HEADER PROTEIN TRANSPORT 07-APR-17 5NMR TITLE MONOMERIC MOUSE SORTILIN EXTRACELLULAR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTILIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEUROTENSIN RECEPTOR 3,MNTR3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SORT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS VPS10 DOMAIN FAMILY, SORTING RECEPTOR, TEN-BLADED BETA PROPELLER, KEYWDS 2 10CC DOMAIN, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.O.L.LELOUP,P.LOESSL,D.H.M.MEIJER,A.J.R.HECK,D.M.E.THIES-WEESIE, AUTHOR 2 B.J.C.JANSSEN REVDAT 4 17-JAN-24 5NMR 1 HETSYN REVDAT 3 29-JUL-20 5NMR 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 16-OCT-19 5NMR 1 REMARK REVDAT 1 06-DEC-17 5NMR 0 JRNL AUTH N.LELOUP,P.LOSSL,D.H.MEIJER,M.BRENNICH,A.J.R.HECK, JRNL AUTH 2 D.M.E.THIES-WEESIE,B.J.C.JANSSEN JRNL TITL LOW PH-INDUCED CONFORMATIONAL CHANGE AND DIMERIZATION OF JRNL TITL 2 SORTILIN TRIGGERS ENDOCYTOSED LIGAND RELEASE. JRNL REF NAT COMMUN V. 8 1708 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29167428 JRNL DOI 10.1038/S41467-017-01485-5 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11_2567: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 46656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 2236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.0261 - 5.2909 0.97 2876 151 0.1832 0.1947 REMARK 3 2 5.2909 - 4.1997 0.96 2757 149 0.1558 0.1923 REMARK 3 3 4.1997 - 3.6689 0.99 2839 157 0.1784 0.2061 REMARK 3 4 3.6689 - 3.3335 0.96 2786 127 0.1958 0.2205 REMARK 3 5 3.3335 - 3.0946 0.97 2781 124 0.2149 0.2309 REMARK 3 6 3.0946 - 2.9121 0.98 2791 148 0.2179 0.2658 REMARK 3 7 2.9121 - 2.7663 0.99 2828 130 0.2203 0.2575 REMARK 3 8 2.7663 - 2.6458 0.98 2777 140 0.2249 0.2793 REMARK 3 9 2.6458 - 2.5440 0.94 2677 125 0.2256 0.2680 REMARK 3 10 2.5440 - 2.4562 0.98 2795 141 0.2288 0.2964 REMARK 3 11 2.4562 - 2.3794 0.98 2785 143 0.2227 0.2767 REMARK 3 12 2.3794 - 2.3114 0.99 2800 137 0.2225 0.2748 REMARK 3 13 2.3114 - 2.2505 0.99 2796 133 0.2247 0.2889 REMARK 3 14 2.2505 - 2.1956 0.99 2838 150 0.2340 0.2797 REMARK 3 15 2.1956 - 2.1457 0.92 2546 149 0.2348 0.2405 REMARK 3 16 2.1457 - 2.1000 0.96 2748 132 0.2497 0.3160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4825 REMARK 3 ANGLE : 1.470 6535 REMARK 3 CHIRALITY : 0.075 722 REMARK 3 PLANARITY : 0.003 836 REMARK 3 DIHEDRAL : 10.444 2824 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 572) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7422 28.4048 95.4485 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1858 REMARK 3 T33: 0.1392 T12: 0.0140 REMARK 3 T13: -0.0592 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.0168 L22: 1.1403 REMARK 3 L33: 0.9626 L12: 0.4938 REMARK 3 L13: -0.5678 L23: -0.1474 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: -0.1215 S13: -0.0529 REMARK 3 S21: 0.0510 S22: -0.0482 S23: -0.1077 REMARK 3 S31: -0.0416 S32: 0.1729 S33: -0.0120 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 573 THROUGH 722 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8067 24.0997 73.8425 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.3539 REMARK 3 T33: 0.2578 T12: 0.0373 REMARK 3 T13: -0.0493 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.1961 L22: 2.0658 REMARK 3 L33: 1.7543 L12: 0.8354 REMARK 3 L13: 0.3799 L23: 0.7384 REMARK 3 S TENSOR REMARK 3 S11: -0.2729 S12: 0.4986 S13: -0.0132 REMARK 3 S21: -0.5619 S22: 0.2653 S23: 0.2602 REMARK 3 S31: 0.1254 S32: -0.1355 S33: 0.0014 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46680 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 66.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3F6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA HEPES PH 7.5, 1 MM CACL2 AND REMARK 280 25% PEG 2000 MME (W/V)., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 100.29000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 100.29000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 PRO A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 PRO A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 ARG A 16 REMARK 465 TRP A 17 REMARK 465 ALA A 18 REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 VAL A 21 REMARK 465 GLY A 22 REMARK 465 VAL A 23 REMARK 465 SER A 24 REMARK 465 TRP A 25 REMARK 465 GLY A 26 REMARK 465 LEU A 27 REMARK 465 ARG A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 PRO A 35 REMARK 465 VAL A 36 REMARK 465 PRO A 37 REMARK 465 ARG A 38 REMARK 465 ALA A 39 REMARK 465 GLY A 40 REMARK 465 ARG A 41 REMARK 465 TRP A 42 REMARK 465 ARG A 43 REMARK 465 ARG A 44 REMARK 465 GLY A 45 REMARK 465 ALA A 46 REMARK 465 PRO A 47 REMARK 465 ALA A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 GLN A 51 REMARK 465 ASP A 52 REMARK 465 VAL A 99 REMARK 465 PRO A 100 REMARK 465 LEU A 101 REMARK 465 VAL A 102 REMARK 465 ILE A 103 REMARK 465 VAL A 104 REMARK 465 SER A 105 REMARK 465 PHE A 106 REMARK 465 ALA A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 LYS A 420 REMARK 465 ASN A 421 REMARK 465 LYS A 422 REMARK 465 ASN A 423 REMARK 465 PHE A 644 REMARK 465 GLY A 645 REMARK 465 TYR A 646 REMARK 465 PHE A 647 REMARK 465 ARG A 648 REMARK 465 PRO A 649 REMARK 465 GLU A 650 REMARK 465 ASN A 651 REMARK 465 ALA A 652 REMARK 465 SER A 653 REMARK 465 GLU A 654 REMARK 465 CYS A 655 REMARK 465 VAL A 656 REMARK 465 GLU A 657 REMARK 465 GLN A 658 REMARK 465 PRO A 659 REMARK 465 GLU A 660 REMARK 465 LEU A 661 REMARK 465 LYS A 662 REMARK 465 GLY A 663 REMARK 465 HIS A 664 REMARK 465 GLU A 665 REMARK 465 LEU A 666 REMARK 465 GLU A 667 REMARK 465 PHE A 668 REMARK 465 CYS A 669 REMARK 465 LEU A 670 REMARK 465 TYR A 671 REMARK 465 GLY A 672 REMARK 465 LYS A 673 REMARK 465 GLU A 674 REMARK 465 GLU A 675 REMARK 465 HIS A 676 REMARK 465 LEU A 677 REMARK 465 THR A 678 REMARK 465 THR A 679 REMARK 465 ASN A 680 REMARK 465 GLY A 681 REMARK 465 PRO A 696 REMARK 465 ALA A 697 REMARK 465 ARG A 698 REMARK 465 GLU A 699 REMARK 465 VAL A 700 REMARK 465 LYS A 701 REMARK 465 ASP A 702 REMARK 465 LEU A 703 REMARK 465 LYS A 704 REMARK 465 LYS A 705 REMARK 465 LYS A 706 REMARK 465 CYS A 707 REMARK 465 THR A 708 REMARK 465 SER A 709 REMARK 465 ASN A 710 REMARK 465 PHE A 711 REMARK 465 LEU A 712 REMARK 465 ASN A 713 REMARK 465 PRO A 714 REMARK 465 THR A 715 REMARK 465 LYS A 716 REMARK 465 GLN A 717 REMARK 465 ASN A 718 REMARK 465 SER A 719 REMARK 465 LYS A 720 REMARK 465 SER A 721 REMARK 465 ASN A 722 REMARK 465 ALA A 723 REMARK 465 ALA A 724 REMARK 465 ALA A 725 REMARK 465 HIS A 726 REMARK 465 HIS A 727 REMARK 465 HIS A 728 REMARK 465 HIS A 729 REMARK 465 HIS A 730 REMARK 465 HIS A 731 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 35.46 -85.52 REMARK 500 GLU A 144 -136.96 55.56 REMARK 500 VAL A 240 -63.09 -102.26 REMARK 500 ASP A 337 59.16 -90.58 REMARK 500 TYR A 362 100.95 -162.79 REMARK 500 ALA A 431 -142.10 -138.65 REMARK 500 ASN A 512 20.38 -146.65 REMARK 500 SER A 558 -166.57 -110.69 REMARK 500 LEU A 575 69.71 -100.25 REMARK 500 ASP A 593 96.41 -162.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 807 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 333 OD1 REMARK 620 2 ASP A 333 OD2 53.7 REMARK 620 3 GLU A 334 O 87.3 83.1 REMARK 620 4 GLY A 336 O 155.1 151.2 94.6 REMARK 620 5 HOH A 980 O 128.4 75.2 94.2 76.4 REMARK 620 6 HOH A1020 O 72.5 125.0 84.0 82.9 159.0 REMARK 620 7 HOH A1103 O 87.0 95.1 173.9 89.7 91.0 92.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 806 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 518 O REMARK 620 2 SER A 616 O 123.2 REMARK 620 3 HOH A1063 O 99.1 126.6 REMARK 620 4 HOH A1066 O 98.0 87.0 120.3 REMARK 620 N 1 2 3 DBREF 5NMR A 1 722 UNP Q6PHU5 SORT_MOUSE 32 753 SEQADV 5NMR ALA A 723 UNP Q6PHU5 EXPRESSION TAG SEQADV 5NMR ALA A 724 UNP Q6PHU5 EXPRESSION TAG SEQADV 5NMR ALA A 725 UNP Q6PHU5 EXPRESSION TAG SEQADV 5NMR HIS A 726 UNP Q6PHU5 EXPRESSION TAG SEQADV 5NMR HIS A 727 UNP Q6PHU5 EXPRESSION TAG SEQADV 5NMR HIS A 728 UNP Q6PHU5 EXPRESSION TAG SEQADV 5NMR HIS A 729 UNP Q6PHU5 EXPRESSION TAG SEQADV 5NMR HIS A 730 UNP Q6PHU5 EXPRESSION TAG SEQADV 5NMR HIS A 731 UNP Q6PHU5 EXPRESSION TAG SEQRES 1 A 731 GLN ASP ARG LEU ASP ALA PRO PRO PRO PRO ALA PRO PRO SEQRES 2 A 731 LEU LEU ARG TRP ALA GLY PRO VAL GLY VAL SER TRP GLY SEQRES 3 A 731 LEU ARG ALA ALA ALA PRO GLY GLY PRO VAL PRO ARG ALA SEQRES 4 A 731 GLY ARG TRP ARG ARG GLY ALA PRO ALA GLU ASP GLN ASP SEQRES 5 A 731 CYS GLY ARG LEU PRO ASP PHE ILE ALA LYS LEU THR ASN SEQRES 6 A 731 ASN THR HIS GLN HIS VAL PHE ASP ASP LEU SER GLY SER SEQRES 7 A 731 VAL SER LEU SER TRP VAL GLY ASP SER THR GLY VAL ILE SEQRES 8 A 731 LEU VAL LEU THR THR PHE GLN VAL PRO LEU VAL ILE VAL SEQRES 9 A 731 SER PHE GLY GLN SER LYS LEU TYR ARG SER GLU ASP TYR SEQRES 10 A 731 GLY LYS ASN PHE LYS ASP ILE THR ASN LEU ILE ASN ASN SEQRES 11 A 731 THR PHE ILE ARG THR GLU PHE GLY MET ALA ILE GLY PRO SEQRES 12 A 731 GLU ASN SER GLY LYS VAL ILE LEU THR ALA GLU VAL SER SEQRES 13 A 731 GLY GLY SER ARG GLY GLY ARG VAL PHE ARG SER SER ASP SEQRES 14 A 731 PHE ALA LYS ASN PHE VAL GLN THR ASP LEU PRO PHE HIS SEQRES 15 A 731 PRO LEU THR GLN MET MET TYR SER PRO GLN ASN SER ASP SEQRES 16 A 731 TYR LEU LEU ALA LEU SER THR GLU ASN GLY LEU TRP VAL SEQRES 17 A 731 SER LYS ASN PHE GLY GLU LYS TRP GLU GLU ILE HIS LYS SEQRES 18 A 731 ALA VAL CYS LEU ALA LYS TRP GLY PRO ASN ASN ILE ILE SEQRES 19 A 731 PHE PHE THR THR HIS VAL ASN GLY SER CYS LYS ALA ASP SEQRES 20 A 731 LEU GLY ALA LEU GLU LEU TRP ARG THR SER ASP LEU GLY SEQRES 21 A 731 LYS THR PHE LYS THR ILE GLY VAL LYS ILE TYR SER PHE SEQRES 22 A 731 GLY LEU GLY GLY ARG PHE LEU PHE ALA SER VAL MET ALA SEQRES 23 A 731 ASP LYS ASP THR THR ARG ARG ILE HIS VAL SER THR ASP SEQRES 24 A 731 GLN GLY ASP THR TRP SER MET ALA GLN LEU PRO SER VAL SEQRES 25 A 731 GLY GLN GLU GLN PHE TYR SER ILE LEU ALA ALA ASN GLU SEQRES 26 A 731 ASP MET VAL PHE MET HIS VAL ASP GLU PRO GLY ASP THR SEQRES 27 A 731 GLY PHE GLY THR ILE PHE THR SER ASP ASP ARG GLY ILE SEQRES 28 A 731 VAL TYR SER LYS SER LEU ASP ARG HIS LEU TYR THR THR SEQRES 29 A 731 THR GLY GLY GLU THR ASP PHE THR ASN VAL THR SER LEU SEQRES 30 A 731 ARG GLY VAL TYR ILE THR SER THR LEU SER GLU ASP ASN SEQRES 31 A 731 SER ILE GLN SER MET ILE THR PHE ASP GLN GLY GLY ARG SEQRES 32 A 731 TRP GLU HIS LEU ARG LYS PRO GLU ASN SER LYS CYS ASP SEQRES 33 A 731 ALA THR ALA LYS ASN LYS ASN GLU CYS SER LEU HIS ILE SEQRES 34 A 731 HIS ALA SER TYR SER ILE SER GLN LYS LEU ASN VAL PRO SEQRES 35 A 731 MET ALA PRO LEU SER GLU PRO ASN ALA VAL GLY ILE VAL SEQRES 36 A 731 ILE ALA HIS GLY SER VAL GLY ASP ALA ILE SER VAL MET SEQRES 37 A 731 VAL PRO ASP VAL TYR ILE SER ASP ASP GLY GLY TYR SER SEQRES 38 A 731 TRP ALA LYS MET LEU GLU GLY PRO HIS TYR TYR THR ILE SEQRES 39 A 731 LEU ASP SER GLY GLY ILE ILE VAL ALA ILE GLU HIS SER SEQRES 40 A 731 ASN ARG PRO ILE ASN VAL ILE LYS PHE SER THR ASP GLU SEQRES 41 A 731 GLY GLN CYS TRP GLN SER TYR VAL PHE THR GLN GLU PRO SEQRES 42 A 731 ILE TYR PHE THR GLY LEU ALA SER GLU PRO GLY ALA ARG SEQRES 43 A 731 SER MET ASN ILE SER ILE TRP GLY PHE THR GLU SER PHE SEQRES 44 A 731 ILE THR ARG GLN TRP VAL SER TYR THR VAL ASP PHE LYS SEQRES 45 A 731 ASP ILE LEU GLU ARG ASN CYS GLU GLU ASP ASP TYR THR SEQRES 46 A 731 THR TRP LEU ALA HIS SER THR ASP PRO GLY ASP TYR LYS SEQRES 47 A 731 ASP GLY CYS ILE LEU GLY TYR LYS GLU GLN PHE LEU ARG SEQRES 48 A 731 LEU ARG LYS SER SER VAL CYS GLN ASN GLY ARG ASP TYR SEQRES 49 A 731 VAL VAL ALA LYS GLN PRO SER VAL CYS PRO CYS SER LEU SEQRES 50 A 731 GLU ASP PHE LEU CYS ASP PHE GLY TYR PHE ARG PRO GLU SEQRES 51 A 731 ASN ALA SER GLU CYS VAL GLU GLN PRO GLU LEU LYS GLY SEQRES 52 A 731 HIS GLU LEU GLU PHE CYS LEU TYR GLY LYS GLU GLU HIS SEQRES 53 A 731 LEU THR THR ASN GLY TYR ARG LYS ILE PRO GLY ASP LYS SEQRES 54 A 731 CYS GLN GLY GLY MET ASN PRO ALA ARG GLU VAL LYS ASP SEQRES 55 A 731 LEU LYS LYS LYS CYS THR SER ASN PHE LEU ASN PRO THR SEQRES 56 A 731 LYS GLN ASN SER LYS SER ASN ALA ALA ALA HIS HIS HIS SEQRES 57 A 731 HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG A 801 14 HET CA A 806 1 HET CA A 807 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *226(H2 O) HELIX 1 AA1 ILE A 60 ASN A 65 1 6 HELIX 2 AA2 THR A 125 ASN A 129 5 5 HELIX 3 AA3 ARG A 134 PHE A 137 5 4 HELIX 4 AA4 PRO A 230 ASN A 232 5 3 HELIX 5 AA5 ALA A 431 GLN A 437 1 7 HELIX 6 AA6 ASP A 496 GLY A 499 5 4 HELIX 7 AA7 GLU A 580 ASP A 582 5 3 HELIX 8 AA8 SER A 636 GLU A 638 5 3 SHEET 1 AA1 4 THR A 67 PHE A 72 0 SHEET 2 AA1 4 ARG A 562 ASP A 570 -1 O TRP A 564 N PHE A 72 SHEET 3 AA1 4 ASN A 549 GLU A 557 -1 N THR A 556 O GLN A 563 SHEET 4 AA1 4 TYR A 535 ALA A 540 -1 N ALA A 540 O SER A 551 SHEET 1 AA2 4 SER A 78 VAL A 84 0 SHEET 2 AA2 4 VAL A 90 PHE A 97 -1 O LEU A 92 N SER A 82 SHEET 3 AA2 4 GLN A 108 SER A 114 -1 O TYR A 112 N VAL A 93 SHEET 4 AA2 4 LYS A 122 ASP A 123 -1 O LYS A 122 N ARG A 113 SHEET 1 AA3 4 MET A 139 ILE A 141 0 SHEET 2 AA3 4 VAL A 149 ALA A 153 -1 O ILE A 150 N ALA A 140 SHEET 3 AA3 4 ARG A 163 SER A 167 -1 O SER A 167 N VAL A 149 SHEET 4 AA3 4 VAL A 175 ASP A 178 -1 O THR A 177 N VAL A 164 SHEET 1 AA4 4 MET A 188 SER A 190 0 SHEET 2 AA4 4 ASN A 193 LEU A 200 -1 O LEU A 198 N MET A 188 SHEET 3 AA4 4 LEU A 206 SER A 209 -1 O TRP A 207 N ALA A 199 SHEET 4 AA4 4 GLU A 217 HIS A 220 -1 O HIS A 220 N LEU A 206 SHEET 1 AA5 7 VAL A 223 TRP A 228 0 SHEET 2 AA5 7 ILE A 234 THR A 238 -1 O PHE A 235 N LYS A 227 SHEET 3 AA5 7 LEU A 251 THR A 256 -1 O TRP A 254 N PHE A 236 SHEET 4 AA5 7 LYS A 264 GLY A 276 -1 O ILE A 270 N LEU A 251 SHEET 5 AA5 7 PHE A 279 MET A 285 -1 O SER A 283 N TYR A 271 SHEET 6 AA5 7 ARG A 292 SER A 297 -1 O HIS A 295 N ALA A 282 SHEET 7 AA5 7 SER A 305 MET A 306 -1 O SER A 305 N VAL A 296 SHEET 1 AA6 4 TYR A 318 ALA A 323 0 SHEET 2 AA6 4 VAL A 328 ASP A 333 -1 O HIS A 331 N SER A 319 SHEET 3 AA6 4 PHE A 340 SER A 346 -1 O PHE A 344 N MET A 330 SHEET 4 AA6 4 TYR A 353 LEU A 361 -1 O SER A 356 N ILE A 343 SHEET 1 AA7 4 THR A 372 ASN A 373 0 SHEET 2 AA7 4 TYR A 381 LEU A 386 -1 O ILE A 382 N THR A 372 SHEET 3 AA7 4 ILE A 392 THR A 397 -1 O MET A 395 N THR A 383 SHEET 4 AA7 4 GLU A 405 HIS A 406 -1 O GLU A 405 N ILE A 396 SHEET 1 AA8 4 SER A 426 ILE A 429 0 SHEET 2 AA8 4 VAL A 455 GLY A 462 -1 O GLY A 462 N SER A 426 SHEET 3 AA8 4 ASP A 471 SER A 475 -1 O TYR A 473 N ALA A 457 SHEET 4 AA8 4 ALA A 483 LEU A 486 -1 O MET A 485 N VAL A 472 SHEET 1 AA9 4 HIS A 490 LEU A 495 0 SHEET 2 AA9 4 ILE A 500 GLU A 505 -1 O ILE A 500 N LEU A 495 SHEET 3 AA9 4 VAL A 513 SER A 517 -1 O LYS A 515 N ALA A 503 SHEET 4 AA9 4 GLN A 525 VAL A 528 -1 O TYR A 527 N ILE A 514 SHEET 1 AB1 3 TYR A 584 LEU A 588 0 SHEET 2 AB1 3 TYR A 605 LEU A 612 -1 O PHE A 609 N TRP A 587 SHEET 3 AB1 3 LYS A 628 VAL A 632 -1 O SER A 631 N LYS A 606 SHEET 1 AB2 2 PHE A 640 LEU A 641 0 SHEET 2 AB2 2 ARG A 683 LYS A 684 -1 O ARG A 683 N LEU A 641 SSBOND 1 CYS A 53 CYS A 523 1555 1555 2.03 SSBOND 2 CYS A 224 CYS A 244 1555 1555 2.03 SSBOND 3 CYS A 415 CYS A 425 1555 1555 2.03 SSBOND 4 CYS A 579 CYS A 618 1555 1555 2.04 SSBOND 5 CYS A 601 CYS A 633 1555 1555 2.03 SSBOND 6 CYS A 635 CYS A 690 1555 1555 2.05 LINK ND2 ASN A 129 C1 NAG A 801 1555 1555 1.44 LINK ND2 ASN A 373 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 549 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK OD1 ASP A 333 CA CA A 807 1555 1555 2.46 LINK OD2 ASP A 333 CA CA A 807 1555 1555 2.38 LINK O GLU A 334 CA CA A 807 1555 1555 2.31 LINK O GLY A 336 CA CA A 807 1555 1555 2.35 LINK O THR A 518 CA CA A 806 1555 1555 2.34 LINK O SER A 616 CA CA A 806 1555 1555 2.34 LINK CA CA A 806 O HOH A1063 1555 1555 2.41 LINK CA CA A 806 O HOH A1066 1555 1555 2.43 LINK CA CA A 807 O HOH A 980 1555 1555 2.40 LINK CA CA A 807 O HOH A1020 1555 1555 2.39 LINK CA CA A 807 O HOH A1103 1555 1555 2.37 CRYST1 200.580 62.570 67.310 90.00 101.35 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004986 0.000000 0.001001 0.00000 SCALE2 0.000000 0.015982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015153 0.00000