES 6 A 451 VAL PHE VAL ASP LEU GLU PRO THR VAL ILE ASP GLU VAL SEQRES 7 A 451 ARG THR GLY THR TYR ARG GLN LEU PHE HIS PRO GLU GLN SEQRES 8 A 451 LEU ILE THR GLY LYS GLU ASP ALA ALA ASN ASN TYR ALA SEQRES 9 A 451 ARG GLY HIS TYR THR ILE GLY LYS GLU ILE ILE ASP LEU SEQRES 10 A 451 VAL LEU ASP ARG ILE ARG LYS LEU ALA ASP GLN CYS THR SEQRES 11 A 451 GLY LEU GLN GLY PHE LEU VAL PHE HIS SER PHE GLY GLY SEQRES 12 A 451 GLY THR GLY SER GLY PHE THR SER LEU LEU MET GLU ARG SEQRES 13 A 451 LEU SER VAL ASP TYR GLY LYS LYS SER LYS LEU GLU PHE SEQRES 14 A 451 SER ILE TYR PRO ALA PRO GLN VAL SER THR ALA VAL VAL SEQRES 15 A 451 GLU PRO TYR ASN SER ILE LEU THR THR HIS THR THR LEU SEQRES 16 A 451 GLU HIS SER ASP CYS ALA PHE MET VAL ASP ASN GLU ALA SEQRES 17 A 451 ILE TYR ASP ILE CYS ARG ARG ASN LEU ASP ILE GLU ARG SEQRES 18 A 451 PRO THR TYR THR ASN LEU ASN ARG LEU ILE SER GLN ILE SEQRES 19 A 451 VAL SER SER ILE THR ALA SER LEU ARG PHE ASP GLY ALA SEQRES 20 A 451 LEU ASN VAL ASP LEU THR GLU PHE GLN THR ASN LEU VAL SEQRES 21 A 451 PRO TYR PRO ARG ILE HIS PHE PRO LEU ALA THR TYR ALA SEQRES 22 A 451 PRO VAL ILE SER ALA GLU LYS ALA TYR HIS GLU GLN LEU SEQRES 23 A 451 SER VAL ALA GLU ILE THR ASN ALA CYS PHE GLU PRO ALA SEQRES 24 A 451 ASN GLN MET VAL LYS CYS ASP PRO ARG HIS GLY LYS TYR SEQRES 25 A 451 MET ALA CYS CYS LEU LEU TYR ARG GLY ASP VAL VAL PRO SEQRES 26 A 451 LYS ASP VAL ASN ALA ALA ILE ALA THR ILE LYS THR LYS SEQRES 27 A 451 ARG SER ILE GLN PHE VAL ASP TRP CYS PRO THR GLY PHE SEQRES 28 A 451 LYS VAL GLY ILE ASN TYR GLN PRO PRO THR VAL VAL PRO SEQRES 29 A 451 GLY GLY ASP LEU ALA LYS VAL GLN ARG ALA VAL CYS MET SEQRES 30 A 451 LEU SER ASN THR THR ALA ILE ALA GLU ALA TRP ALA ARG SEQRES 31 A 451 LEU ASP HIS LYS PHE ASP LEU MET TYR ALA LYS ARG ALA SEQRES 32 A 451 PHE VAL HIS TRP TYR VAL GLY GLU GLY MET GLU GLU GLY SEQRES 33 A 451 GLU PHE SER GLU ALA ARG GLU ASP MET ALA ALA LEU GLU SEQRES 34 A 451 LYS ASP TYR GLU GLU VAL GLY VAL ASP SER VAL GLU GLY SEQRES 35 A 451 GLU GLY GLU GLU GLU GLY GLU GLU TYR SEQRES 1 B 445 MET ARG GLU ILE VAL HIS ILE GLN ALA GLY GLN CYS GLY SEQRES 2 B 445 ASN GLN ILE GLY ALA LYS PHE TRP GLU VAL ILE SER ASP SEQRES 3 B 445 GLU HIS GLY ILE ASP PRO THR GLY SER TYR HIS GLY ASP SEQRES 4 B 445 SER ASP LEU GLN LEU GLU ARG ILE ASN VAL TYR TYR ASN SEQRES 5 B 445 GLU ALA THR GLY ASN LYS TYR VAL PRO ARG ALA ILE LEU SEQRES 6 B 445 VAL ASP LEU GLU PRO GLY THR MET ASP SER VAL ARG SER SEQRES 7 B 445 GLY PRO PHE GLY GLN ILE PHE ARG PRO ASP ASN PHE VAL SEQRES 8 B 445 PHE GLY GLN SER GLY ALA GLY ASN ASN TRP ALA LYS GLY SEQRES 9 B 445 HIS TYR THR GLU GLY ALA GLU LEU VAL ASP SER VAL LEU SEQRES 10 B 445 ASP VAL VAL ARG LYS GLU SER GLU SER CYS ASP CYS LEU SEQRES 11 B 445 GLN GLY PHE GLN LEU THR HIS SER LEU GLY GLY GLY THR SEQRES 12 B 445 GLY SER GLY MET GLY THR LEU LEU ILE SER LYS ILE ARG SEQRES 13 B 445 GLU GLU TYR PRO ASP ARG ILE MET ASN THR PHE SER VAL SEQRES 14 B 445 MET PRO SER PRO LYS VAL SER ASP THR VAL VAL GLU PRO SEQRES 15 B 445 TYR ASN ALA THR LEU SER VAL HIS GLN LEU VAL GLU ASN SEQRES 16 B 445 THR ASP GLU THR TYR CYS ILE ASP ASN GLU ALA LEU TYR SEQRES 17 B 445 ASP ILE CYS PHE ARG THR LEU LYS LEU THR THR PRO THR SEQRES 18 B 445 TYR GLY ASP LEU ASN HIS LEU VAL SER ALA THR MET SER SEQRES 19 B 445 GLY VAL THR THR CYS LEU ARG PHE PRO GLY GLN LEU ASN SEQRES 20 B 445 ALA ASP LEU ARG LYS LEU ALA VAL ASN MET VAL PRO PHE SEQRES 21 B 445 PRO ARG LEU HIS PHE PHE MET PRO GLY PHE ALA PRO LEU SEQRES 22 B 445 THR SER ARG GLY SER GLN GLN TYR ARG ALA LEU THR VAL SEQRES 23 B 445 PRO GLU LEU THR GLN GLN MET PHE ASP SER LYS ASN MET SEQRES 24 B 445 MET ALA ALA CYS ASP PRO ARG HIS GLY ARG TYR LEU THR SEQRES 25 B 445 VAL ALA ALA ILE PHE ARG GLY ARG MET SER MET LYS GLU SEQRES 26 B 445 VAL ASP GLU GLN MET LEU ASN VAL GLN ASN LYS ASN SER SEQRES 27 B 445 SER TYR PHE VAL GLU TRP ILE PRO ASN ASN VAL LYS THR SEQRES 28 B 445 ALA VAL CYS ASP ILE PRO PRO ARG GLY LEU LYS MET SER SEQRES 29 B 445 ALA THR PHE ILE GLY ASN SER THR ALA ILE GLN GLU LEU SEQRES 30 B 445 PHE LYS ARG ILE SER GLU GLN PHE THR ALA MET PHE ARG SEQRES 31 B 445 ARG LYS ALA PHE LEU HIS TRP TYR THR GLY GLU GLY MET SEQRES 32 B 445 ASP GLU MET GLU PHE THR GLU ALA GLU SER ASN MET ASN SEQRES 33 B 445 ASP LEU VAL SER GLU TYR GLN GLN TYR GLN ASP ALA THR SEQRES 34 B 445 ALA ASP GLU GLN GLY GLU PHE GLU GLU GLU GLU GLY GLU SEQRES 35 B 445 ASP GLU ALA SEQRES 1 F 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 F 169 LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 3 F 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 F 169 VAL ASN ALA THR ASP ALA SER GLY LEU THR PRO LEU HIS SEQRES 5 F 169 LEU ALA ALA THR TYR GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 6 F 169 LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA ILE ASP ILE SEQRES 7 F 169 MET GLY SER THR PRO LEU HIS LEU ALA ALA LEU ILE GLY SEQRES 8 F 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS HIS GLY ALA SEQRES 9 F 169 ASP VAL ASN ALA VAL ASP THR TRP GLY ASP THR PRO LEU SEQRES 10 F 169 HIS LEU ALA ALA ILE MET GLY HIS LEU GLU ILE VAL GLU SEQRES 11 F 169 VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 12 F 169 LYS PHE GLY LYS THR ALA PHE ASP ILE SER ILE ASP ASN SEQRES 13 F 169 GLY ASN GLU ASP LEU ALA GLU ILE LEU GLN LYS LEU ASN HET GTP A 501 44 HET MG A 502 1 HET GDP B 501 40 HET LOC B 502 54 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM LOC N-[(7S)-1,2,3,10-TETRAMETHOXY-9-OXO-6,7-DIHYDRO-5H- HETNAM 2 LOC BENZO[D]HEPTALEN-7-YL]ETHANAMIDE HETSYN LOC COLCHICINE FORMUL 4 GTP C10 H16 N5 O14 P3 FORMUL 5 MG MG 2+ FORMUL 6 GDP C10 H15 N5 O11 P2 FORMUL 7 LOC C22 H25 N O6 FORMUL 8 HOH *74(H2 O) HELIX 1 AA1 GLY A 10 GLY A 29 1 20 HELIX 2 AA2 ASP A 47 THR A 51 5 5 HELIX 3 AA3 PRO A 72 THR A 80 1 9 HELIX 4 AA4 HIS A 88 GLU A 90 5 3 HELIX 5 AA5 ASN A 102 TYR A 108 1 7 HELIX 6 AA6 THR A 109 GLU A 113 5 5 HELIX 7 AA7 ILE A 114 GLN A 128 1 15 HELIX 8 AA8 GLY A 143 TYR A 161 1 19 HELIX 9 AA9 VAL A 182 LEU A 195 1 14 HELIX 10 AB1 ASN A 206 LEU A 217 1 12 HELIX 11 AB2 THR A 223 PHE A 244 1 22 HELIX 12 AB3 ASP A 251 VAL A 260 1 10 HELIX 13 AB4 SER A 287 CYS A 295 1 9 HELIX 14 AB5 PHE A 296 GLN A 301 5 6 HELIX 15 AB6 ASP A 306 GLY A 310 5 5 HELIX 16 AB7 VAL A 324 THR A 337 1 14 HELIX 17 AB8 ILE A 384 LYS A 401 1 18 HELIX 18 AB9 PHE A 404 GLY A 410 1 7 HELIX 19 AC1 GLU A 414 VAL A 435 1 22 HELIX 20 AC2 GLY B 10 HIS B 28 1 19 HELIX 21 AC3 SER B 40 ARG B 48 1 7 HELIX 22 AC4 ILE B 49 VAL B 51 5 3 HELIX 23 AC5 PRO B 72 GLY B 81 1 10 HELIX 24 AC6 ARG B 88 ASP B 90 5 3 HELIX 25 AC7 ASN B 102 THR B 109 1 8 HELIX 26 AC8 THR B 109 SER B 128 1 20 HELIX 27 AC9 GLY B 144 TYR B 161 1 18 HELIX 28 AD1 VAL B 182 THR B 198 1 17 HELIX 29 AD2 ASN B 206 THR B 216 1 11 HELIX 30 AD3 THR B 223 THR B 239 1 17 HELIX 31 AD4 THR B 239 PHE B 244 1 6 HELIX 32 AD5 ASP B 251 VAL B 260 1 10 HELIX 33 AD6 THR B 287 MET B 295 1 9 HELIX 34 AD7 PHE B 296 MET B 301 5 6 HELIX 35 AD8 ASP B 306 GLY B 310 5 5 HELIX 36 AD9 SER B 324 ASN B 339 1 16 HELIX 37 AE1 SER B 340 PHE B 343 5 4 HELIX 38 AE2 ILE B 384 ARG B 401 1 18 HELIX 39 AE3 PHE B 404 GLY B 410 1 7 HELIX 40 AE4 GLU B 415 ASP B 437 1 23 HELIX 41 AE5 LEU F 14 GLY F 25 1 12 HELIX 42 AE6 GLN F 26 ASN F 36 1 11 HELIX 43 AE7 THR F 49 TYR F 57 1 9 HELIX 44 AE8 HIS F 59 HIS F 69 1 11 HELIX 45 AE9 THR F 82 GLY F 91 1 10 HELIX 46 AF1 HIS F 92 HIS F 102 1 11 HELIX 47 AF2 THR F 115 GLY F 124 1 10 HELIX 48 AF3 HIS F 125 HIS F 135 1 11 HELIX 49 AF4 THR F 148 ASN F 156 1 9 HELIX 50 AF5 ASN F 158 LEU F 165 1 8 SHEET 1 AA1 6 LEU A 92 THR A 94 0 SHEET 2 AA1 6 ALA A 65 ASP A 69 1 N PHE A 67 O ILE A 93 SHEET 3 AA1 6 CYS A 4 VAL A 9 1 N HIS A 8 O VAL A 66 SHEET 4 AA1 6 GLY A 134 SER A 140 1 O LEU A 136 N ILE A 7 SHEET 5 AA1 6 SER A 165 TYR A 172 1 O PHE A 169 N VAL A 137 SHEET 6 AA1 6 CYS A 200 ASP A 205 1 O PHE A 202 N GLU A 168 SHEET 1 AA2 2 PHE A 53 GLU A 55 0 SHEET 2 AA2 2 HIS A 61 PRO A 63 -1 O VAL A 62 N SER A 54 SHEET 1 AA3 4 LEU A 269 ALA A 273 0 SHEET 2 AA3 4 ARG A 373 THR A 381 -1 O SER A 379 N LEU A 269 SHEET 3 AA3 4 TYR A 312 GLY A 321 -1 N ARG A 320 O ALA A 374 SHEET 4 AA3 4 LYS A 352 ASN A 356 1 O GLY A 354 N TYR A 319 SHEET 1 AA410 PHE B 92 PHE B 94 0 SHEET 2 AA410 ALA B 65 ASP B 69 1 N LEU B 67 O VAL B 93 SHEET 3 AA410 GLU B 3 ALA B 9 1 N HIS B 6 O ILE B 66 SHEET 4 AA410 LEU B 132 SER B 140 1 O GLN B 133 N GLU B 3 SHEET 5 AA410 ILE B 165 MET B 172 1 O ILE B 165 N PHE B 135 SHEET 6 AA410 GLU B 200 ASP B 205 1 O TYR B 202 N THR B 168 SHEET 7 AA410 PHE B 267 ALA B 273 1 O PHE B 268 N THR B 201 SHEET 8 AA410 MET B 373 SER B 381 -1 O PHE B 377 N GLY B 271 SHEET 9 AA410 TYR B 312 GLY B 321 -1 N LEU B 313 O ASN B 380 SHEET 10 AA410 VAL B 351 CYS B 356 1 O CYS B 356 N PHE B 319 SHEET 1 AA5 2 TYR B 53 ASN B 54 0 SHEET 2 AA5 2 VAL B 62 PRO B 63 -1 O VAL B 62 N ASN B 54 LINK O3G GTP A 501 MG MG A 502 1555 1555 2.06 LINK O2B GTP A 501 MG MG A 502 1555 1555 2.32 LINK MG MG A 502 O HOH A 602 1555 1555 2.08 LINK MG MG A 502 O HOH A 604 1555 1555 2.02 LINK MG MG A 502 O HOH A 608 1555 1555 2.05 LINK MG MG A 502 O HOH A 609 1555 1555 2.04 CISPEP 1 ALA A 273 PRO A 274 0 0.88 CISPEP 2 ALA B 273 PRO B 274 0 -0.94 SITE 1 AC1 26 GLY A 10 GLN A 11 ALA A 12 GLN A 15 SITE 2 AC1 26 ASP A 98 ALA A 99 ASN A 101 SER A 140 SITE 3 AC1 26 GLY A 143 GLY A 144 THR A 145 GLY A 146 SITE 4 AC1 26 VAL A 177 SER A 178 GLU A 183 ASN A 206 SITE 5 AC1 26 TYR A 224 ASN A 228 ILE A 231 MG A 502 SITE 6 AC1 26 HOH A 602 HOH A 604 HOH A 605 HOH A 607 SITE 7 AC1 26 HOH A 609 LYS B 254 SITE 1 AC2 6 GTP A 501 HOH A 602 HOH A 604 HOH A 608 SITE 2 AC2 6 HOH A 609 LYS B 254 SITE 1 AC3 19 GLY B 10 GLN B 11 CYS B 12 GLN B 15 SITE 2 AC3 19 SER B 140 GLY B 143 GLY B 144 THR B 145 SITE 3 AC3 19 GLY B 146 VAL B 177 SER B 178 GLU B 183 SITE 4 AC3 19 ASN B 206 TYR B 224 LEU B 227 ASN B 228 SITE 5 AC3 19 HOH B 601 HOH B 602 HOH B 603 SITE 1 AC4 15 SER A 178 ALA A 180 VAL A 181 CYS B 241 SITE 2 AC4 15 LEU B 248 ALA B 250 LYS B 254 LEU B 255 SITE 3 AC4 15 ASN B 258 VAL B 315 ALA B 316 ILE B 318 SITE 4 AC4 15 ASN B 350 LYS B 352 ILE B 378 CRYST1 72.920 85.020 84.340 90.00 97.32 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013714 0.000000 0.001762 0.00000 SCALE2 0.000000 0.011762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011954 0.00000