HEADER RNA BINDING PROTEIN 25-APR-17 5NS4 TITLE CRYSTAL STRUCTURES OF CY3 CYANINE FLUOROPHORES STACKED ONTO THE END OF TITLE 2 DOUBLE-STRANDED RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TL4,TTHL5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (34-MER); COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: RPLE, RPL5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 9 ORGANISM_TAXID: 274; SOURCE 10 EXPRESSION_SYSTEM: THERMUS THERMOPHILUS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 274 KEYWDS CY3, FLUOROPHORES, RNA, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.LIU,D.M.J.LILLEY REVDAT 2 17-JAN-24 5NS4 1 REMARK LINK REVDAT 1 20-DEC-17 5NS4 0 JRNL AUTH Y.LIU,D.M.J.LILLEY JRNL TITL CRYSTAL STRUCTURES OF CYANINE FLUOROPHORES STACKED ONTO THE JRNL TITL 2 END OF DOUBLE-STRANDED RNA. JRNL REF BIOPHYS. J. V. 113 2336 2017 JRNL REFN ESSN 1542-0086 JRNL PMID 29211987 JRNL DOI 10.1016/J.BPJ.2017.10.002 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0982 - 4.9905 0.99 2638 139 0.2362 0.2600 REMARK 3 2 4.9905 - 3.9617 0.99 2508 134 0.2198 0.2575 REMARK 3 3 3.9617 - 3.4611 1.00 2499 131 0.2494 0.2731 REMARK 3 4 3.4611 - 3.1448 1.00 2476 127 0.2626 0.3002 REMARK 3 5 3.1448 - 2.9194 1.00 2485 133 0.3074 0.3023 REMARK 3 6 2.9194 - 2.7473 1.00 2456 136 0.3202 0.3041 REMARK 3 7 2.7473 - 2.6097 1.00 2427 134 0.3311 0.3587 REMARK 3 8 2.6097 - 2.4961 1.00 2453 142 0.3241 0.3454 REMARK 3 9 2.4961 - 2.4000 1.00 2456 119 0.3161 0.3251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3801 REMARK 3 ANGLE : 1.531 5404 REMARK 3 CHIRALITY : 0.096 664 REMARK 3 PLANARITY : 0.008 464 REMARK 3 DIHEDRAL : 13.600 1648 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200003493. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979601 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23654 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.09978 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.16200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1MJI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CACODYLATE AT PH 6.5, 100 REMARK 280 MM MG(CH3COO)2, 50 MM KF, 15% PEG 8000 DROP, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.87850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.21600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.87850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.21600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 44 REMARK 465 GLU A 45 REMARK 465 ALA A 46 REMARK 465 LYS A 47 REMARK 465 GLU A 48 REMARK 465 ASP A 49 REMARK 465 ALA A 50 REMARK 465 ARG A 51 REMARK 465 LYS A 74 REMARK 465 LYS A 75 REMARK 465 SER A 76 REMARK 465 ILE A 77 REMARK 465 SER A 78 REMARK 465 ASN A 79 REMARK 465 PHE A 80 REMARK 465 LYS A 81 REMARK 465 LEU A 82 REMARK 465 ARG A 83 REMARK 465 LYS A 84 REMARK 465 ARG A 113 REMARK 465 ILE A 114 REMARK 465 ARG A 115 REMARK 465 ASP A 116 REMARK 465 PHE A 117 REMARK 465 ARG A 118 REMARK 465 LEU A 139 REMARK 465 ILE A 140 REMARK 465 PHE A 141 REMARK 465 PRO A 142 REMARK 465 GLU A 143 REMARK 465 ILE A 144 REMARK 465 THR A 145 REMARK 465 TYR A 146 REMARK 465 ASP A 147 REMARK 465 MET A 148 REMARK 465 VAL A 149 REMARK 465 ASP A 150 REMARK 465 ALA A 151 REMARK 465 LEU A 152 REMARK 465 ARG A 153 REMARK 465 ASP B 4 REMARK 465 GLY B 44 REMARK 465 GLU B 45 REMARK 465 ALA B 46 REMARK 465 LYS B 47 REMARK 465 GLU B 48 REMARK 465 ASP B 49 REMARK 465 ALA B 50 REMARK 465 LYS B 75 REMARK 465 SER B 76 REMARK 465 ILE B 77 REMARK 465 SER B 78 REMARK 465 ASN B 79 REMARK 465 PHE B 80 REMARK 465 LYS B 81 REMARK 465 LEU B 82 REMARK 465 ARG B 83 REMARK 465 ASP B 116 REMARK 465 ILE B 140 REMARK 465 PHE B 141 REMARK 465 PRO B 142 REMARK 465 GLU B 143 REMARK 465 ILE B 144 REMARK 465 THR B 145 REMARK 465 TYR B 146 REMARK 465 ASP B 147 REMARK 465 MET B 148 REMARK 465 VAL B 149 REMARK 465 ASP B 150 REMARK 465 ALA B 151 REMARK 465 LEU B 152 REMARK 465 ARG B 153 REMARK 465 A C 53 REMARK 465 C D 35 REMARK 465 A D 52 REMARK 465 A D 53 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 G C 41 C8 N7 C5 C6 O6 N1 C2 REMARK 470 G C 41 N2 N3 C4 REMARK 470 G D 41 C8 N7 C5 C6 O6 N1 C2 REMARK 470 G D 41 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 P U C 26 OBG 96T C 101 1.38 REMARK 500 P U C 26 CBF 96T C 101 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U C 48 O5' - P - OP2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 96 -139.17 50.32 REMARK 500 SER A 124 35.25 -89.43 REMARK 500 ARG B 96 -140.62 52.01 REMARK 500 GLU B 137 -175.06 -174.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 128 O REMARK 620 2 ASN A 130 OD1 95.0 REMARK 620 3 THR A 161 O 164.9 78.4 REMARK 620 4 ALA A 163 O 78.1 138.3 97.6 REMARK 620 5 HOH A 308 O 77.0 78.7 114.4 136.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 128 O REMARK 620 2 ASN B 130 OD1 96.2 REMARK 620 3 THR B 161 O 166.3 76.6 REMARK 620 4 ALA B 163 O 80.1 139.5 97.7 REMARK 620 5 HOH B 315 O 109.3 139.6 83.1 77.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C C 35 OP2 REMARK 620 2 C C 36 OP2 94.1 REMARK 620 3 HOH C 225 O 94.1 95.9 REMARK 620 4 HOH C 227 O 175.3 85.1 90.6 REMARK 620 5 HOH C 231 O 90.8 165.6 97.3 88.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 201 O REMARK 620 2 HOH C 203 O 89.0 REMARK 620 3 HOH C 220 O 88.3 87.4 REMARK 620 4 HOH C 230 O 88.0 93.3 176.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 201 O REMARK 620 2 HOH D 211 O 88.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 96T C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 101 DBREF 5NS4 A 4 181 UNP P41201 RL5_THETH 4 181 DBREF 5NS4 B 4 181 UNP P41201 RL5_THETH 4 181 DBREF 5NS4 C 26 58 PDB 5NS4 5NS4 26 58 DBREF 5NS4 D 26 58 PDB 5NS4 5NS4 26 58 SEQRES 1 A 178 ASP VAL ALA LEU LYS ARG LYS TYR TYR GLU GLU VAL ARG SEQRES 2 A 178 PRO GLU LEU ILE ARG ARG PHE GLY TYR GLN ASN VAL TRP SEQRES 3 A 178 GLU VAL PRO ARG LEU GLU LYS VAL VAL ILE ASN GLN GLY SEQRES 4 A 178 LEU GLY GLU ALA LYS GLU ASP ALA ARG ILE LEU GLU LYS SEQRES 5 A 178 ALA ALA GLN GLU LEU ALA LEU ILE THR GLY GLN LYS PRO SEQRES 6 A 178 ALA VAL THR ARG ALA LYS LYS SER ILE SER ASN PHE LYS SEQRES 7 A 178 LEU ARG LYS GLY MET PRO ILE GLY LEU ARG VAL THR LEU SEQRES 8 A 178 ARG ARG ASP ARG MET TRP ILE PHE LEU GLU LYS LEU LEU SEQRES 9 A 178 ASN VAL ALA LEU PRO ARG ILE ARG ASP PHE ARG GLY LEU SEQRES 10 A 178 ASN PRO ASN SER PHE ASP GLY ARG GLY ASN TYR ASN LEU SEQRES 11 A 178 GLY LEU ARG GLU GLN LEU ILE PHE PRO GLU ILE THR TYR SEQRES 12 A 178 ASP MET VAL ASP ALA LEU ARG GLY MET ASP ILE ALA VAL SEQRES 13 A 178 VAL THR THR ALA GLU THR ASP GLU GLU ALA ARG ALA LEU SEQRES 14 A 178 LEU GLU LEU LEU GLY PHE PRO PHE ARG SEQRES 1 B 178 ASP VAL ALA LEU LYS ARG LYS TYR TYR GLU GLU VAL ARG SEQRES 2 B 178 PRO GLU LEU ILE ARG ARG PHE GLY TYR GLN ASN VAL TRP SEQRES 3 B 178 GLU VAL PRO ARG LEU GLU LYS VAL VAL ILE ASN GLN GLY SEQRES 4 B 178 LEU GLY GLU ALA LYS GLU ASP ALA ARG ILE LEU GLU LYS SEQRES 5 B 178 ALA ALA GLN GLU LEU ALA LEU ILE THR GLY GLN LYS PRO SEQRES 6 B 178 ALA VAL THR ARG ALA LYS LYS SER ILE SER ASN PHE LYS SEQRES 7 B 178 LEU ARG LYS GLY MET PRO ILE GLY LEU ARG VAL THR LEU SEQRES 8 B 178 ARG ARG ASP ARG MET TRP ILE PHE LEU GLU LYS LEU LEU SEQRES 9 B 178 ASN VAL ALA LEU PRO ARG ILE ARG ASP PHE ARG GLY LEU SEQRES 10 B 178 ASN PRO ASN SER PHE ASP GLY ARG GLY ASN TYR ASN LEU SEQRES 11 B 178 GLY LEU ARG GLU GLN LEU ILE PHE PRO GLU ILE THR TYR SEQRES 12 B 178 ASP MET VAL ASP ALA LEU ARG GLY MET ASP ILE ALA VAL SEQRES 13 B 178 VAL THR THR ALA GLU THR ASP GLU GLU ALA ARG ALA LEU SEQRES 14 B 178 LEU GLU LEU LEU GLY PHE PRO PHE ARG SEQRES 1 C 33 U G C A C C U G A C C C C SEQRES 2 C 33 A U G C C G A A C U C A G SEQRES 3 C 33 A A G U G C A SEQRES 1 D 33 U G C A C C U G A C C C C SEQRES 2 D 33 A U G C C G A A C U C A G SEQRES 3 D 33 A A G U G C A HET MG A 201 1 HET MG B 201 1 HET 96T C 101 33 HET MG C 102 1 HET MG C 103 1 HET MG C 104 1 HET MG C 105 1 HET MG D 101 1 HETNAM MG MAGNESIUM ION HETNAM 96T 3-[(2~{Z})-2-[(~{E})-3-[3,3-DIMETHYL-1-(3- HETNAM 2 96T OXIDANYLPROPYL)INDOL-1-IUM-2-YL]PROP-2-ENYLIDENE]-3,3- HETNAM 3 96T DIMETHYL-INDOL-1-YL]PROPAN-1-OL FORMUL 5 MG 7(MG 2+) FORMUL 7 96T C29 H37 N2 O2 1+ FORMUL 13 HOH *72(H2 O) HELIX 1 AA1 VAL A 5 GLU A 14 1 10 HELIX 2 AA2 GLU A 14 GLY A 24 1 11 HELIX 3 AA3 ASN A 27 VAL A 31 5 5 HELIX 4 AA4 LEU A 53 GLY A 65 1 13 HELIX 5 AA5 ARG A 95 VAL A 109 1 15 HELIX 6 AA6 THR A 165 LEU A 176 1 12 HELIX 7 AA7 ALA B 6 GLU B 14 1 9 HELIX 8 AA8 GLU B 14 GLY B 24 1 11 HELIX 9 AA9 ASN B 27 VAL B 31 5 5 HELIX 10 AB1 ILE B 52 GLY B 65 1 14 HELIX 11 AB2 ARG B 95 VAL B 109 1 15 HELIX 12 AB3 VAL B 109 ILE B 114 1 6 HELIX 13 AB4 THR B 165 GLY B 177 1 13 SHEET 1 AA1 5 ALA A 69 ARG A 72 0 SHEET 2 AA1 5 PRO A 87 LEU A 94 -1 O ILE A 88 N THR A 71 SHEET 3 AA1 5 LEU A 34 GLY A 42 -1 N VAL A 37 O LEU A 94 SHEET 4 AA1 5 MET A 155 THR A 161 -1 O ASP A 156 N ASN A 40 SHEET 5 AA1 5 TYR A 131 LEU A 135 -1 N TYR A 131 O VAL A 159 SHEET 1 AA2 5 ALA B 69 ARG B 72 0 SHEET 2 AA2 5 PRO B 87 LEU B 94 -1 O ILE B 88 N THR B 71 SHEET 3 AA2 5 LEU B 34 GLY B 42 -1 N VAL B 37 O LEU B 94 SHEET 4 AA2 5 MET B 155 THR B 161 -1 O ASP B 156 N ASN B 40 SHEET 5 AA2 5 TYR B 131 LEU B 135 -1 N TYR B 131 O VAL B 159 LINK O ARG A 128 MG MG A 201 1555 1555 2.58 LINK OD1 ASN A 130 MG MG A 201 1555 1555 2.85 LINK O THR A 161 MG MG A 201 1555 1555 2.57 LINK O ALA A 163 MG MG A 201 1555 1555 2.66 LINK MG MG A 201 O HOH A 308 1555 1555 2.88 LINK O ARG B 128 MG MG B 201 1555 1555 2.51 LINK OD1 ASN B 130 MG MG B 201 1555 1555 2.89 LINK O THR B 161 MG MG B 201 1555 1555 2.58 LINK O ALA B 163 MG MG B 201 1555 1555 2.61 LINK MG MG B 201 O HOH B 315 1555 1555 2.80 LINK OP2 C C 35 MG MG C 104 1555 1555 2.01 LINK OP2 C C 36 MG MG C 104 1555 1555 2.03 LINK MG MG C 102 O HOH C 201 1555 1555 2.19 LINK MG MG C 102 O HOH C 203 1555 1555 2.16 LINK MG MG C 102 O HOH C 220 1555 1555 2.31 LINK MG MG C 102 O HOH C 230 1555 1555 2.07 LINK MG MG C 104 O HOH C 225 1555 1555 2.17 LINK MG MG C 104 O HOH C 227 1555 1555 2.15 LINK MG MG C 104 O HOH C 231 1555 1555 2.15 LINK MG MG C 105 O HOH C 222 1555 1555 2.51 LINK MG MG D 101 O HOH D 201 1555 1555 2.16 LINK MG MG D 101 O HOH D 211 1555 1555 2.16 CISPEP 1 GLY A 85 MET A 86 0 -15.32 SITE 1 AC1 5 ARG A 128 ASN A 130 THR A 161 ALA A 163 SITE 2 AC1 5 HOH A 308 SITE 1 AC2 6 ARG B 128 GLY B 129 ASN B 130 THR B 161 SITE 2 AC2 6 ALA B 163 HOH B 315 SITE 1 AC3 7 PRO B 112 ILE B 114 PHE B 117 ARG B 118 SITE 2 AC3 7 PRO B 179 U C 26 A C 58 SITE 1 AC4 4 HOH C 201 HOH C 203 HOH C 220 HOH C 230 SITE 1 AC5 1 A C 46 SITE 1 AC6 5 C C 35 C C 36 HOH C 225 HOH C 227 SITE 2 AC6 5 HOH C 231 SITE 1 AC7 1 HOH C 222 SITE 1 AC8 2 HOH D 201 HOH D 211 CRYST1 93.757 122.432 51.013 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019603 0.00000