HEADER MOTOR PROTEIN 19-APR-17 5NPY TITLE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI FLAGELLAR HOOK PROTEIN FLGE2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR BASAL BODY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 563041; SOURCE 4 STRAIN: G27; SOURCE 5 GENE: FLGE-2, HPG27_859; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PETIT; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETIT-HP0908 KEYWDS HELICOBACTYER PYLORI, FLAGELLUM, HOOK, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.LOCONTE,G.ZANOTTI,I.KEKEZ,D.MATKOVIC-CALOGOVIC REVDAT 2 27-DEC-17 5NPY 1 JRNL REVDAT 1 15-NOV-17 5NPY 0 JRNL AUTH V.LOCONTE,I.KEKEZ,D.MATKOVIC-CALOGOVIC,G.ZANOTTI JRNL TITL STRUCTURAL CHARACTERIZATION OF FLGE2 PROTEIN FROM JRNL TITL 2 HELICOBACTER PYLORI HOOK. JRNL REF FEBS J. V. 284 4328 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 29083539 JRNL DOI 10.1111/FEBS.14312 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.250 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 23686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5623 - 5.6503 0.99 2779 151 0.1713 0.2088 REMARK 3 2 5.6503 - 4.4858 0.99 2769 145 0.1320 0.2054 REMARK 3 3 4.4858 - 3.9191 0.97 2707 145 0.1298 0.1988 REMARK 3 4 3.9191 - 3.5609 0.97 2719 144 0.1693 0.2504 REMARK 3 5 3.5609 - 3.3057 0.99 2755 141 0.1790 0.3121 REMARK 3 6 3.3057 - 3.1108 0.99 2795 145 0.1862 0.2413 REMARK 3 7 3.1108 - 2.9551 0.99 2826 145 0.2107 0.3208 REMARK 3 8 2.9551 - 2.8265 0.99 2777 148 0.2340 0.2999 REMARK 3 9 2.8265 - 2.7177 0.98 2712 138 0.2474 0.3282 REMARK 3 10 2.7177 - 2.6239 0.98 2756 136 0.2518 0.3168 REMARK 3 11 2.6239 - 2.5418 0.99 2778 146 0.2556 0.3673 REMARK 3 12 2.5418 - 2.4692 0.99 2794 146 0.2515 0.3285 REMARK 3 13 2.4692 - 2.4042 0.99 2765 149 0.2586 0.3755 REMARK 3 14 2.4042 - 2.3455 0.99 2786 148 0.2407 0.3330 REMARK 3 15 2.3455 - 2.2922 0.74 2091 106 0.2404 0.2887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3792 REMARK 3 ANGLE : 0.995 5112 REMARK 3 CHIRALITY : 0.058 553 REMARK 3 PLANARITY : 0.007 669 REMARK 3 DIHEDRAL : 15.279 2311 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 36.8348 -0.1189 227.6481 REMARK 3 T TENSOR REMARK 3 T11: 0.1647 T22: 0.1652 REMARK 3 T33: 0.1703 T12: 0.0030 REMARK 3 T13: 0.0220 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.1009 L22: 0.1709 REMARK 3 L33: 0.5528 L12: -0.0833 REMARK 3 L13: 0.0204 L23: -0.1689 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.0088 S13: -0.0151 REMARK 3 S21: 0.0219 S22: 0.0423 S23: -0.0266 REMARK 3 S31: -0.0914 S32: -0.0125 S33: 0.0122 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-16; 21-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID23-2; ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8729; 0.98127 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M; DECTRIS REMARK 200 PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 48.551 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.67100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM THIOCYANATE, 0.1 M BIS REMARK 280 -TRIS PROPANE PH 8.5, 20% W/V PEG3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.60450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.13050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.79600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 119.13050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.60450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.79600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 ASN A 7 REMARK 465 ALA A 8 REMARK 465 TYR A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 ILE A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 HIS A 15 REMARK 465 GLN A 16 REMARK 465 PHE A 17 REMARK 465 GLY A 18 REMARK 465 ILE A 19 REMARK 465 ASP A 20 REMARK 465 SER A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 ASN A 24 REMARK 465 ASN A 25 REMARK 465 ILE A 26 REMARK 465 ALA A 27 REMARK 465 ASN A 28 REMARK 465 VAL A 29 REMARK 465 ASN A 30 REMARK 465 THR A 31 REMARK 465 LEU A 32 REMARK 465 GLY A 33 REMARK 465 TYR A 34 REMARK 465 ARG A 35 REMARK 465 SER A 36 REMARK 465 ASN A 37 REMARK 465 ASP A 38 REMARK 465 PRO A 39 REMARK 465 GLU A 40 REMARK 465 PHE A 41 REMARK 465 LYS A 42 REMARK 465 THR A 43 REMARK 465 LEU A 44 REMARK 465 PHE A 45 REMARK 465 SER A 46 REMARK 465 SER A 47 REMARK 465 HIS A 48 REMARK 465 LEU A 49 REMARK 465 ASP A 50 REMARK 465 ALA A 51 REMARK 465 LEU A 52 REMARK 465 ASN A 53 REMARK 465 ALA A 54 REMARK 465 LYS A 55 REMARK 465 SER A 56 REMARK 465 VAL A 57 REMARK 465 VAL A 58 REMARK 465 THR A 59 REMARK 465 ASN A 60 REMARK 465 ASP A 61 REMARK 465 ARG A 62 REMARK 465 ASN A 63 REMARK 465 TYR A 64 REMARK 465 GLY A 65 REMARK 465 VAL A 66 REMARK 465 THR A 67 REMARK 465 GLY A 68 REMARK 465 SER A 69 REMARK 465 GLY A 70 REMARK 465 ASN A 71 REMARK 465 VAL A 72 REMARK 465 LEU A 73 REMARK 465 SER A 74 REMARK 465 ASN A 75 REMARK 465 LYS A 76 REMARK 465 ASP A 77 REMARK 465 GLY A 78 REMARK 465 GLU A 79 REMARK 465 TYR A 80 REMARK 465 LYS A 254 REMARK 465 GLU A 255 REMARK 465 ASN A 256 REMARK 465 GLY A 257 REMARK 465 LYS A 258 REMARK 465 THR A 530 REMARK 465 ILE A 531 REMARK 465 ASN A 532 REMARK 465 GLY A 533 REMARK 465 GLU A 534 REMARK 465 ASN A 535 REMARK 465 ARG A 536 REMARK 465 SER A 565 REMARK 465 ASN A 566 REMARK 465 VAL A 567 REMARK 465 ASN A 568 REMARK 465 ALA A 569 REMARK 465 GLY A 570 REMARK 465 ASN A 571 REMARK 465 ALA A 572 REMARK 465 LEU A 573 REMARK 465 THR A 574 REMARK 465 ASN A 575 REMARK 465 LEU A 576 REMARK 465 ILE A 577 REMARK 465 LEU A 578 REMARK 465 MET A 579 REMARK 465 GLN A 580 REMARK 465 ARG A 581 REMARK 465 GLY A 582 REMARK 465 TYR A 583 REMARK 465 SER A 584 REMARK 465 MET A 585 REMARK 465 ASN A 586 REMARK 465 ALA A 587 REMARK 465 ARG A 588 REMARK 465 ALA A 589 REMARK 465 PHE A 590 REMARK 465 GLY A 591 REMARK 465 ALA A 592 REMARK 465 GLY A 593 REMARK 465 ASP A 594 REMARK 465 ASP A 595 REMARK 465 MET A 596 REMARK 465 ILE A 597 REMARK 465 LYS A 598 REMARK 465 GLU A 599 REMARK 465 ALA A 600 REMARK 465 ILE A 601 REMARK 465 SER A 602 REMARK 465 LEU A 603 REMARK 465 LYS A 604 REMARK 465 LYS A 605 REMARK 465 GLU A 606 REMARK 465 ASN A 607 REMARK 465 LEU A 608 REMARK 465 TYR A 609 REMARK 465 PHE A 610 REMARK 465 GLN A 611 REMARK 465 SER A 612 REMARK 465 HIS A 613 REMARK 465 HIS A 614 REMARK 465 HIS A 615 REMARK 465 HIS A 616 REMARK 465 HIS A 617 REMARK 465 HIS A 618 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 112 N GLY A 113 1.74 REMARK 500 OG SER A 323 O ASN A 337 1.78 REMARK 500 O GLY A 113 O HOH A 801 1.93 REMARK 500 O HOH A 802 O HOH A 896 2.08 REMARK 500 O4 144 A 701 O HOH A 802 2.10 REMARK 500 O TYR A 185 O HOH A 803 2.14 REMARK 500 O HOH A 901 O HOH A 1020 2.18 REMARK 500 NZ LYS A 271 O HOH A 804 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 112 C GLY A 113 N -0.308 REMARK 500 GLU A 270 C LYS A 271 N -0.239 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 112 CA - C - N ANGL. DEV. = 14.2 DEGREES REMARK 500 ASP A 112 O - C - N ANGL. DEV. = -21.7 DEGREES REMARK 500 GLU A 270 CA - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 GLU A 270 O - C - N ANGL. DEV. = -12.2 DEGREES REMARK 500 LYS A 271 C - N - CA ANGL. DEV. = 24.1 DEGREES REMARK 500 LEU A 523 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 104 13.87 100.99 REMARK 500 LYS A 117 -64.35 -97.34 REMARK 500 GLN A 118 -165.98 -129.25 REMARK 500 ASP A 154 46.48 70.30 REMARK 500 ALA A 231 46.93 -90.58 REMARK 500 GLU A 260 123.93 -174.45 REMARK 500 LYS A 277 -48.71 -133.48 REMARK 500 THR A 290 -169.40 -106.81 REMARK 500 ASN A 337 -82.51 -124.84 REMARK 500 ALA A 426 -84.31 -97.92 REMARK 500 HIS A 428 33.14 -96.82 REMARK 500 SER A 451 -167.16 -117.04 REMARK 500 ASP A 458 50.57 -115.01 REMARK 500 GLN A 471 144.01 -174.98 REMARK 500 ARG A 480 -70.41 -113.12 REMARK 500 GLU A 528 -163.60 -111.80 REMARK 500 LEU A 538 -56.39 75.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 112 -23.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1106 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1107 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1108 DISTANCE = 6.48 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 144 A 701 DBREF 5NPY A 1 605 UNP B5Z7R4 B5Z7R4_HELPG 1 605 SEQADV 5NPY GLU A 606 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY ASN A 607 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY LEU A 608 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY TYR A 609 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY PHE A 610 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY GLN A 611 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY SER A 612 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY HIS A 613 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY HIS A 614 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY HIS A 615 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY HIS A 616 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY HIS A 617 UNP B5Z7R4 EXPRESSION TAG SEQADV 5NPY HIS A 618 UNP B5Z7R4 EXPRESSION TAG SEQRES 1 A 618 MET ASN ASP THR LEU LEU ASN ALA TYR SER GLY ILE LYS SEQRES 2 A 618 THR HIS GLN PHE GLY ILE ASP SER LEU SER ASN ASN ILE SEQRES 3 A 618 ALA ASN VAL ASN THR LEU GLY TYR ARG SER ASN ASP PRO SEQRES 4 A 618 GLU PHE LYS THR LEU PHE SER SER HIS LEU ASP ALA LEU SEQRES 5 A 618 ASN ALA LYS SER VAL VAL THR ASN ASP ARG ASN TYR GLY SEQRES 6 A 618 VAL THR GLY SER GLY ASN VAL LEU SER ASN LYS ASP GLY SEQRES 7 A 618 GLU TYR MET PRO SER GLU GLY GLU PHE HIS MET ALA TYR SEQRES 8 A 618 GLN GLY LYS GLY TRP PHE VAL ILE GLY PRO ASN LYS ASN SEQRES 9 A 618 GLY GLU MET THR ILE ASN LYS ASP GLY PHE SER LYS LYS SEQRES 10 A 618 GLN ASP ASN PHE LEU THR ARG ALA GLY ASN PHE ALA ARG SEQRES 11 A 618 ASP ALA ASP GLY TYR LEU VAL THR PRO GLU GLY TYR TYR SEQRES 12 A 618 VAL TYR GLY ILE ASP LEU LYS LYS ILE LYS ASP GLY THR SEQRES 13 A 618 LEU ASN SER THR ALA ARG ASP GLU ASP ILE GLU LYS LEU SEQRES 14 A 618 HIS GLY ASN THR LEU SER PRO LEU GLN ILE PRO GLN ASP SEQRES 15 A 618 LEU THR TYR GLN PRO VAL LEU SER THR LYS VAL GLY ILE SEQRES 16 A 618 SER VAL ASN LEU ASN PRO LYS ASP HIS LEU LYS GLY VAL SEQRES 17 A 618 GLN ASP PHE PHE LEU ASN ASP LYS GLY GLU ILE ILE LYS SEQRES 18 A 618 GLU ARG PHE LEU ASN GLN ASP ILE ASN ALA LEU ALA ASN SEQRES 19 A 618 ASP ASP ASN GLU PRO ILE ASP ALA ILE THR ASN ARG LYS SEQRES 20 A 618 LEU ASN VAL SER ILE GLN LYS GLU ASN GLY LYS LYS GLU SEQRES 21 A 618 ASP PHE VAL PHE THR TYR GLY ASP ALA GLU LYS GLY GLU SEQRES 22 A 618 ASN GLN PHE LYS THR LEU GLY ASP LEU GLN LYS LEU LEU SEQRES 23 A 618 LYS GLU LYS THR GLY LEU ASP LEU ASN LEU ILE LYS SER SEQRES 24 A 618 GLU LYS ASP ALA LYS SER PRO PRO LEU LEU LEU GLU ILE SEQRES 25 A 618 ALA ASN PRO SER GLN THR PRO ILE THR PHE SER LEU SER SEQRES 26 A 618 GLY GLY ILE ALA ASP LYS LEU GLY LEU ASN ALA ASN GLY SEQRES 27 A 618 MET GLU LEU LYS LYS GLY ILE SER ARG ASP SER VAL ALA SEQRES 28 A 618 ILE LYS ILE PRO TYR TYR SER THR GLU VAL ASP ILE TYR SEQRES 29 A 618 ASP LYS ALA GLY ASP LYS TYR LEU LEU GLN SER GLU TYR SEQRES 30 A 618 TYR MET THR ASN SER ASN ASP PRO THR SER SER PRO THR SEQRES 31 A 618 SER LYS ARG LYS ASN GLN THR TRP GLU VAL LYS SER TYR SEQRES 32 A 618 ILE VAL ASP PRO LYS ASN LYS THR PRO ILE ASN ASP PRO SEQRES 33 A 618 THR TRP GLU ILE VAL GLY PHE ASP SER ALA THR HIS LYS SEQRES 34 A 618 MET LYS SER ALA PRO MET THR LEU ASP PHE LYS GLY ASN SEQRES 35 A 618 LYS LEU THR TYR SER LEU ASP LYS SER GLU ASN HIS ASP SEQRES 36 A 618 SER SER ASP LEU SER TYR GLN ASP SER LYS LEU LEU GLU SEQRES 37 A 618 ALA SER GLN ASP GLY LYS PRO ARG GLY ILE PHE ARG ASP SEQRES 38 A 618 MET ARG ILE GLU GLU ASN GLY VAL ILE SER LEU ALA PHE SEQRES 39 A 618 SER ASN GLY VAL VAL GLU PRO VAL ALA ARG ILE GLY ILE SEQRES 40 A 618 LEU ALA PHE THR ASN ASP GLN GLY LEU ARG LYS ILE GLY SEQRES 41 A 618 GLY ASN LEU TYR GLU MET GLN GLU GLY THR ILE ASN GLY SEQRES 42 A 618 GLU ASN ARG PRO LEU SER GLY ASN PRO ILE LEU GLY TRP SEQRES 43 A 618 ASP GLU GLU GLY LYS LEU LYS PHE GLY LYS ILE ARG HIS SEQRES 44 A 618 LYS TYR LEU GLU THR SER ASN VAL ASN ALA GLY ASN ALA SEQRES 45 A 618 LEU THR ASN LEU ILE LEU MET GLN ARG GLY TYR SER MET SEQRES 46 A 618 ASN ALA ARG ALA PHE GLY ALA GLY ASP ASP MET ILE LYS SEQRES 47 A 618 GLU ALA ILE SER LEU LYS LYS GLU ASN LEU TYR PHE GLN SEQRES 48 A 618 SER HIS HIS HIS HIS HIS HIS HET 144 A 701 8 HETNAM 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM FORMUL 2 144 C4 H12 N O3 1+ FORMUL 3 HOH *308(H2 O) HELIX 1 AA1 ALA A 161 LEU A 169 1 9 HELIX 2 AA2 VAL A 208 LEU A 213 1 6 HELIX 3 AA3 ILE A 220 GLN A 227 1 8 HELIX 4 AA4 THR A 278 THR A 290 1 13 HELIX 5 AA5 GLY A 326 GLY A 333 1 8 HELIX 6 AA6 ASN A 512 LEU A 516 5 5 SHEET 1 AA1 4 LEU A 136 VAL A 137 0 SHEET 2 AA1 4 ASN A 127 ARG A 130 -1 N ALA A 129 O VAL A 137 SHEET 3 AA1 4 PHE A 87 GLY A 93 -1 N PHE A 87 O PHE A 128 SHEET 4 AA1 4 GLY A 555 HIS A 559 -1 O ARG A 558 N ALA A 90 SHEET 1 AA2 6 PHE A 114 LYS A 116 0 SHEET 2 AA2 6 MET A 107 ILE A 109 -1 N THR A 108 O SER A 115 SHEET 3 AA2 6 THR A 173 PRO A 176 -1 O LEU A 174 N MET A 107 SHEET 4 AA2 6 TYR A 143 ASP A 148 -1 N GLY A 146 O SER A 175 SHEET 5 AA2 6 PHE A 97 GLY A 100 -1 N VAL A 98 O TYR A 145 SHEET 6 AA2 6 PHE A 121 THR A 123 -1 O PHE A 121 N ILE A 99 SHEET 1 AA310 PHE A 114 LYS A 116 0 SHEET 2 AA310 MET A 107 ILE A 109 -1 N THR A 108 O SER A 115 SHEET 3 AA310 THR A 173 PRO A 176 -1 O LEU A 174 N MET A 107 SHEET 4 AA310 TYR A 143 ASP A 148 -1 N GLY A 146 O SER A 175 SHEET 5 AA310 VAL A 499 ILE A 505 -1 O ARG A 504 N ILE A 147 SHEET 6 AA310 VAL A 489 PHE A 494 -1 N ILE A 490 O VAL A 502 SHEET 7 AA310 GLY A 477 ILE A 484 -1 N ARG A 480 O ALA A 493 SHEET 8 AA310 THR A 184 TYR A 185 -1 N TYR A 185 O GLY A 477 SHEET 9 AA310 THR A 156 LEU A 157 1 N LEU A 157 O THR A 184 SHEET 10 AA310 ILE A 152 LYS A 153 -1 N LYS A 153 O THR A 156 SHEET 1 AA4 4 MET A 435 PHE A 439 0 SHEET 2 AA4 4 ASN A 442 SER A 447 -1 O ASN A 442 N PHE A 439 SHEET 3 AA4 4 LYS A 192 ASN A 198 1 N VAL A 193 O SER A 447 SHEET 4 AA4 4 LYS A 465 GLN A 471 -1 O LYS A 465 N ASN A 198 SHEET 1 AA5 5 HIS A 204 GLY A 207 0 SHEET 2 AA5 5 LYS A 353 TYR A 364 -1 O ILE A 354 N LYS A 206 SHEET 3 AA5 5 LYS A 370 ASN A 381 -1 O TYR A 377 N TYR A 357 SHEET 4 AA5 5 GLN A 396 ASP A 406 -1 O GLU A 399 N TYR A 378 SHEET 5 AA5 5 THR A 411 PRO A 412 -1 O THR A 411 N ASP A 406 SHEET 1 AA6 6 HIS A 204 GLY A 207 0 SHEET 2 AA6 6 LYS A 353 TYR A 364 -1 O ILE A 354 N LYS A 206 SHEET 3 AA6 6 LYS A 370 ASN A 381 -1 O TYR A 377 N TYR A 357 SHEET 4 AA6 6 GLN A 396 ASP A 406 -1 O GLU A 399 N TYR A 378 SHEET 5 AA6 6 THR A 417 PHE A 423 -1 O GLU A 419 N VAL A 400 SHEET 6 AA6 6 MET A 430 LYS A 431 -1 O LYS A 431 N GLY A 422 SHEET 1 AA7 5 GLN A 275 PHE A 276 0 SHEET 2 AA7 5 GLU A 260 TYR A 266 1 N THR A 265 O PHE A 276 SHEET 3 AA7 5 LYS A 247 ILE A 252 -1 N LEU A 248 O PHE A 264 SHEET 4 AA7 5 ILE A 320 SER A 325 -1 O SER A 323 N SER A 251 SHEET 5 AA7 5 ALA A 336 LEU A 341 -1 O LEU A 341 N ILE A 320 SHEET 1 AA8 3 ASP A 293 LYS A 298 0 SHEET 2 AA8 3 LEU A 308 ALA A 313 -1 O ALA A 313 N ASP A 293 SHEET 3 AA8 3 SER A 346 ALA A 351 -1 O ARG A 347 N ILE A 312 SHEET 1 AA9 2 LEU A 508 ALA A 509 0 SHEET 2 AA9 2 ILE A 543 LEU A 544 -1 O ILE A 543 N ALA A 509 SHEET 1 AB1 2 ARG A 517 ILE A 519 0 SHEET 2 AB1 2 LEU A 523 GLU A 525 -1 O GLU A 525 N ARG A 517 SITE 1 AC1 8 ASN A 226 THR A 380 ARG A 393 THR A 397 SITE 2 AC1 8 GLU A 399 TYR A 461 HOH A 802 HOH A 821 CRYST1 43.209 49.592 238.261 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023143 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004197 0.00000