HEADER TRANSFERASE 11-APR-17 5NOB
TITLE CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH OD336
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TANKYRASE-2;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: TANK2,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6,ARTD6,
COMPND 5 POLY [ADP-RIBOSE] POLYMERASE 5B,TNKS-2,TRF1-INTERACTING ANKYRIN-
COMPND 6 RELATED ADP-RIBOSE POLYMERASE 2,TANKYRASE II,TANKYRASE-LIKE PROTEIN,
COMPND 7 TANKYRASE-RELATED PROTEIN;
COMPND 8 EC: 2.4.2.30;
COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: TNKS2, PARP5B, TANK2, TNKL;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2
KEYWDS TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.IGNATEV,L.LEHTIO
REVDAT 3 17-JAN-24 5NOB 1 REMARK
REVDAT 2 10-JAN-18 5NOB 1 JRNL
REVDAT 1 29-NOV-17 5NOB 0
JRNL AUTH U.R.ANUMALA,J.WAALER,Y.NKIZINKIKO,A.IGNATEV,K.LAZAROW,
JRNL AUTH 2 P.LINDEMANN,P.A.OLSEN,S.MURTHY,E.OBAJI,A.G.MAJOUGA,S.LEONOV,
JRNL AUTH 3 J.P.VON KRIES,L.LEHTIO,S.KRAUSS,M.NAZARE
JRNL TITL DISCOVERY OF A NOVEL SERIES OF TANKYRASE INHIBITORS BY A
JRNL TITL 2 HYBRIDIZATION APPROACH.
JRNL REF J. MED. CHEM. V. 60 10013 2017
JRNL REFN ISSN 1520-4804
JRNL PMID 29155568
JRNL DOI 10.1021/ACS.JMEDCHEM.7B00883
REMARK 2
REMARK 2 RESOLUTION. 1.85 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0049
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.33
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 3 NUMBER OF REFLECTIONS : 37659
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.203
REMARK 3 R VALUE (WORKING SET) : 0.202
REMARK 3 FREE R VALUE : 0.237
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1982
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2692
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44
REMARK 3 BIN R VALUE (WORKING SET) : 0.3460
REMARK 3 BIN FREE R VALUE SET COUNT : 141
REMARK 3 BIN FREE R VALUE : 0.3520
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3270
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 70
REMARK 3 SOLVENT ATOMS : 179
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.76
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.87000
REMARK 3 B22 (A**2) : 1.20000
REMARK 3 B33 (A**2) : -2.07000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.147
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.394
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3446 ; 0.009 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4648 ; 1.285 ; 1.958
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 6.098 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;33.666 ;22.737
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;14.143 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;17.166 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.085 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2709 ; 0.006 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1618 ; 1.675 ; 2.603
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2014 ; 2.865 ; 3.877
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1828 ; 2.105 ; 2.843
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5302 ; 5.551 ;22.349
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN
REMARK 3 THE INPUT
REMARK 4
REMARK 4 5NOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-17.
REMARK 100 THE DEPOSITION ID IS D_1200004331.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 16-APR-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID14-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39641
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 200 DATA REDUNDANCY : 6.400
REMARK 200 R MERGE (I) : 0.18700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9400
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 7.92
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5
REMARK 200 DATA REDUNDANCY IN SHELL : 5.20
REMARK 200 R MERGE FOR SHELL (I) : 1.81500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.030
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: REFMAC
REMARK 200 STARTING MODEL: 5AEH
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.27
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TMAO, 0.1M TRIS, 20% PEG 2000
REMARK 280 MME, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.29000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.06000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.76000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.06000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.29000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.76000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 923
REMARK 465 HIS A 924
REMARK 465 HIS A 925
REMARK 465 HIS A 926
REMARK 465 HIS A 927
REMARK 465 HIS A 928
REMARK 465 HIS A 929
REMARK 465 SER A 930
REMARK 465 SER A 931
REMARK 465 GLY A 932
REMARK 465 VAL A 933
REMARK 465 ASP A 934
REMARK 465 LEU A 935
REMARK 465 GLY A 936
REMARK 465 THR A 937
REMARK 465 GLU A 938
REMARK 465 ASN A 939
REMARK 465 LEU A 940
REMARK 465 TYR A 941
REMARK 465 PHE A 942
REMARK 465 GLN A 943
REMARK 465 SER A 944
REMARK 465 MET A 945
REMARK 465 LEU A 946
REMARK 465 ASN A 947
REMARK 465 THR A 948
REMARK 465 SER A 949
REMARK 465 GLY A 950
REMARK 465 SER A 951
REMARK 465 ALA A 1112
REMARK 465 MET A 1113
REMARK 465 LYS A 1114
REMARK 465 SER A 1130
REMARK 465 VAL A 1131
REMARK 465 ASN A 1132
REMARK 465 GLY A 1133
REMARK 465 GLY A 1162
REMARK 465 MET B 923
REMARK 465 HIS B 924
REMARK 465 HIS B 925
REMARK 465 HIS B 926
REMARK 465 HIS B 927
REMARK 465 HIS B 928
REMARK 465 HIS B 929
REMARK 465 SER B 930
REMARK 465 SER B 931
REMARK 465 GLY B 932
REMARK 465 VAL B 933
REMARK 465 ASP B 934
REMARK 465 LEU B 935
REMARK 465 GLY B 936
REMARK 465 THR B 937
REMARK 465 GLU B 938
REMARK 465 ASN B 939
REMARK 465 LEU B 940
REMARK 465 TYR B 941
REMARK 465 PHE B 942
REMARK 465 GLN B 943
REMARK 465 SER B 944
REMARK 465 MET B 945
REMARK 465 LEU B 946
REMARK 465 ASN B 947
REMARK 465 THR B 948
REMARK 465 SER B 949
REMARK 465 GLY B 950
REMARK 465 SER B 951
REMARK 465 MET B 1113
REMARK 465 LYS B 1114
REMARK 465 SER B 1130
REMARK 465 VAL B 1131
REMARK 465 ASN B 1132
REMARK 465 GLY B 1133
REMARK 465 LEU B 1134
REMARK 465 ALA B 1135
REMARK 465 GLY B 1162
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A1034 0.48 -69.22
REMARK 500 SER B1111 -119.65 -73.45
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1302 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A1081 SG
REMARK 620 2 HIS A1084 ND1 107.9
REMARK 620 3 CYS A1089 SG 110.2 100.0
REMARK 620 4 CYS A1092 SG 114.4 106.9 116.1
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B1302 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B1081 SG
REMARK 620 2 HIS B1084 ND1 107.9
REMARK 620 3 CYS B1089 SG 108.0 103.6
REMARK 620 4 CYS B1092 SG 118.1 103.5 114.5
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 92T A 1301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 92T B 1301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1302
DBREF 5NOB A 946 1162 UNP Q9H2K2 TNKS2_HUMAN 946 1162
DBREF 5NOB B 946 1162 UNP Q9H2K2 TNKS2_HUMAN 946 1162
SEQADV 5NOB MET A 923 UNP Q9H2K2 INITIATING METHIONINE
SEQADV 5NOB HIS A 924 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB HIS A 925 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB HIS A 926 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB HIS A 927 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB HIS A 928 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB HIS A 929 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB SER A 930 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB SER A 931 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB GLY A 932 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB VAL A 933 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB ASP A 934 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB LEU A 935 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB GLY A 936 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB THR A 937 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB GLU A 938 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB ASN A 939 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB LEU A 940 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB TYR A 941 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB PHE A 942 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB GLN A 943 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB SER A 944 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB MET A 945 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB MET B 923 UNP Q9H2K2 INITIATING METHIONINE
SEQADV 5NOB HIS B 924 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB HIS B 925 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB HIS B 926 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB HIS B 927 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB HIS B 928 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB HIS B 929 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB SER B 930 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB SER B 931 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB GLY B 932 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB VAL B 933 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB ASP B 934 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB LEU B 935 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB GLY B 936 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB THR B 937 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB GLU B 938 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB ASN B 939 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB LEU B 940 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB TYR B 941 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB PHE B 942 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB GLN B 943 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB SER B 944 UNP Q9H2K2 EXPRESSION TAG
SEQADV 5NOB MET B 945 UNP Q9H2K2 EXPRESSION TAG
SEQRES 1 A 240 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU
SEQRES 2 A 240 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ASN THR
SEQRES 3 A 240 SER GLY SER GLY THR ILE LEU ILE ASP LEU SER PRO ASP
SEQRES 4 A 240 ASP LYS GLU PHE GLN SER VAL GLU GLU GLU MET GLN SER
SEQRES 5 A 240 THR VAL ARG GLU HIS ARG ASP GLY GLY HIS ALA GLY GLY
SEQRES 6 A 240 ILE PHE ASN ARG TYR ASN ILE LEU LYS ILE GLN LYS VAL
SEQRES 7 A 240 CYS ASN LYS LYS LEU TRP GLU ARG TYR THR HIS ARG ARG
SEQRES 8 A 240 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS ALA ASN GLU
SEQRES 9 A 240 ARG MET LEU PHE HIS GLY SER PRO PHE VAL ASN ALA ILE
SEQRES 10 A 240 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY
SEQRES 11 A 240 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER
SEQRES 12 A 240 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY
SEQRES 13 A 240 THR GLY CYS PRO VAL HIS LYS ASP ARG SER CYS TYR ILE
SEQRES 14 A 240 CYS HIS ARG GLN LEU LEU PHE CYS ARG VAL THR LEU GLY
SEQRES 15 A 240 LYS SER PHE LEU GLN PHE SER ALA MET LYS MET ALA HIS
SEQRES 16 A 240 SER PRO PRO GLY HIS HIS SER VAL THR GLY ARG PRO SER
SEQRES 17 A 240 VAL ASN GLY LEU ALA LEU ALA GLU TYR VAL ILE TYR ARG
SEQRES 18 A 240 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN
SEQRES 19 A 240 ILE MET ARG PRO GLU GLY
SEQRES 1 B 240 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU
SEQRES 2 B 240 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ASN THR
SEQRES 3 B 240 SER GLY SER GLY THR ILE LEU ILE ASP LEU SER PRO ASP
SEQRES 4 B 240 ASP LYS GLU PHE GLN SER VAL GLU GLU GLU MET GLN SER
SEQRES 5 B 240 THR VAL ARG GLU HIS ARG ASP GLY GLY HIS ALA GLY GLY
SEQRES 6 B 240 ILE PHE ASN ARG TYR ASN ILE LEU LYS ILE GLN LYS VAL
SEQRES 7 B 240 CYS ASN LYS LYS LEU TRP GLU ARG TYR THR HIS ARG ARG
SEQRES 8 B 240 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS ALA ASN GLU
SEQRES 9 B 240 ARG MET LEU PHE HIS GLY SER PRO PHE VAL ASN ALA ILE
SEQRES 10 B 240 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY
SEQRES 11 B 240 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER
SEQRES 12 B 240 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY
SEQRES 13 B 240 THR GLY CYS PRO VAL HIS LYS ASP ARG SER CYS TYR ILE
SEQRES 14 B 240 CYS HIS ARG GLN LEU LEU PHE CYS ARG VAL THR LEU GLY
SEQRES 15 B 240 LYS SER PHE LEU GLN PHE SER ALA MET LYS MET ALA HIS
SEQRES 16 B 240 SER PRO PRO GLY HIS HIS SER VAL THR GLY ARG PRO SER
SEQRES 17 B 240 VAL ASN GLY LEU ALA LEU ALA GLU TYR VAL ILE TYR ARG
SEQRES 18 B 240 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN
SEQRES 19 B 240 ILE MET ARG PRO GLU GLY
HET 92T A1301 34
HET ZN A1302 1
HET 92T B1301 34
HET ZN B1302 1
HETNAM 92T 1-[3-[4-(2-CHLOROPHENYL)-5-PYRIMIDIN-4-YL-1,2,4-
HETNAM 2 92T TRIAZOL-3-YL]CYCLOBUTYL]-2-OXIDANYLIDENE-3~{H}-
HETNAM 3 92T BENZIMIDAZOLE-5-CARBONITRILE
HETNAM ZN ZINC ION
FORMUL 3 92T 2(C24 H17 CL N8 O)
FORMUL 4 ZN 2(ZN 2+)
FORMUL 7 HOH *179(H2 O)
HELIX 1 AA1 ASP A 962 THR A 975 1 14
HELIX 2 AA2 ASN A 1002 GLU A 1019 1 18
HELIX 3 AA3 PHE A 1035 GLY A 1043 1 9
HELIX 4 AA4 ASP A 1045 ALA A 1049 5 5
HELIX 5 AA5 ASN A 1064 GLN A 1070 1 7
HELIX 6 AA6 GLY A 1074 GLY A 1078 5 5
HELIX 7 AA7 ARG A 1143 GLU A 1145 5 3
HELIX 8 AA8 ASP B 962 THR B 975 1 14
HELIX 9 AA9 ASN B 1002 ASN B 1020 1 19
HELIX 10 AB1 PHE B 1035 GLY B 1043 1 9
HELIX 11 AB2 ASP B 1045 ALA B 1049 5 5
HELIX 12 AB3 ASN B 1064 GLN B 1070 1 7
HELIX 13 AB4 GLY B 1074 GLY B 1078 5 5
HELIX 14 AB5 ARG B 1143 GLU B 1145 5 3
SHEET 1 AA1 5 ILE A 954 LEU A 958 0
SHEET 2 AA1 5 TYR A 992 CYS A1001 -1 O ILE A 997 N LEU A 958
SHEET 3 AA1 5 ALA A1147 ILE A1157 -1 O LEU A1152 N GLN A 998
SHEET 4 AA1 5 ARG A1094 THR A1102 -1 N ARG A1094 O TYR A1155
SHEET 5 AA1 5 GLU A1026 HIS A1031 -1 N LEU A1029 O CYS A1099
SHEET 1 AA2 4 ILE A1059 ALA A1062 0
SHEET 2 AA2 4 GLU A1138 ILE A1141 -1 O ILE A1141 N ILE A1059
SHEET 3 AA2 4 SER A1124 GLY A1127 -1 N GLY A1127 O GLU A1138
SHEET 4 AA2 4 SER A1106 GLN A1109 1 N PHE A1107 O SER A1124
SHEET 1 AA3 5 ILE B 954 ASP B 957 0
SHEET 2 AA3 5 TYR B 992 CYS B1001 -1 O CYS B1001 N ILE B 954
SHEET 3 AA3 5 ALA B1147 ILE B1157 -1 O GLN B1156 N ASN B 993
SHEET 4 AA3 5 ARG B1094 THR B1102 -1 N ARG B1094 O TYR B1155
SHEET 5 AA3 5 GLU B1026 HIS B1031 -1 N LEU B1029 O CYS B1099
SHEET 1 AA4 4 ILE B1059 ALA B1062 0
SHEET 2 AA4 4 GLU B1138 ILE B1141 -1 O TYR B1139 N PHE B1061
SHEET 3 AA4 4 SER B1124 ARG B1128 -1 N GLY B1127 O GLU B1138
SHEET 4 AA4 4 SER B1106 PHE B1110 1 N GLN B1109 O THR B1126
LINK SG CYS A1081 ZN ZN A1302 1555 1555 2.31
LINK ND1 HIS A1084 ZN ZN A1302 1555 1555 1.89
LINK SG CYS A1089 ZN ZN A1302 1555 1555 2.30
LINK SG CYS A1092 ZN ZN A1302 1555 1555 2.28
LINK SG CYS B1081 ZN ZN B1302 1555 1555 2.36
LINK ND1 HIS B1084 ZN ZN B1302 1555 1555 2.01
LINK SG CYS B1089 ZN ZN B1302 1555 1555 2.18
LINK SG CYS B1092 ZN ZN B1302 1555 1555 2.30
SITE 1 AC1 13 HIS A1031 SER A1033 PHE A1035 ILE A1039
SITE 2 AC1 13 PHE A1044 ASP A1045 HIS A1048 TYR A1050
SITE 3 AC1 13 TYR A1060 TYR A1071 ILE A1075 HOH A1433
SITE 4 AC1 13 HOH A1438
SITE 1 AC2 4 CYS A1081 HIS A1084 CYS A1089 CYS A1092
SITE 1 AC3 13 HIS B1031 SER B1033 PHE B1035 ILE B1039
SITE 2 AC3 13 PHE B1044 ASP B1045 HIS B1048 TYR B1050
SITE 3 AC3 13 TYR B1060 TYR B1071 HOH B1423 HOH B1438
SITE 4 AC3 13 HOH B1459
SITE 1 AC4 4 CYS B1081 HIS B1084 CYS B1089 CYS B1092
CRYST1 40.580 75.520 148.120 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.024643 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013242 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006751 0.00000