HEADER TRANSFERASE 10-MAY-17 5NXL TITLE FORMYLGLYCINE GENERATING ENZYME FROM T. CURVATA IN COMPLEX WITH AG(I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: IN THE CRYSTAL STRUCTURE, HIS-TAG AND LOOP REGION FROM COMPND 7 V92 TO D100 ARE DISORDERED (ORIGINAL UNIPROT SEQUENCE NUMBERING). COMPND 8 THUS, THESE RESIDUES WERE NOT MODELED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOMONOSPORA CURVATA DSM 43183; SOURCE 3 ORGANISM_TAXID: 471852; SOURCE 4 ATCC: 19995; SOURCE 5 GENE: TCUR_4811; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FORMYLGLYCINE GENERATING ENZYME, SULFATASE MODIFICATION, METAL- KEYWDS 2 BINDING, SILVER COMPLEX, COPPER ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MEURY,M.KNOP,F.P.SEEBECK REVDAT 3 17-JAN-24 5NXL 1 REMARK LINK REVDAT 2 05-JUL-17 5NXL 1 JRNL REVDAT 1 07-JUN-17 5NXL 0 JRNL AUTH M.MEURY,M.KNOP,F.P.SEEBECK JRNL TITL STRUCTURAL BASIS FOR COPPER-OXYGEN MEDIATED C-H BOND JRNL TITL 2 ACTIVATION BY THE FORMYLGLYCINE-GENERATING ENZYME. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 8115 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28544744 JRNL DOI 10.1002/ANIE.201702901 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6453 - 3.6910 1.00 2980 152 0.1869 0.1951 REMARK 3 2 3.6910 - 2.9299 1.00 2856 141 0.1480 0.1692 REMARK 3 3 2.9299 - 2.5596 1.00 2817 148 0.1564 0.1641 REMARK 3 4 2.5596 - 2.3256 1.00 2825 133 0.1602 0.2122 REMARK 3 5 2.3256 - 2.1589 1.00 2783 137 0.1527 0.1827 REMARK 3 6 2.1589 - 2.0317 1.00 2784 136 0.1628 0.2111 REMARK 3 7 2.0317 - 1.9299 1.00 2769 140 0.1649 0.2111 REMARK 3 8 1.9299 - 1.8459 1.00 2805 122 0.1797 0.2574 REMARK 3 9 1.8459 - 1.7749 1.00 2738 144 0.1936 0.2151 REMARK 3 10 1.7749 - 1.7136 1.00 2753 152 0.2046 0.2636 REMARK 3 11 1.7136 - 1.6600 1.00 2749 147 0.2259 0.2571 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2350 REMARK 3 ANGLE : 0.819 3209 REMARK 3 CHIRALITY : 0.052 312 REMARK 3 PLANARITY : 0.006 434 REMARK 3 DIHEDRAL : 15.148 1301 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -9 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5487 13.4402 -37.0236 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.2046 REMARK 3 T33: 0.1851 T12: -0.0268 REMARK 3 T13: -0.0096 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.4388 L22: 5.2898 REMARK 3 L33: 6.2371 L12: -0.7071 REMARK 3 L13: -0.6681 L23: 5.5593 REMARK 3 S TENSOR REMARK 3 S11: -0.0760 S12: 0.1152 S13: 0.1939 REMARK 3 S21: -0.4626 S22: 0.0131 S23: 0.1731 REMARK 3 S31: -0.5010 S32: 0.0484 S33: 0.0289 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7584 2.9735 -24.3657 REMARK 3 T TENSOR REMARK 3 T11: 0.0526 T22: 0.1235 REMARK 3 T33: 0.1407 T12: -0.0277 REMARK 3 T13: -0.0112 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.0256 L22: 1.5676 REMARK 3 L33: 1.9506 L12: -0.2681 REMARK 3 L13: 0.2775 L23: -0.5797 REMARK 3 S TENSOR REMARK 3 S11: 0.0753 S12: 0.0163 S13: 0.0095 REMARK 3 S21: -0.0276 S22: -0.0135 S23: 0.0621 REMARK 3 S31: -0.0158 S32: -0.0832 S33: -0.0733 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9057 -9.1112 -9.1951 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1913 REMARK 3 T33: 0.1553 T12: 0.0003 REMARK 3 T13: 0.0047 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.3451 L22: 7.5238 REMARK 3 L33: 7.8453 L12: -3.9819 REMARK 3 L13: -3.7831 L23: 1.6950 REMARK 3 S TENSOR REMARK 3 S11: -0.1151 S12: -0.1685 S13: -0.2104 REMARK 3 S21: 0.3153 S22: 0.0652 S23: -0.2557 REMARK 3 S31: 0.1601 S32: 0.2839 S33: 0.1129 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9587 5.0812 -20.7514 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.1102 REMARK 3 T33: 0.1267 T12: -0.0046 REMARK 3 T13: 0.0040 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.1256 L22: 0.7188 REMARK 3 L33: 1.0389 L12: 0.1132 REMARK 3 L13: 0.0308 L23: -0.2805 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.0328 S13: 0.0745 REMARK 3 S21: 0.0311 S22: -0.0512 S23: -0.0575 REMARK 3 S31: -0.0069 S32: 0.0879 S33: 0.0177 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7002 -2.9653 -31.8881 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.1002 REMARK 3 T33: 0.1239 T12: -0.0104 REMARK 3 T13: 0.0141 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.6908 L22: 0.6495 REMARK 3 L33: 2.0295 L12: 0.1949 REMARK 3 L13: 0.8059 L23: 0.1667 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: 0.0394 S13: -0.1464 REMARK 3 S21: -0.1008 S22: -0.0047 S23: 0.0028 REMARK 3 S31: 0.2611 S32: -0.0916 S33: -0.0509 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2348 -1.8703 -23.5468 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.0880 REMARK 3 T33: 0.0931 T12: -0.0125 REMARK 3 T13: 0.0043 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.3222 L22: 1.1492 REMARK 3 L33: 2.0169 L12: -0.2542 REMARK 3 L13: 0.4199 L23: -0.1027 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: 0.0115 S13: -0.0489 REMARK 3 S21: 0.0258 S22: -0.0499 S23: -0.0639 REMARK 3 S31: 0.1411 S32: 0.0408 S33: -0.0091 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004871. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 - 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 40.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.94800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Q17 REMARK 200 REMARK 200 REMARK: PLATE-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SODIUM ACETATE AND CALCIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.47350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.75050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.78600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.75050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.47350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.78600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 ALA A 93 REMARK 465 PRO A 94 REMARK 465 GLY A 95 REMARK 465 THR A 96 REMARK 465 PRO A 97 REMARK 465 VAL A 98 REMARK 465 MET A 99 REMARK 465 LEU A 303 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA A -9 REMARK 475 VAL A 92 REMARK 475 ASP A 100 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A -8 CB CG CD OE1 OE2 REMARK 480 HIS A 91 CG ND1 CD2 CE1 NE2 REMARK 480 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -7 22.08 -73.78 REMARK 500 PRO A 24 41.74 -81.39 REMARK 500 HIS A 91 40.54 -91.95 REMARK 500 ALA A 106 69.51 -155.39 REMARK 500 LYS A 152 -165.99 -125.81 REMARK 500 ILE A 189 -158.53 -129.45 REMARK 500 THR A 205 67.43 -106.95 REMARK 500 PHE A 213 178.46 65.24 REMARK 500 ASN A 226 -80.78 71.76 REMARK 500 TYR A 273 -27.46 -148.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 188 OD1 REMARK 620 2 ILE A 189 O 101.9 REMARK 620 3 ASP A 202 OD1 87.8 122.6 REMARK 620 4 ASP A 202 OD2 87.1 72.1 51.9 REMARK 620 5 TYR A 204 O 95.9 150.1 81.6 133.3 REMARK 620 6 HOH A 542 O 173.1 82.7 85.4 89.5 82.1 REMARK 620 7 HOH A 553 O 95.9 76.8 159.1 148.7 77.5 90.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 222 O REMARK 620 2 VAL A 223 O 75.0 REMARK 620 3 GLY A 225 O 72.8 110.6 REMARK 620 4 VAL A 227 O 121.5 160.0 86.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 401 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 269 SG REMARK 620 2 CYS A 274 SG 177.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 416 DBREF 5NXL A 20 303 UNP D1A7C3 D1A7C3_THECD 20 303 SEQADV 5NXL GLY A -16 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL HIS A -15 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL HIS A -14 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL HIS A -13 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL HIS A -12 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL HIS A -11 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL HIS A -10 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL ALA A -9 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL GLU A -8 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL ASN A -7 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL LEU A -6 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL TYR A -5 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL PHE A -4 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL GLN A -3 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL GLY A -2 UNP D1A7C3 EXPRESSION TAG SEQADV 5NXL HIS A -1 UNP D1A7C3 EXPRESSION TAG SEQRES 1 A 300 GLY HIS HIS HIS HIS HIS HIS ALA GLU ASN LEU TYR PHE SEQRES 2 A 300 GLN GLY HIS MET VAL ALA ILE PRO GLY GLY THR PHE ARG SEQRES 3 A 300 MET GLY GLY GLU ASP PRO ASP ALA PHE PRO GLU ASP GLY SEQRES 4 A 300 GLU GLY PRO VAL ARG THR VAL ARG LEU SER PRO PHE LEU SEQRES 5 A 300 ILE ASP ARG TYR ALA VAL SER ASN ARG GLN PHE ALA ALA SEQRES 6 A 300 PHE VAL LYS ALA THR GLY TYR VAL THR ASP ALA GLU ARG SEQRES 7 A 300 TYR GLY TRP SER PHE VAL PHE HIS ALA HIS VAL ALA PRO SEQRES 8 A 300 GLY THR PRO VAL MET ASP ALA VAL VAL PRO GLU ALA PRO SEQRES 9 A 300 TRP TRP VAL ALA VAL PRO GLY ALA TYR TRP LYS ALA PRO SEQRES 10 A 300 GLU GLY PRO GLY SER SER ILE THR ASP ARG PRO ASN HIS SEQRES 11 A 300 PRO VAL VAL HIS VAL SER TRP ASN ASP ALA VAL ALA TYR SEQRES 12 A 300 ALA THR TRP ALA GLY LYS ARG LEU PRO THR GLU ALA GLU SEQRES 13 A 300 TRP GLU MET ALA ALA ARG GLY GLY LEU ASP GLN ALA ARG SEQRES 14 A 300 TYR PRO TRP GLY ASN GLU LEU THR PRO ARG GLY ARG HIS SEQRES 15 A 300 ARG CYS ASN ILE TRP GLN GLY THR PHE PRO VAL HIS ASP SEQRES 16 A 300 THR GLY GLU ASP GLY TYR THR GLY THR ALA PRO VAL ASN SEQRES 17 A 300 ALA PHE ALA PRO ASN GLY TYR GLY LEU TYR ASN VAL ALA SEQRES 18 A 300 GLY ASN VAL TRP GLU TRP CYS ALA ASP TRP TRP SER ALA SEQRES 19 A 300 ASP TRP HIS ALA THR GLU SER PRO ALA THR ARG ILE ASP SEQRES 20 A 300 PRO ARG GLY PRO GLU THR GLY THR ALA ARG VAL THR LYS SEQRES 21 A 300 GLY GLY SER PHE LEU CYS HIS GLU SER TYR CYS ASN ARG SEQRES 22 A 300 TYR ARG VAL ALA ALA ARG THR CYS ASN THR PRO ASP SER SEQRES 23 A 300 SER ALA ALA HIS THR GLY PHE ARG CYS ALA ALA ASP PRO SEQRES 24 A 300 LEU HET AG A 401 1 HET MPD A 402 8 HET ACT A 403 4 HET ACT A 404 4 HET ACT A 405 4 HET ACT A 406 4 HET ACT A 407 4 HET ACT A 408 4 HET ACT A 409 4 HET ACT A 410 4 HET ACT A 411 4 HET ACT A 412 4 HET ACT A 413 4 HET ACT A 414 4 HET CA A 415 1 HET CA A 416 1 HETNAM AG SILVER ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION FORMUL 2 AG AG 1+ FORMUL 3 MPD C6 H14 O2 FORMUL 4 ACT 12(C2 H3 O2 1-) FORMUL 16 CA 2(CA 2+) FORMUL 18 HOH *199(H2 O) HELIX 1 AA1 PHE A 38 GLY A 42 5 5 HELIX 2 AA2 SER A 62 GLY A 74 1 13 HELIX 3 AA3 THR A 77 GLY A 83 1 7 HELIX 4 AA4 SER A 139 ALA A 150 1 12 HELIX 5 AA5 THR A 156 GLY A 166 1 11 HELIX 6 AA6 THR A 180 ARG A 184 5 5 HELIX 7 AA7 ASP A 238 THR A 242 5 5 HELIX 8 AA8 SER A 244 ILE A 249 1 6 SHEET 1 AA1 4 TYR A -5 GLN A -3 0 SHEET 2 AA1 4 MET A 20 ILE A 23 -1 O ALA A 22 N TYR A -5 SHEET 3 AA1 4 PHE A 54 ASP A 57 -1 O PHE A 54 N ILE A 23 SHEET 4 AA1 4 ALA A 299 ALA A 300 -1 O ALA A 300 N LEU A 55 SHEET 1 AA2 2 GLY A 26 MET A 30 0 SHEET 2 AA2 2 ARG A 47 LEU A 51 -1 O ARG A 47 N MET A 30 SHEET 1 AA3 3 TRP A 84 PHE A 88 0 SHEET 2 AA3 3 ALA A 106 PRO A 113 -1 O VAL A 110 N VAL A 87 SHEET 3 AA3 3 VAL A 102 VAL A 103 -1 N VAL A 103 O TRP A 109 SHEET 1 AA4 2 GLY A 192 THR A 193 0 SHEET 2 AA4 2 HIS A 197 ASP A 198 -1 O HIS A 197 N THR A 193 SHEET 1 AA5 4 THR A 283 ASN A 285 0 SHEET 2 AA5 4 ARG A 260 LYS A 263 -1 N ARG A 260 O ASN A 285 SHEET 3 AA5 4 TRP A 228 TRP A 234 -1 N CYS A 231 O VAL A 261 SHEET 4 AA5 4 THR A 294 GLY A 295 1 O GLY A 295 N TRP A 228 LINK OD1 ASN A 188 CA CA A 415 1555 1555 2.29 LINK O ILE A 189 CA CA A 415 1555 1555 2.32 LINK OD1 ASP A 202 CA CA A 415 1555 1555 2.52 LINK OD2 ASP A 202 CA CA A 415 1555 1555 2.50 LINK O TYR A 204 CA CA A 415 1555 1555 2.39 LINK O ASN A 222 CA CA A 416 1555 1555 3.09 LINK O VAL A 223 CA CA A 416 1555 1555 2.66 LINK O GLY A 225 CA CA A 416 1555 1555 2.61 LINK O VAL A 227 CA CA A 416 1555 1555 2.55 LINK SG CYS A 269 AG AG A 401 1555 1555 2.28 LINK SG CYS A 274 AG AG A 401 1555 1555 2.27 LINK CA CA A 415 O HOH A 542 1555 1555 2.35 LINK CA CA A 415 O HOH A 553 1555 1555 2.49 CISPEP 1 GLY A 44 PRO A 45 0 -1.47 CISPEP 2 PHE A 194 PRO A 195 0 1.12 SITE 1 AC1 3 CYS A 269 CYS A 274 ARG A 276 SITE 1 AC2 6 GLY A 83 PRO A 113 GLY A 114 ASP A 169 SITE 2 AC2 6 HOH A 505 HOH A 597 SITE 1 AC3 7 HIS A -1 GLN A 65 TYR A 146 LYS A 152 SITE 2 AC3 7 THR A 256 ACT A 404 HOH A 509 SITE 1 AC4 6 HIS A -1 GLY A -2 MET A 20 LYS A 152 SITE 2 AC4 6 THR A 256 ACT A 403 SITE 1 AC5 2 TRP A 109 ASN A 285 SITE 1 AC6 4 ARG A 172 TYR A 173 ASN A 177 LEU A 179 SITE 1 AC7 6 PRO A 39 ASP A 129 ARG A 130 PRO A 131 SITE 2 AC7 6 ASN A 132 HIS A 133 SITE 1 AC8 4 GLU A 40 PHE A 213 ALA A 214 HOH A 501 SITE 1 AC9 4 SER A 126 THR A 128 THR A 242 GLU A 243 SITE 1 AD1 2 TYR A 116 LYS A 118 SITE 1 AD2 4 TYR A 221 TYR A 273 ARG A 276 HOH A 534 SITE 1 AD3 4 GLN A 191 GLY A 192 HIS A 270 HOH A 619 SITE 1 AD4 5 ARG A 29 VAL A 46 ARG A 47 THR A 48 SITE 2 AD4 5 HOH A 521 SITE 1 AD5 6 TRP A 140 ARG A 153 LEU A 154 HOH A 510 SITE 2 AD5 6 HOH A 528 HOH A 648 SITE 1 AD6 6 ASN A 188 ILE A 189 ASP A 202 TYR A 204 SITE 2 AD6 6 HOH A 542 HOH A 553 SITE 1 AD7 6 ASN A 222 VAL A 223 GLY A 225 VAL A 227 SITE 2 AD7 6 GLU A 229 GLY A 265 CRYST1 40.947 65.572 99.501 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010050 0.00000