HEADER HYDROLASE 10-APR-17 5NO5 TITLE ABYA5 WILDTYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABYA5; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VERRUCOSISPORA; SOURCE 3 ORGANISM_TAXID: 84593; SOURCE 4 GENE: ABYA5, VAB18032_16440; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: B834 KEYWDS DEACETYLASE, ELIMINATION, HYDROLASE, SPIROTETRONATE, ACETYL LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BYRNE,P.R.RACE REVDAT 4 17-JAN-24 5NO5 1 REMARK REVDAT 3 16-OCT-19 5NO5 1 REMARK REVDAT 2 12-JUN-19 5NO5 1 JRNL REVDAT 1 16-MAY-18 5NO5 0 JRNL AUTH N.R.LEES,L.C.HAN,M.J.BYRNE,J.A.DAVIES,A.E.PARNELL, JRNL AUTH 2 P.E.J.MORELAND,J.E.M.STACH,M.W.VAN DER KAMP,C.L.WILLIS, JRNL AUTH 3 P.R.RACE JRNL TITL AN ESTERASE-LIKE LYASE CATALYZES ACETATE ELIMINATION IN JRNL TITL 2 SPIROTETRONATE/SPIROTETRAMATE BIOSYNTHESIS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 58 2305 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 30664319 JRNL DOI 10.1002/ANIE.201812105 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 26076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5301 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.42000 REMARK 3 B22 (A**2) : 3.57000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.592 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.306 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.226 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5438 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5067 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7445 ; 1.714 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11607 ; 1.081 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 696 ; 6.224 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;30.423 ;22.116 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 780 ;15.430 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;19.304 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 856 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6184 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1192 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2790 ; 0.903 ; 1.590 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2789 ; 0.903 ; 1.589 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3484 ; 1.502 ; 2.382 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3485 ; 1.502 ; 2.383 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2648 ; 1.285 ; 1.750 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2646 ; 1.285 ; 1.750 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3961 ; 2.123 ; 2.561 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5927 ; 3.057 ;18.749 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5916 ; 3.049 ;18.756 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 65 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97887 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27564 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 41.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WILD TYPE ABYA5 DATA SETS WERE REMARK 280 COLLECTED FROM CRYSTALS FORMED IN FORMED IN 12.5 % W/V PEG 1000, REMARK 280 12.5% W/V PEG 3350, 12.5% V/V MPD, 0.02 M SODIUM L-GLUTAMATE, REMARK 280 0.02 M DL-ALANINE, 0.02 M GLYCINE, 0.02 M DL-LYSINE, HCL, 0.02 M REMARK 280 DL-SERINE, 0.1 M BICINE/TRIZMA BASE PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.61450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.64450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.64450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.61450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 GLU A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 PHE A 16 REMARK 465 GLN A 17 REMARK 465 GLY A 18 REMARK 465 PRO A 19 REMARK 465 MET A 20 REMARK 465 SER A 21 REMARK 465 GLY A 371 REMARK 465 GLY A 372 REMARK 465 ARG A 373 REMARK 465 ALA A 374 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 LEU B 12 REMARK 465 GLU B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 PHE B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 PRO B 19 REMARK 465 MET B 20 REMARK 465 SER B 21 REMARK 465 GLY B 371 REMARK 465 GLY B 372 REMARK 465 ARG B 373 REMARK 465 ALA B 374 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 ASP A 54 CG OD1 OD2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 287 CG CD OE1 NE2 REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 316 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 38 CG CD OE1 NE2 REMARK 470 GLN B 72 CG CD OE1 NE2 REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 316 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 320 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 357 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 368 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 84 NH1 ARG A 87 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 158 CB TRP A 158 CG -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 200 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 280 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 35 -49.59 -133.23 REMARK 500 SER A 217 -130.42 59.12 REMARK 500 VAL A 243 -70.41 -125.62 REMARK 500 ALA A 244 -61.13 -144.24 REMARK 500 THR A 270 -144.66 -118.83 REMARK 500 SER A 333 55.23 33.64 REMARK 500 VAL B 35 -46.33 -132.42 REMARK 500 SER B 217 -132.61 62.18 REMARK 500 VAL B 243 -69.52 -121.54 REMARK 500 ALA B 244 -58.91 -140.00 REMARK 500 THR B 270 -138.29 -113.88 REMARK 500 SER B 333 60.27 27.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YWF RELATED DB: PDB REMARK 900 ABYA5_QM DBREF 5NO5 A 20 374 UNP F4F7F5 F4F7F5_VERMA 1 355 DBREF 5NO5 B 20 374 UNP F4F7F5 F4F7F5_VERMA 1 355 SEQADV 5NO5 MET A 1 UNP F4F7F5 INITIATING METHIONINE SEQADV 5NO5 ALA A 2 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS A 3 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS A 4 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS A 5 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS A 6 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS A 7 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS A 8 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 SER A 9 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 SER A 10 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 GLY A 11 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 LEU A 12 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 GLU A 13 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 VAL A 14 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 LEU A 15 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 PHE A 16 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 GLN A 17 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 GLY A 18 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 PRO A 19 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 MET B 1 UNP F4F7F5 INITIATING METHIONINE SEQADV 5NO5 ALA B 2 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS B 3 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS B 4 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS B 5 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS B 6 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS B 7 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 HIS B 8 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 SER B 9 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 SER B 10 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 GLY B 11 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 LEU B 12 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 GLU B 13 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 VAL B 14 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 LEU B 15 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 PHE B 16 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 GLN B 17 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 GLY B 18 UNP F4F7F5 EXPRESSION TAG SEQADV 5NO5 PRO B 19 UNP F4F7F5 EXPRESSION TAG SEQRES 1 A 374 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 A 374 VAL LEU PHE GLN GLY PRO MET SER ASN ASP VAL ALA GLU SEQRES 3 A 374 LEU LYS GLN TYR VAL LEU ALA HIS VAL SER ALA GLN ASN SEQRES 4 A 374 ALA SER ALA ASP GLY VAL LEU ALA ARG ILE ASP ASP ASP SEQRES 5 A 374 GLY ASP GLY PRO ARG SER TRP THR THR GLN TRP ILE ARG SEQRES 6 A 374 ALA GLY GLU GLU ARG GLU GLN ALA GLY ASP LEU LEU ALA SEQRES 7 A 374 ALA THR THR PHE TYR ASN LEU ALA ARG PHE PRO PHE VAL SEQRES 8 A 374 ASP SER PRO GLY ARG ALA GLU ALA LEU ARG ARG CYS VAL SEQRES 9 A 374 ALA VAL PHE ASP ARG TRP ARG ARG THR VAL PRO GLY ILE SEQRES 10 A 374 GLU ARG LEU GLU LEU ARG LEU PRO GLY GLY VAL VAL ARG SEQRES 11 A 374 ALA TRP ALA ALA GLY LEU SER THR THR GLU ARG ARG PRO SEQRES 12 A 374 VAL LEU LEU MET THR GLY GLY ILE VAL SER ILE LYS GLU SEQRES 13 A 374 GLN TRP ALA PRO ILE LEU PRO GLU LEU ALA ARG TYR GLY SEQRES 14 A 374 PHE ALA ALA VAL VAL THR GLU LEU PRO GLY VAL GLY GLU SEQRES 15 A 374 ASN GLU LEU ARG TYR ASP LEU ASP SER ALA ALA LEU PHE SEQRES 16 A 374 GLY VAL LEU LEU ASP ALA VAL ALA GLU ARG ALA ASP THR SEQRES 17 A 374 SER ARG ALA TYR ALA LEU ALA LEU SER PHE SER GLY HIS SEQRES 18 A 374 LEU ALA LEU ARG ALA ALA PRO SER GLU PRO ARG LEU ARG SEQRES 19 A 374 GLY ILE VAL THR ALA GLY ALA PRO VAL ALA ALA PHE PHE SEQRES 20 A 374 THR ASP LYS GLU TRP GLN ALA ALA VAL PRO ARG VAL THR SEQRES 21 A 374 VAL ASP THR LEU ALA ARG LEU THR GLN THR THR PRO ALA SEQRES 22 A 374 THR VAL PHE ASP HIS VAL ARG ASN TRP ALA LEU THR PRO SEQRES 23 A 374 GLN ASP LEU ALA GLY VAL ARG ILE PRO VAL ALA TYR VAL SEQRES 24 A 374 ALA SER GLY ARG ASP GLU ILE ILE PRO PRO ALA ASP PRO SEQRES 25 A 374 ALA LEU LEU ARG THR HIS VAL ARG ASP PHE ARG THR ILE SEQRES 26 A 374 THR HIS ASP ASP VAL HIS GLY SER PRO ALA HIS PHE PRO SEQRES 27 A 374 HIS THR ARG LEU TRP THR LEU ALA GLN VAL LEU GLU MET SEQRES 28 A 374 SER GLY ALA ASP PRO ARG HIS ARG ALA ALA VAL ASP GLY SEQRES 29 A 374 ALA LEU ALA GLN VAL GLU GLY GLY ARG ALA SEQRES 1 B 374 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 B 374 VAL LEU PHE GLN GLY PRO MET SER ASN ASP VAL ALA GLU SEQRES 3 B 374 LEU LYS GLN TYR VAL LEU ALA HIS VAL SER ALA GLN ASN SEQRES 4 B 374 ALA SER ALA ASP GLY VAL LEU ALA ARG ILE ASP ASP ASP SEQRES 5 B 374 GLY ASP GLY PRO ARG SER TRP THR THR GLN TRP ILE ARG SEQRES 6 B 374 ALA GLY GLU GLU ARG GLU GLN ALA GLY ASP LEU LEU ALA SEQRES 7 B 374 ALA THR THR PHE TYR ASN LEU ALA ARG PHE PRO PHE VAL SEQRES 8 B 374 ASP SER PRO GLY ARG ALA GLU ALA LEU ARG ARG CYS VAL SEQRES 9 B 374 ALA VAL PHE ASP ARG TRP ARG ARG THR VAL PRO GLY ILE SEQRES 10 B 374 GLU ARG LEU GLU LEU ARG LEU PRO GLY GLY VAL VAL ARG SEQRES 11 B 374 ALA TRP ALA ALA GLY LEU SER THR THR GLU ARG ARG PRO SEQRES 12 B 374 VAL LEU LEU MET THR GLY GLY ILE VAL SER ILE LYS GLU SEQRES 13 B 374 GLN TRP ALA PRO ILE LEU PRO GLU LEU ALA ARG TYR GLY SEQRES 14 B 374 PHE ALA ALA VAL VAL THR GLU LEU PRO GLY VAL GLY GLU SEQRES 15 B 374 ASN GLU LEU ARG TYR ASP LEU ASP SER ALA ALA LEU PHE SEQRES 16 B 374 GLY VAL LEU LEU ASP ALA VAL ALA GLU ARG ALA ASP THR SEQRES 17 B 374 SER ARG ALA TYR ALA LEU ALA LEU SER PHE SER GLY HIS SEQRES 18 B 374 LEU ALA LEU ARG ALA ALA PRO SER GLU PRO ARG LEU ARG SEQRES 19 B 374 GLY ILE VAL THR ALA GLY ALA PRO VAL ALA ALA PHE PHE SEQRES 20 B 374 THR ASP LYS GLU TRP GLN ALA ALA VAL PRO ARG VAL THR SEQRES 21 B 374 VAL ASP THR LEU ALA ARG LEU THR GLN THR THR PRO ALA SEQRES 22 B 374 THR VAL PHE ASP HIS VAL ARG ASN TRP ALA LEU THR PRO SEQRES 23 B 374 GLN ASP LEU ALA GLY VAL ARG ILE PRO VAL ALA TYR VAL SEQRES 24 B 374 ALA SER GLY ARG ASP GLU ILE ILE PRO PRO ALA ASP PRO SEQRES 25 B 374 ALA LEU LEU ARG THR HIS VAL ARG ASP PHE ARG THR ILE SEQRES 26 B 374 THR HIS ASP ASP VAL HIS GLY SER PRO ALA HIS PHE PRO SEQRES 27 B 374 HIS THR ARG LEU TRP THR LEU ALA GLN VAL LEU GLU MET SEQRES 28 B 374 SER GLY ALA ASP PRO ARG HIS ARG ALA ALA VAL ASP GLY SEQRES 29 B 374 ALA LEU ALA GLN VAL GLU GLY GLY ARG ALA FORMUL 3 HOH *98(H2 O) HELIX 1 AA1 ASP A 23 VAL A 35 1 13 HELIX 2 AA2 ALA A 40 ALA A 47 1 8 HELIX 3 AA3 SER A 58 GLY A 74 1 17 HELIX 4 AA4 ASP A 75 PHE A 88 1 14 HELIX 5 AA5 SER A 93 THR A 113 1 21 HELIX 6 AA6 ILE A 154 PRO A 160 5 7 HELIX 7 AA7 ILE A 161 TYR A 168 1 8 HELIX 8 AA8 ASP A 188 ALA A 192 5 5 HELIX 9 AA9 ALA A 193 VAL A 202 1 10 HELIX 10 AB1 SER A 217 ALA A 227 1 11 HELIX 11 AB2 PRO A 228 GLU A 230 5 3 HELIX 12 AB3 ALA A 244 ASP A 249 1 6 HELIX 13 AB4 ASP A 249 VAL A 256 1 8 HELIX 14 AB5 PRO A 257 GLN A 269 1 13 HELIX 15 AB6 THR A 274 VAL A 279 1 6 HELIX 16 AB7 ARG A 280 ALA A 283 5 4 HELIX 17 AB8 THR A 285 GLY A 291 1 7 HELIX 18 AB9 PRO A 309 VAL A 319 1 11 HELIX 19 AC1 SER A 333 ALA A 335 5 3 HELIX 20 AC2 HIS A 336 GLY A 353 1 18 HELIX 21 AC3 ASP A 355 GLU A 370 1 16 HELIX 22 AC4 ASP B 23 VAL B 35 1 13 HELIX 23 AC5 ALA B 40 ALA B 47 1 8 HELIX 24 AC6 SER B 58 ALA B 73 1 16 HELIX 25 AC7 ASP B 75 PHE B 88 1 14 HELIX 26 AC8 SER B 93 THR B 113 1 21 HELIX 27 AC9 ILE B 154 PRO B 160 5 7 HELIX 28 AD1 ILE B 161 TYR B 168 1 8 HELIX 29 AD2 ASP B 188 ALA B 192 5 5 HELIX 30 AD3 ALA B 193 VAL B 202 1 10 HELIX 31 AD4 SER B 217 ALA B 227 1 11 HELIX 32 AD5 PRO B 228 GLU B 230 5 3 HELIX 33 AD6 ALA B 244 ASP B 249 1 6 HELIX 34 AD7 ASP B 249 VAL B 256 1 8 HELIX 35 AD8 PRO B 257 GLN B 269 1 13 HELIX 36 AD9 THR B 274 VAL B 279 1 6 HELIX 37 AE1 ARG B 280 ALA B 283 5 4 HELIX 38 AE2 THR B 285 GLY B 291 1 7 HELIX 39 AE3 PRO B 309 VAL B 319 1 11 HELIX 40 AE4 SER B 333 ALA B 335 5 3 HELIX 41 AE5 HIS B 336 SER B 352 1 17 HELIX 42 AE6 ASP B 355 GLU B 370 1 16 SHEET 1 AA1 8 GLU A 118 LEU A 124 0 SHEET 2 AA1 8 GLY A 127 ALA A 134 -1 O VAL A 129 N LEU A 122 SHEET 3 AA1 8 ALA A 171 THR A 175 -1 O VAL A 174 N TRP A 132 SHEET 4 AA1 8 PRO A 143 THR A 148 1 N LEU A 145 O VAL A 173 SHEET 5 AA1 8 ASP A 207 ALA A 215 1 O LEU A 214 N LEU A 146 SHEET 6 AA1 8 LEU A 233 ALA A 239 1 O ARG A 234 N ALA A 211 SHEET 7 AA1 8 VAL A 296 SER A 301 1 O ALA A 297 N ILE A 236 SHEET 8 AA1 8 PHE A 322 HIS A 327 1 O ILE A 325 N ALA A 300 SHEET 1 AA2 8 GLU B 118 LEU B 124 0 SHEET 2 AA2 8 GLY B 127 ALA B 134 -1 O ALA B 133 N GLU B 118 SHEET 3 AA2 8 ALA B 171 THR B 175 -1 O VAL B 174 N TRP B 132 SHEET 4 AA2 8 PRO B 143 THR B 148 1 N PRO B 143 O ALA B 171 SHEET 5 AA2 8 ASP B 207 ALA B 215 1 O LEU B 214 N LEU B 146 SHEET 6 AA2 8 LEU B 233 ALA B 239 1 O ARG B 234 N ALA B 211 SHEET 7 AA2 8 VAL B 296 SER B 301 1 O ALA B 297 N ILE B 236 SHEET 8 AA2 8 PHE B 322 HIS B 327 1 O ILE B 325 N ALA B 300 CISPEP 1 PHE A 88 PRO A 89 0 7.11 CISPEP 2 PHE B 88 PRO B 89 0 7.74 CRYST1 69.229 88.360 131.289 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007617 0.00000