HEADER COPPER-BINDING PROTEIN 20-APR-17 5NQM TITLE CU(I)-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSP3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOSINUS TRICHOSPORIUM OB3B; SOURCE 3 ORGANISM_TAXID: 595536; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COPPER-BINDING PROTEIN, METHANE OXIDATION, COPPER STORAGE, KEYWDS 2 METHANOTROPHS, PARTICULATE METHANE MONOOXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BASLE,S.PLATSAKI,C.DENNISON REVDAT 5 17-JAN-24 5NQM 1 LINK REVDAT 4 30-AUG-17 5NQM 1 REMARK REVDAT 3 19-JUL-17 5NQM 1 REVDAT 2 28-JUN-17 5NQM 1 JRNL REVDAT 1 31-MAY-17 5NQM 0 JRNL AUTH A.BASLE,S.PLATSAKI,C.DENNISON JRNL TITL VISUALIZING BIOLOGICAL COPPER STORAGE: THE IMPORTANCE OF JRNL TITL 2 THIOLATE-COORDINATED TETRANUCLEAR CLUSTERS. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 8697 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28504850 JRNL DOI 10.1002/ANIE.201703107 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 724 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1025 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 935 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.696 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 945 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 881 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1268 ; 1.712 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2033 ; 1.030 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 126 ; 4.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;28.265 ;23.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 173 ;14.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.216 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 147 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1085 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 205 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 504 ; 2.164 ; 1.697 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 503 ; 2.158 ; 1.689 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 627 ; 2.520 ; 2.535 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 628 ; 2.519 ; 2.537 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 441 ; 3.461 ; 2.300 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 442 ; 3.457 ; 2.302 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 641 ; 3.703 ; 3.227 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1100 ; 3.524 ;14.281 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1089 ; 3.527 ;14.223 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1826 ; 3.297 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 11 ;16.344 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1851 ; 7.981 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200003568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3746 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 45.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ARM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGCL2, 100 MM HEPES PH 7.5, 30% REMARK 280 PEG 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.32500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.34000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.32500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.34000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.32500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.34000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.32500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.34000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -279.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 44.65000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 44.65000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 45.62000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 45.62000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 GLN A 16 REMARK 465 THR A 17 REMARK 465 LEU A 131 REMARK 465 THR A 132 REMARK 465 HIS A 133 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 47 37.26 -96.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 213 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 58 OD1 REMARK 620 2 CYS A 101 SG 113.7 REMARK 620 3 CYS A 114 SG 98.8 146.1 REMARK 620 4 CU1 A 214 CU 83.9 52.1 146.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 215 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 74 O REMARK 620 2 GLU A 79 OE2 168.0 REMARK 620 3 HOH A 305 O 92.8 81.6 REMARK 620 4 HOH A 320 O 82.4 86.9 89.8 REMARK 620 5 HOH A 322 O 85.3 99.9 177.3 88.1 REMARK 620 6 HOH A 329 O 92.9 97.6 89.9 175.3 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 211 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 118 SG 154.0 REMARK 620 3 CU1 A 212 CU 145.7 57.8 REMARK 620 4 CU1 A 214 CU 48.8 133.2 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 214 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 O REMARK 620 2 CYS A 97 SG 107.9 REMARK 620 3 CYS A 101 SG 97.4 154.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 212 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 114 O REMARK 620 2 CYS A 114 SG 104.7 REMARK 620 3 CYS A 118 SG 97.5 157.4 REMARK 620 4 CU1 A 213 CU 116.1 48.8 116.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 215 DBREF1 5NQM A 1 133 UNP A0A1I9GEP2_METTR DBREF2 5NQM A A0A1I9GEP2 1 133 SEQRES 1 A 133 MET HIS VAL GLU ALA MET ILE SER LYS HIS PRO GLN ALA SEQRES 2 A 133 ARG GLY GLN THR ASP ARG SER LEU VAL GLN CYS VAL GLU SEQRES 3 A 133 MET CYS PHE ASP CYS ALA GLN THR CYS ALA ALA CYS ALA SEQRES 4 A 133 ASP ALA CYS LEU GLY GLU ASP LYS VAL ALA ASP LEU ARG SEQRES 5 A 133 HIS CYS ILE ARG LEU ASN LEU ASP CYS ALA GLU ILE CYS SEQRES 6 A 133 VAL ALA ALA GLY SER ILE ALA SER ARG ALA ALA GLY THR SEQRES 7 A 133 GLU GLU SER ILE LEU ARG THR MET LEU GLN THR CYS ALA SEQRES 8 A 133 GLU MET CYS ARG MET CYS GLU GLU GLU CYS ARG ARG HIS SEQRES 9 A 133 ALA GLY ASN HIS GLU HIS CYS ARG ILE CYS ALA ASP VAL SEQRES 10 A 133 CYS LYS GLU CYS GLU THR ALA CYS ARG SER ALA THR GLY SEQRES 11 A 133 LEU THR HIS HET CU1 A 211 1 HET CU1 A 212 1 HET CU1 A 213 1 HET CU1 A 214 1 HET NA A 215 1 HETNAM CU1 COPPER (I) ION HETNAM NA SODIUM ION FORMUL 2 CU1 4(CU 1+) FORMUL 6 NA NA 1+ FORMUL 7 HOH *38(H2 O) HELIX 1 AA1 HIS A 2 HIS A 10 1 9 HELIX 2 AA2 ARG A 19 GLY A 44 1 26 HELIX 3 AA3 LYS A 47 ASP A 50 5 4 HELIX 4 AA4 LEU A 51 ARG A 74 1 24 HELIX 5 AA5 ILE A 82 ALA A 105 1 24 HELIX 6 AA6 HIS A 108 THR A 129 1 22 LINK OD1 ASN A 58 CU CU1 A 213 1555 1555 2.35 LINK O ARG A 74 NA NA A 215 1555 1555 2.07 LINK OE2 GLU A 79 NA NA A 215 1555 1555 2.04 LINK SG CYS A 97 CU CU1 A 211 1555 1555 2.03 LINK O CYS A 97 CU CU1 A 214 1555 1555 2.44 LINK SG CYS A 97 CU CU1 A 214 1555 1555 2.02 LINK SG CYS A 101 CU CU1 A 213 1555 1555 2.23 LINK SG CYS A 101 CU CU1 A 214 1555 1555 2.19 LINK O CYS A 114 CU CU1 A 212 1555 1555 2.46 LINK SG CYS A 114 CU CU1 A 212 1555 1555 1.96 LINK SG CYS A 114 CU CU1 A 213 1555 1555 2.04 LINK SG CYS A 118 CU CU1 A 211 1555 1555 2.02 LINK SG CYS A 118 CU CU1 A 212 1555 1555 2.30 LINK CU CU1 A 211 CU CU1 A 212 1555 1555 2.62 LINK CU CU1 A 211 CU CU1 A 214 1555 1555 2.66 LINK CU CU1 A 212 CU CU1 A 213 1555 1555 2.69 LINK CU CU1 A 213 CU CU1 A 214 1555 1555 2.67 LINK NA NA A 215 O HOH A 305 1555 1555 2.23 LINK NA NA A 215 O HOH A 320 1555 1555 2.21 LINK NA NA A 215 O HOH A 322 1555 1555 2.12 LINK NA NA A 215 O HOH A 329 1555 1555 1.95 SITE 1 AC1 7 CYS A 35 ASN A 58 CYS A 97 CYS A 118 SITE 2 AC1 7 CU1 A 212 CU1 A 213 CU1 A 214 SITE 1 AC2 5 CYS A 35 CYS A 114 CYS A 118 CU1 A 211 SITE 2 AC2 5 CU1 A 213 SITE 1 AC3 7 ASN A 58 CYS A 97 CYS A 101 CYS A 114 SITE 2 AC3 7 CU1 A 211 CU1 A 212 CU1 A 214 SITE 1 AC4 5 ASN A 58 CYS A 97 CYS A 101 CU1 A 211 SITE 2 AC4 5 CU1 A 213 SITE 1 AC5 6 ARG A 74 GLU A 79 HOH A 305 HOH A 320 SITE 2 AC5 6 HOH A 322 HOH A 329 CRYST1 44.650 106.680 45.620 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022396 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021920 0.00000