HEADER HYDROLASE 10-APR-17 5NNY TITLE CRYSTAL STRUCTURE OF THE PHOSPHATASE DOMAIN FROM THE LEGIONELLA TITLE 2 EFFECTOR WIPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: WIPB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PHOSPHATASE DOMAIN, UNP RESIDUES 25-344; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: WIPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEGIONELLA EFFECTOR, SERINE/THREONINE PHOSPHATASE, PHOSPHOESTERASE KEYWDS 2 FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.PINOTSIS,G.WAKSMAN,M.S.PREVOST REVDAT 2 17-JAN-24 5NNY 1 REMARK REVDAT 1 06-SEP-17 5NNY 0 JRNL AUTH M.S.PREVOST,N.PINOTSIS,M.DUMOUX,R.D.HAYWARD,G.WAKSMAN JRNL TITL THE LEGIONELLA EFFECTOR WIPB IS A TRANSLOCATED SER/THR JRNL TITL 2 PHOSPHATASE THAT TARGETS THE HOST LYSOSOMAL NUTRIENT SENSING JRNL TITL 3 MACHINERY. JRNL REF SCI REP V. 7 9450 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28842705 JRNL DOI 10.1038/S41598-017-10249-6 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.PINOTSIS,G.WAKSMAN,M.S.PREVOST REMARK 1 TITL STRUCTURE OF WIPA REVEALS A NOVEL TYROSINE PROTEIN REMARK 1 TITL 2 PHOSPHATASE EFFECTOR FROM LEGIONELLA PNEUMOPHILA REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 66191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 3204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8517 - 4.8331 0.99 2821 141 0.1888 0.1856 REMARK 3 2 4.8331 - 3.8367 0.99 2747 141 0.1505 0.1981 REMARK 3 3 3.8367 - 3.3518 0.99 2752 139 0.1571 0.1627 REMARK 3 4 3.3518 - 3.0454 1.00 2776 143 0.1729 0.1522 REMARK 3 5 3.0454 - 2.8272 0.99 2734 136 0.1748 0.2184 REMARK 3 6 2.8272 - 2.6605 1.00 2752 140 0.1739 0.2039 REMARK 3 7 2.6605 - 2.5272 1.00 2761 143 0.1774 0.2365 REMARK 3 8 2.5272 - 2.4172 1.00 2759 136 0.1779 0.2262 REMARK 3 9 2.4172 - 2.3242 1.00 2742 141 0.1779 0.2374 REMARK 3 10 2.3242 - 2.2440 0.99 2718 138 0.1700 0.2304 REMARK 3 11 2.2440 - 2.1738 1.00 2742 137 0.1720 0.2371 REMARK 3 12 2.1738 - 2.1117 1.00 2790 139 0.1864 0.2547 REMARK 3 13 2.1117 - 2.0561 1.00 2720 139 0.1945 0.2224 REMARK 3 14 2.0561 - 2.0059 1.00 2751 139 0.2014 0.2483 REMARK 3 15 2.0059 - 1.9603 1.00 2745 134 0.2223 0.2698 REMARK 3 16 1.9603 - 1.9186 0.99 2710 136 0.2368 0.2898 REMARK 3 17 1.9186 - 1.8802 0.99 2762 129 0.2586 0.3030 REMARK 3 18 1.8802 - 1.8447 0.99 2704 143 0.2772 0.3118 REMARK 3 19 1.8447 - 1.8118 0.99 2709 142 0.2852 0.3118 REMARK 3 20 1.8118 - 1.7811 1.00 2755 145 0.2806 0.3173 REMARK 3 21 1.7811 - 1.7523 1.00 2718 143 0.3034 0.2841 REMARK 3 22 1.7523 - 1.7254 1.00 2737 144 0.3151 0.3458 REMARK 3 23 1.7254 - 1.7000 0.95 2582 136 0.3259 0.3471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5182 REMARK 3 ANGLE : 0.848 7016 REMARK 3 CHIRALITY : 0.053 781 REMARK 3 PLANARITY : 0.005 907 REMARK 3 DIHEDRAL : 20.413 3104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 24:213)) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1593 -14.1502 7.8092 REMARK 3 T TENSOR REMARK 3 T11: 0.1154 T22: 0.0908 REMARK 3 T33: 0.1051 T12: -0.0040 REMARK 3 T13: 0.0005 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.2388 L22: 0.2109 REMARK 3 L33: 0.4840 L12: -0.1498 REMARK 3 L13: 0.0163 L23: 0.3471 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.0065 S13: -0.0085 REMARK 3 S21: 0.0226 S22: 0.0085 S23: 0.0174 REMARK 3 S31: -0.0178 S32: 0.0252 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 214:331)) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0337 6.0342 22.7644 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1507 REMARK 3 T33: 0.1163 T12: -0.0111 REMARK 3 T13: -0.0006 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.4311 L22: 0.1565 REMARK 3 L33: 0.1194 L12: 0.1057 REMARK 3 L13: 0.3279 L23: 0.0138 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.0125 S13: 0.0784 REMARK 3 S21: 0.0360 S22: -0.0157 S23: 0.0464 REMARK 3 S31: -0.0009 S32: 0.0632 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 25:225)) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5392 -8.0334 -17.3912 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.1047 REMARK 3 T33: 0.1218 T12: -0.0026 REMARK 3 T13: 0.0100 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.2407 L22: 0.2467 REMARK 3 L33: 0.4190 L12: 0.0209 REMARK 3 L13: 0.1331 L23: -0.1054 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.0111 S13: 0.0190 REMARK 3 S21: -0.0117 S22: -0.0322 S23: 0.0028 REMARK 3 S31: -0.0386 S32: 0.0396 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 226:344)) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8581 1.6741 -26.7481 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1532 REMARK 3 T33: 0.1796 T12: 0.0177 REMARK 3 T13: 0.0014 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.0732 L22: 0.0640 REMARK 3 L33: 0.2621 L12: -0.1584 REMARK 3 L13: -0.0790 L23: 0.3075 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: 0.0502 S13: 0.0563 REMARK 3 S21: -0.0143 S22: -0.0702 S23: -0.0251 REMARK 3 S31: -0.0763 S32: -0.0942 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66193 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.832 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5N6X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.23 M AMMONIUM CITRATE DIBASIC AND REMARK 280 22% PEG3000, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.55000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 SER A 332 REMARK 465 TYR A 333 REMARK 465 ASP A 334 REMARK 465 PRO A 335 REMARK 465 GLU A 336 REMARK 465 LYS A 337 REMARK 465 VAL A 338 REMARK 465 GLU A 339 REMARK 465 HIS A 340 REMARK 465 VAL A 341 REMARK 465 THR A 342 REMARK 465 LEU A 343 REMARK 465 ASN A 344 REMARK 465 GLY B 23 REMARK 465 PRO B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 260 CD CE NZ REMARK 470 LYS B 172 CG CD CE NZ REMARK 470 LEU B 174 CG CD1 CD2 REMARK 470 ASN B 176 CG OD1 ND2 REMARK 470 ILE B 177 CG1 CG2 CD1 REMARK 470 GLN B 178 CG CD OE1 NE2 REMARK 470 HIS B 179 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 617 O HOH A 629 1.84 REMARK 500 OG SER B 319 O HOH B 401 2.05 REMARK 500 O HOH A 463 O HOH A 615 2.08 REMARK 500 OG SER B 82 O HOH B 402 2.09 REMARK 500 O HOH A 579 O HOH A 629 2.11 REMARK 500 O HOH A 574 O HOH A 579 2.11 REMARK 500 O HOH B 558 O HOH B 564 2.14 REMARK 500 O HOH A 619 O HOH B 423 2.15 REMARK 500 NH1 ARG B 289 OE1 GLU B 301 2.16 REMARK 500 ND1 HIS A 330 O TRP B 74 2.16 REMARK 500 O HOH B 613 O HOH B 614 2.17 REMARK 500 O HOH A 515 O HOH A 603 2.18 REMARK 500 O HIS A 179 O HOH A 401 2.18 REMARK 500 O HOH A 605 O HOH A 619 2.18 REMARK 500 O HOH B 409 O HOH B 587 2.19 REMARK 500 O HOH B 625 O HOH B 626 2.19 REMARK 500 O HOH B 598 O HOH B 625 2.19 REMARK 500 O HOH A 616 O HOH A 630 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 465 O HOH B 577 1655 2.13 REMARK 500 O HOH A 612 O HOH A 629 2545 2.14 REMARK 500 O HOH B 532 O HOH B 575 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 159 CB CYS B 159 SG -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 73 -64.83 -101.24 REMARK 500 ASN A 85 37.46 -97.32 REMARK 500 ALA A 171 74.17 -155.47 REMARK 500 VAL A 207 -60.95 -123.60 REMARK 500 TYR B 73 -61.61 -100.21 REMARK 500 ASP B 122 -157.74 -154.39 REMARK 500 GLN B 178 -154.38 -159.37 REMARK 500 HIS B 179 -10.95 76.70 REMARK 500 VAL B 207 -56.39 -123.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 626 DISTANCE = 6.74 ANGSTROMS DBREF 5NNY A 25 344 UNP Q5GA15 Q5GA15_LEGPN 25 344 DBREF 5NNY B 25 344 UNP Q5GA15 Q5GA15_LEGPN 25 344 SEQADV 5NNY GLY A 23 UNP Q5GA15 EXPRESSION TAG SEQADV 5NNY PRO A 24 UNP Q5GA15 EXPRESSION TAG SEQADV 5NNY GLY B 23 UNP Q5GA15 EXPRESSION TAG SEQADV 5NNY PRO B 24 UNP Q5GA15 EXPRESSION TAG SEQRES 1 A 322 GLY PRO MET THR ASP ILE SER MET GLY ASP LEU HIS ALA SEQRES 2 A 322 ASN ALA LEU LEU PHE LEU ASN ILE LEU VAL ARG GLN GLY SEQRES 3 A 322 ILE ILE ALA ILE SER PRO GLU ASN TYR ALA LYS PHE ALA SEQRES 4 A 322 GLU ILE TYR THR LEU PRO GLU LEU GLN ALA ASP TYR TRP SEQRES 5 A 322 GLY THR GLU ALA PRO VAL PHE SER ALA GLU ASN LYS GLN SEQRES 6 A 322 GLU ARG LEU GLU GLU ILE LYS LYS GLN TYR ASN ALA LEU SEQRES 7 A 322 ILE ALA GLN ILE LYS ILE ILE ASN THR LYS LYS LEU ILE SEQRES 8 A 322 ARG LEU ILE GLY ASP GLU LEU VAL ASP ARG GLY VAL ILE SEQRES 9 A 322 ASP TYR PHE ILE LEU LYS LEU LEU GLN ALA LEU TYR ASP SEQRES 10 A 322 GLN GLY ALA ASP PHE GLU ILE LEU LEU SER ASN HIS GLY SEQRES 11 A 322 ILE GLU PHE VAL GLU ALA CYS GLU LEU PHE LYS GLU ASN SEQRES 12 A 322 GLY ASN LYS LEU VAL ALA LYS ARG LEU GLY ASN ILE GLN SEQRES 13 A 322 HIS GLY ASN SER PHE HIS ALA LEU GLN GLU ALA ILE ALA SEQRES 14 A 322 ALA GLY ALA ILE SER ASN GLU GLU VAL LEU ASN ILE TYR SEQRES 15 A 322 HIS GLN VAL TYR LYS LYS HIS LEU LYS ILE ILE SER TYR SEQRES 16 A 322 SER LEU ASP PRO ASP ALA ASN GLU ILE LYS VAL PHE SER SEQRES 17 A 322 HIS ALA GLY ILE GLY LEU ASN HIS ILE ARG GLY LEU ALA SEQRES 18 A 322 ARG LYS PHE LYS VAL PRO TYR SER GLU GLU SER ALA VAL SEQRES 19 A 322 ASP LEU ALA LYS THR ILE ASP ALA ILE ASN LYS LYS PHE SEQRES 20 A 322 ALA GLU LYS ALA SER SER GLY GLU ILE HIS THR LEU TYR SEQRES 21 A 322 THR HIS ASP MET MET TYR ARG GLY TYR ALA GLY GLU HIS SEQRES 22 A 322 LEU ASN SER THR ASP GLU VAL VAL ALA ALA THR VAL TRP SEQRES 23 A 322 GLY ARG GLU TYR GLY ASP LEU ILE ARG THR SER LYS LYS SEQRES 24 A 322 PHE LYS ILE THR PHE ILE HIS GLY HIS ASP SER TYR ASP SEQRES 25 A 322 PRO GLU LYS VAL GLU HIS VAL THR LEU ASN SEQRES 1 B 322 GLY PRO MET THR ASP ILE SER MET GLY ASP LEU HIS ALA SEQRES 2 B 322 ASN ALA LEU LEU PHE LEU ASN ILE LEU VAL ARG GLN GLY SEQRES 3 B 322 ILE ILE ALA ILE SER PRO GLU ASN TYR ALA LYS PHE ALA SEQRES 4 B 322 GLU ILE TYR THR LEU PRO GLU LEU GLN ALA ASP TYR TRP SEQRES 5 B 322 GLY THR GLU ALA PRO VAL PHE SER ALA GLU ASN LYS GLN SEQRES 6 B 322 GLU ARG LEU GLU GLU ILE LYS LYS GLN TYR ASN ALA LEU SEQRES 7 B 322 ILE ALA GLN ILE LYS ILE ILE ASN THR LYS LYS LEU ILE SEQRES 8 B 322 ARG LEU ILE GLY ASP GLU LEU VAL ASP ARG GLY VAL ILE SEQRES 9 B 322 ASP TYR PHE ILE LEU LYS LEU LEU GLN ALA LEU TYR ASP SEQRES 10 B 322 GLN GLY ALA ASP PHE GLU ILE LEU LEU SER ASN HIS GLY SEQRES 11 B 322 ILE GLU PHE VAL GLU ALA CYS GLU LEU PHE LYS GLU ASN SEQRES 12 B 322 GLY ASN LYS LEU VAL ALA LYS ARG LEU GLY ASN ILE GLN SEQRES 13 B 322 HIS GLY ASN SER PHE HIS ALA LEU GLN GLU ALA ILE ALA SEQRES 14 B 322 ALA GLY ALA ILE SER ASN GLU GLU VAL LEU ASN ILE TYR SEQRES 15 B 322 HIS GLN VAL TYR LYS LYS HIS LEU LYS ILE ILE SER TYR SEQRES 16 B 322 SER LEU ASP PRO ASP ALA ASN GLU ILE LYS VAL PHE SER SEQRES 17 B 322 HIS ALA GLY ILE GLY LEU ASN HIS ILE ARG GLY LEU ALA SEQRES 18 B 322 ARG LYS PHE LYS VAL PRO TYR SER GLU GLU SER ALA VAL SEQRES 19 B 322 ASP LEU ALA LYS THR ILE ASP ALA ILE ASN LYS LYS PHE SEQRES 20 B 322 ALA GLU LYS ALA SER SER GLY GLU ILE HIS THR LEU TYR SEQRES 21 B 322 THR HIS ASP MET MET TYR ARG GLY TYR ALA GLY GLU HIS SEQRES 22 B 322 LEU ASN SER THR ASP GLU VAL VAL ALA ALA THR VAL TRP SEQRES 23 B 322 GLY ARG GLU TYR GLY ASP LEU ILE ARG THR SER LYS LYS SEQRES 24 B 322 PHE LYS ILE THR PHE ILE HIS GLY HIS ASP SER TYR ASP SEQRES 25 B 322 PRO GLU LYS VAL GLU HIS VAL THR LEU ASN FORMUL 3 HOH *484(H2 O) HELIX 1 AA1 ASN A 36 GLN A 47 1 12 HELIX 2 AA2 SER A 53 THR A 65 1 13 HELIX 3 AA3 LEU A 66 GLN A 70 5 5 HELIX 4 AA4 ALA A 78 ALA A 83 5 6 HELIX 5 AA5 ASN A 85 ALA A 102 1 18 HELIX 6 AA6 ILE A 126 GLN A 140 1 15 HELIX 7 AA7 SER A 149 LEU A 161 1 13 HELIX 8 AA8 ALA A 171 ASN A 176 1 6 HELIX 9 AA9 GLY A 180 ALA A 192 1 13 HELIX 10 AB1 SER A 196 VAL A 207 1 12 HELIX 11 AB2 TYR A 208 LYS A 210 5 3 HELIX 12 AB3 GLY A 235 LYS A 247 1 13 HELIX 13 AB4 SER A 254 SER A 275 1 22 HELIX 14 AB5 GLU A 277 TYR A 282 5 6 HELIX 15 AB6 THR A 283 GLY A 293 1 11 HELIX 16 AB7 SER A 298 ASP A 300 5 3 HELIX 17 AB8 GLU A 301 GLY A 309 1 9 HELIX 18 AB9 ASN B 36 GLN B 47 1 12 HELIX 19 AC1 SER B 53 THR B 65 1 13 HELIX 20 AC2 LEU B 66 GLN B 70 5 5 HELIX 21 AC3 ALA B 78 ALA B 83 5 6 HELIX 22 AC4 ASN B 85 ALA B 102 1 18 HELIX 23 AC5 ILE B 126 GLN B 140 1 15 HELIX 24 AC6 SER B 149 LEU B 161 1 13 HELIX 25 AC7 GLY B 180 ALA B 192 1 13 HELIX 26 AC8 SER B 196 VAL B 207 1 12 HELIX 27 AC9 TYR B 208 LYS B 210 5 3 HELIX 28 AD1 PRO B 221 ALA B 223 5 3 HELIX 29 AD2 GLY B 235 PHE B 246 1 12 HELIX 30 AD3 SER B 254 GLY B 276 1 23 HELIX 31 AD4 GLU B 277 TYR B 282 5 6 HELIX 32 AD5 THR B 283 GLY B 293 1 11 HELIX 33 AD6 SER B 298 ASP B 300 5 3 HELIX 34 AD7 GLU B 301 GLY B 309 1 9 HELIX 35 AD8 ASP B 334 VAL B 338 5 5 SHEET 1 AA1 4 ILE A 28 MET A 30 0 SHEET 2 AA1 4 LEU A 112 LEU A 115 1 O ARG A 114 N ILE A 28 SHEET 3 AA1 4 ASP A 143 LEU A 147 1 O GLU A 145 N LEU A 115 SHEET 4 AA1 4 LEU A 212 LYS A 213 1 O LYS A 213 N ILE A 146 SHEET 1 AA2 2 ILE A 50 ALA A 51 0 SHEET 2 AA2 2 LYS A 105 ILE A 106 -1 O LYS A 105 N ALA A 51 SHEET 1 AA3 3 SER A 216 ASP A 220 0 SHEET 2 AA3 3 GLU A 225 SER A 230 -1 O LYS A 227 N SER A 218 SHEET 3 AA3 3 LYS A 323 HIS A 328 1 O ILE A 327 N VAL A 228 SHEET 1 AA4 4 ASP B 27 MET B 30 0 SHEET 2 AA4 4 LEU B 112 LEU B 115 1 O ARG B 114 N ILE B 28 SHEET 3 AA4 4 ASP B 143 LEU B 147 1 O GLU B 145 N LEU B 115 SHEET 4 AA4 4 LEU B 212 LYS B 213 1 O LYS B 213 N ILE B 146 SHEET 1 AA5 2 ILE B 50 ALA B 51 0 SHEET 2 AA5 2 LYS B 105 ILE B 106 -1 O LYS B 105 N ALA B 51 SHEET 1 AA6 3 SER B 216 ASP B 220 0 SHEET 2 AA6 3 GLU B 225 SER B 230 -1 O LYS B 227 N SER B 218 SHEET 3 AA6 3 LYS B 323 HIS B 328 1 O ILE B 327 N VAL B 228 CRYST1 49.400 79.100 79.700 90.00 98.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020243 0.000000 0.003098 0.00000 SCALE2 0.000000 0.012642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012693 0.00000