data_5NY8 # _entry.id 5NY8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5NY8 pdb_00005ny8 10.2210/pdb5ny8/pdb WWPDB D_1200004925 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-18 2 'Structure model' 1 1 2017-11-29 3 'Structure model' 2 0 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' atom_site 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_atom_site.occupancy' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_struct_conn.conn_type_id' 8 3 'Structure model' '_struct_conn.id' 9 3 'Structure model' '_struct_conn.pdbx_dist_value' 10 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 3 'Structure model' '_struct_conn_type.id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NY8 _pdbx_database_status.recvd_initial_deposition_date 2017-05-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, L.' 1 ? 'Wang, J.' 2 ? 'Lilley, D.M.J.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2451-9456 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first 1407 _citation.page_last 1415.e2 _citation.title 'Structure of the Guanidine III Riboswitch.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2017.08.021 _citation.pdbx_database_id_PubMed 28988949 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Wang, J.' 2 ? primary 'Wilson, T.J.' 3 ? primary 'Lilley, D.M.J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (41-MER)' 13381.916 2 ? ? ? ? 2 non-polymer syn AMINOGUANIDINE 74.085 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 20 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CCGGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGG(CBV)GC' _entity_poly.pdbx_seq_one_letter_code_can CCGGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGGCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 AMINOGUANIDINE AGU 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 G n 1 4 G n 1 5 A n 1 6 C n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 G n 1 15 C n 1 16 C n 1 17 G n 1 18 U n 1 19 A n 1 20 C n 1 21 C n 1 22 C n 1 23 G n 1 24 G n 1 25 U n 1 26 C n 1 27 A n 1 28 G n 1 29 G n 1 30 A n 1 31 C n 1 32 A n 1 33 A n 1 34 G n 1 35 A n 1 36 C n 1 37 G n 1 38 G n 1 39 CBV n 1 40 G n 1 41 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 41 _pdbx_entity_src_syn.organism_scientific 'Thermobifida fusca' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 2021 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AGU non-polymer . AMINOGUANIDINE ? 'C H6 N4' 74.085 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 A 19 19 19 A A A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 C 26 26 26 C C A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 C 31 31 31 C C A . n A 1 32 A 32 32 32 A A A . n A 1 33 A 33 33 33 A A A . n A 1 34 G 34 34 34 G G A . n A 1 35 A 35 35 35 A A A . n A 1 36 C 36 36 36 C C A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 CBV 39 39 39 CBV CBV A . n A 1 40 G 40 40 40 G G A . n A 1 41 C 41 41 41 C C A . n B 1 1 C 1 1 1 C C B . n B 1 2 C 2 2 2 C C B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n B 1 15 C 15 15 15 C C B . n B 1 16 C 16 16 16 C C B . n B 1 17 G 17 17 17 G G B . n B 1 18 U 18 18 18 U U B . n B 1 19 A 19 19 19 A A B . n B 1 20 C 20 20 20 C C B . n B 1 21 C 21 21 21 C C B . n B 1 22 C 22 22 22 C C B . n B 1 23 G 23 23 23 G G B . n B 1 24 G 24 24 24 G G B . n B 1 25 U 25 25 25 U U B . n B 1 26 C 26 26 26 C C B . n B 1 27 A 27 27 27 A A B . n B 1 28 G 28 28 28 G G B . n B 1 29 G 29 29 29 G G B . n B 1 30 A 30 30 30 A A B . n B 1 31 C 31 31 31 C C B . n B 1 32 A 32 32 32 A A B . n B 1 33 A 33 33 33 A A B . n B 1 34 G 34 34 34 G G B . n B 1 35 A 35 35 35 A A B . n B 1 36 C 36 36 36 C C B . n B 1 37 G 37 37 37 G G B . n B 1 38 G 38 38 38 G G B . n B 1 39 CBV 39 39 39 CBV CBV B . n B 1 40 G 40 40 40 G G B . n B 1 41 C 41 41 41 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AGU 1 101 1 AGU AGU A . D 3 MG 1 102 1 MG MG A . E 3 MG 1 103 2 MG MG A . F 4 NA 1 104 1 NA NA A . G 3 MG 1 101 3 MG MG B . H 5 HOH 1 201 15 HOH HOH A . H 5 HOH 2 202 1 HOH HOH A . H 5 HOH 3 203 17 HOH HOH A . H 5 HOH 4 204 12 HOH HOH A . H 5 HOH 5 205 19 HOH HOH A . H 5 HOH 6 206 4 HOH HOH A . H 5 HOH 7 207 5 HOH HOH A . H 5 HOH 8 208 7 HOH HOH A . H 5 HOH 9 209 3 HOH HOH A . H 5 HOH 10 210 10 HOH HOH A . H 5 HOH 11 211 14 HOH HOH A . H 5 HOH 12 212 2 HOH HOH A . H 5 HOH 13 213 6 HOH HOH A . H 5 HOH 14 214 9 HOH HOH A . H 5 HOH 15 215 8 HOH HOH A . H 5 HOH 16 216 13 HOH HOH A . H 5 HOH 17 217 16 HOH HOH A . H 5 HOH 18 218 11 HOH HOH A . H 5 HOH 19 219 18 HOH HOH A . I 5 HOH 1 201 20 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev_2219: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5NY8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 83.390 _cell.length_a_esd ? _cell.length_b 83.390 _cell.length_b_esd ? _cell.length_c 66.330 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NY8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1MSodium chloride, 0.02M Magnesium chloride hexahydrate, 0.05M BisTris7.0, 30% v/vMPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-04-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92019 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.92019 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5NY8 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.040 _reflns.d_resolution_low 25.96 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 32303 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.58 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.64 _reflns.pdbx_Rmerge_I_obs 0.0488 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.68 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.023 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.9991 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.04 _reflns_shell.d_res_low 2.08 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 842 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.023 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.462 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.539 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5NY8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.040 _refine.ls_d_res_low 25.955 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 32303 _refine.ls_number_reflns_R_free 1605 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.39 _refine.ls_percent_reflns_R_free 4.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1907 _refine.ls_R_factor_R_free 0.2251 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1889 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.93 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.34 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1766 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 1795 _refine_hist.d_res_high 2.040 _refine_hist.d_res_low 25.955 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1980 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.861 ? 3090 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 13.753 ? 960 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.053 ? 406 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 ? 83 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0402 2.1061 . . 169 2766 100.00 . . . 0.3638 . 0.3227 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1061 2.1813 . . 127 2864 99.00 . . . 0.3295 . 0.3217 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1813 2.2686 . . 143 2840 100.00 . . . 0.3195 . 0.2933 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2686 2.3718 . . 132 2838 99.00 . . . 0.3189 . 0.2757 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3718 2.4967 . . 159 2772 99.00 . . . 0.3451 . 0.2812 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4967 2.6530 . . 175 2812 99.00 . . . 0.3575 . 0.2903 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6530 2.8576 . . 142 2789 99.00 . . . 0.3958 . 0.2940 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8576 3.1447 . . 136 2773 98.00 . . . 0.2693 . 0.2224 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1447 3.5988 . . 155 2745 97.00 . . . 0.1407 . 0.1554 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5988 4.5301 . . 140 2725 96.00 . . . 0.1880 . 0.1485 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.5301 25.9575 . . 127 2774 96.00 . . . 0.2012 . 0.1484 . . . . . . . . . . # _struct.entry_id 5NY8 _struct.title 'The structure of the thermobifida fusca guanidine III riboswitch with aminoguanidine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NY8 _struct_keywords.text 'guanidine III riboswitch, stem-loop, pseudoknot, RNA, gene regulation' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5NY8 _struct_ref.pdbx_db_accession 5NY8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5NY8 A 1 ? 41 ? 5NY8 1 ? 41 ? 1 41 2 1 5NY8 B 1 ? 41 ? 5NY8 1 ? 41 ? 1 41 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,H 2 1 B,G,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 38 "O3'" ? ? ? 1_555 A CBV 39 P ? ? A G 38 A CBV 39 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale2 covale one ? A CBV 39 "O3'" ? ? ? 1_555 A G 40 P ? ? A CBV 39 A G 40 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale3 covale both ? B G 38 "O3'" ? ? ? 1_555 B CBV 39 P ? ? B G 38 B CBV 39 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale4 covale one ? B CBV 39 "O3'" ? ? ? 1_555 B G 40 P ? ? B CBV 39 B G 40 1_555 ? ? ? ? ? ? ? 1.589 ? ? metalc1 metalc ? ? A G 12 O6 ? ? ? 1_555 F NA . NA ? ? A G 12 A NA 104 1_555 ? ? ? ? ? ? ? 2.809 ? ? metalc2 metalc ? ? A A 30 OP2 ? ? ? 1_555 D MG . MG ? ? A A 30 A MG 102 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc3 metalc ? ? A C 31 OP2 ? ? ? 1_555 D MG . MG ? ? A C 31 A MG 102 1_555 ? ? ? ? ? ? ? 1.847 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 204 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 216 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 103 A HOH 218 1_555 ? ? ? ? ? ? ? 1.804 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 A A 19 N6 ? ? A A 5 A A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 A A 19 N7 ? ? A A 5 A A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A U 18 O4 ? ? A C 6 A U 18 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog16 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 34 N2 ? ? A C 6 A G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog17 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 34 N1 ? ? A C 6 A G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog18 hydrog ? ? A G 7 N1 ? ? ? 1_555 A A 35 N7 ? ? A G 7 A A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 A A 35 N6 ? ? A G 7 A A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog20 hydrog ? ? A A 8 N1 ? ? ? 1_555 A C 36 N4 ? ? A A 8 A C 36 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog21 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 9 A C 16 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 37 O6 ? ? A G 9 A G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 37 N7 ? ? A G 9 A G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 38 O6 ? ? A G 10 A G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 38 N7 ? ? A G 10 A G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A G 14 O6 ? ? A U 11 A G 14 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog28 hydrog ? ? A U 11 O4 ? ? ? 1_555 A CBV 39 N4 ? ? A U 11 A CBV 39 1_555 ? ? ? ? ? ? 'U-CBV MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 14 N1 ? ? ? 1_555 A CBV 39 N3 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 14 N2 ? ? ? 1_555 A CBV 39 O2 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 14 O6 ? ? ? 1_555 A CBV 39 N4 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 18 O4 ? ? ? 1_555 A G 34 N2 ? ? A U 18 A G 34 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog48 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 18 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 18 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 19 N6 ? ? ? 1_555 A G 34 N3 ? ? A A 19 A G 34 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog51 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 27 N3 ? ? A G 23 A A 27 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog55 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 32 N1 ? ? A G 29 A A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog56 hydrog ? ? A G 29 N3 ? ? ? 1_555 A A 32 N6 ? ? A G 29 A A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog57 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 23 N1 ? ? B C 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 23 O6 ? ? B C 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 23 N2 ? ? B C 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 22 N3 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 22 O2 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 22 N4 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B A 5 N1 ? ? ? 1_555 B A 19 N6 ? ? B A 5 B A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog70 hydrog ? ? B A 5 N6 ? ? ? 1_555 B A 19 N7 ? ? B A 5 B A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog71 hydrog ? ? B C 6 N4 ? ? ? 1_555 B U 18 O4 ? ? B C 6 B U 18 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog72 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 34 N2 ? ? B C 6 B G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog73 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 34 N1 ? ? B C 6 B G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog74 hydrog ? ? B G 7 N1 ? ? ? 1_555 B A 35 N7 ? ? B G 7 B A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog75 hydrog ? ? B G 7 O6 ? ? ? 1_555 B A 35 N6 ? ? B G 7 B A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog76 hydrog ? ? B A 8 N1 ? ? ? 1_555 B C 36 N4 ? ? B A 8 B C 36 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog77 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 9 B C 16 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog78 hydrog ? ? B G 9 N1 ? ? ? 1_555 B G 37 O6 ? ? B G 9 B G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog79 hydrog ? ? B G 9 N2 ? ? ? 1_555 B G 37 N7 ? ? B G 9 B G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog80 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 10 B C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog81 hydrog ? ? B G 10 N1 ? ? ? 1_555 B G 38 O6 ? ? B G 10 B G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog82 hydrog ? ? B G 10 N2 ? ? ? 1_555 B G 38 N7 ? ? B G 10 B G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog83 hydrog ? ? B U 11 N3 ? ? ? 1_555 B G 14 O6 ? ? B U 11 B G 14 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog84 hydrog ? ? B U 11 O4 ? ? ? 1_555 B CBV 39 N4 ? ? B U 11 B CBV 39 1_555 ? ? ? ? ? ? 'U-CBV MISPAIR' ? ? ? hydrog85 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 40 N1 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 40 O6 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 40 N2 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 14 N1 ? ? ? 1_555 B CBV 39 N3 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 14 N2 ? ? ? 1_555 B CBV 39 O2 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 14 O6 ? ? ? 1_555 B CBV 39 N4 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 38 N1 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 38 O6 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 38 N2 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 37 N1 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 37 O6 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 37 N2 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 36 N3 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 36 O2 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 36 N4 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B U 18 N3 ? ? ? 1_555 B A 35 N1 ? ? B U 18 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B U 18 O4 ? ? ? 1_555 B A 35 N6 ? ? B U 18 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B A 19 N6 ? ? ? 1_555 B G 34 N3 ? ? B A 19 B G 34 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog106 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 23 N2 ? ? ? 1_555 B A 27 N3 ? ? B G 23 B A 27 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog110 hydrog ? ? B G 29 N2 ? ? ? 1_555 B A 32 N1 ? ? B G 29 B A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog111 hydrog ? ? B G 29 N3 ? ? ? 1_555 B A 32 N6 ? ? B G 29 B A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 30 ? A A 30 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 OP2 ? A C 31 ? A C 31 ? 1_555 94.0 ? 2 OP2 ? A A 30 ? A A 30 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 204 ? 1_555 87.3 ? 3 OP2 ? A C 31 ? A C 31 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 204 ? 1_555 83.3 ? 4 OP2 ? A A 30 ? A A 30 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 216 ? 1_555 170.9 ? 5 OP2 ? A C 31 ? A C 31 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 216 ? 1_555 93.1 ? 6 O ? H HOH . ? A HOH 204 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 216 ? 1_555 87.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AGU 101 ? 5 'binding site for residue AGU A 101' AC2 Software A MG 102 ? 4 'binding site for residue MG A 102' AC3 Software A MG 103 ? 1 'binding site for residue MG A 103' AC4 Software A NA 104 ? 2 'binding site for residue NA A 104' AC5 Software B MG 101 ? 1 'binding site for residue MG B 101' AC6 Software B G 38 ? 7 'binding site for Di-nucleotide G B 38 and CBV B 39' AC7 Software B CBV 39 ? 7 'binding site for Di-nucleotide CBV B 39 and G B 40' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 C A 6 ? C A 6 . ? 1_555 ? 2 AC1 5 G A 7 ? G A 7 . ? 1_555 ? 3 AC1 5 A A 8 ? A A 8 . ? 1_555 ? 4 AC1 5 C A 16 ? C A 16 . ? 1_555 ? 5 AC1 5 G A 17 ? G A 17 . ? 1_555 ? 6 AC2 4 A A 30 ? A A 30 . ? 1_555 ? 7 AC2 4 C A 31 ? C A 31 . ? 1_555 ? 8 AC2 4 HOH H . ? HOH A 204 . ? 1_555 ? 9 AC2 4 HOH H . ? HOH A 216 . ? 1_555 ? 10 AC3 1 HOH H . ? HOH A 218 . ? 1_555 ? 11 AC4 2 U A 11 ? U A 11 . ? 1_555 ? 12 AC4 2 G A 12 ? G A 12 . ? 1_555 ? 13 AC5 1 U B 11 ? U B 11 . ? 1_555 ? 14 AC6 7 G B 10 ? G B 10 . ? 1_555 ? 15 AC6 7 U B 11 ? U B 11 . ? 1_555 ? 16 AC6 7 G B 14 ? G B 14 . ? 1_555 ? 17 AC6 7 C B 15 ? C B 15 . ? 1_555 ? 18 AC6 7 C B 16 ? C B 16 . ? 1_555 ? 19 AC6 7 G B 37 ? G B 37 . ? 1_555 ? 20 AC6 7 G B 40 ? G B 40 . ? 1_555 ? 21 AC7 7 U B 11 ? U B 11 . ? 1_555 ? 22 AC7 7 G B 12 ? G B 12 . ? 1_555 ? 23 AC7 7 C B 13 ? C B 13 . ? 1_555 ? 24 AC7 7 G B 14 ? G B 14 . ? 1_555 ? 25 AC7 7 C B 15 ? C B 15 . ? 1_555 ? 26 AC7 7 G B 38 ? G B 38 . ? 1_555 ? 27 AC7 7 C B 41 ? C B 41 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" A G 38 ? ? O3P A CBV 39 ? ? 0.38 2 1 "HO2'" A G 4 ? ? "H5'" A G 29 ? ? 1.03 3 1 "O2'" A G 4 ? ? "H5'" A G 29 ? ? 1.06 4 1 "HO2'" A G 29 ? ? O A HOH 202 ? ? 1.55 5 1 "C3'" A G 38 ? ? O3P A CBV 39 ? ? 1.79 6 1 O A HOH 217 ? ? O A HOH 219 ? ? 2.06 7 1 O A HOH 210 ? ? O A HOH 214 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "HO2'" B G 7 ? ? 1_555 H41 B C 26 ? ? 2_435 1.24 2 1 "HO2'" B G 7 ? ? 1_555 N4 B C 26 ? ? 2_435 1.47 3 1 "O2'" B G 7 ? ? 1_555 N4 B C 26 ? ? 2_435 2.01 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 114.02 108.50 5.52 0.70 N 2 1 N1 A G 14 ? ? C6 A G 14 ? ? O6 A G 14 ? ? 124.00 119.90 4.10 0.60 N 3 1 C5 A G 17 ? ? C6 A G 17 ? ? O6 A G 17 ? ? 124.76 128.60 -3.84 0.60 N 4 1 N3 A G 38 ? ? C2 A G 38 ? ? N2 A G 38 ? ? 115.15 119.90 -4.75 0.70 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 205 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 39.0499 -24.2947 -12.7480 0.4858 0.5165 0.3311 0.0008 -0.0102 0.0308 7.9697 1.7157 2.1754 2.6198 0.7838 0.6492 -0.0293 -0.3038 0.1723 -0.0285 -0.0610 0.0845 -0.0804 0.1043 -0.0154 'X-RAY DIFFRACTION' 2 ? refined 25.3856 -22.9860 -11.0593 0.4394 0.5157 0.4169 0.0225 0.0094 -0.0927 5.1116 3.2855 5.3292 1.8651 0.2047 0.6940 -0.1051 -0.1154 0.3640 0.2056 -0.1651 0.7251 -0.0913 -0.5298 0.3536 'X-RAY DIFFRACTION' 3 ? refined 21.8749 -31.9796 -15.9385 0.5777 0.6458 0.4457 -0.0515 -0.0101 -0.0484 1.7789 1.6049 0.9901 1.2958 1.3845 0.8869 -0.0578 -0.1032 -0.1228 0.1273 -0.1678 0.1897 0.2762 0.0847 0.0576 'X-RAY DIFFRACTION' 4 ? refined 39.4272 -19.9585 -13.3757 0.4775 0.4973 0.3657 -0.0318 0.0099 0.0337 3.1224 1.9627 3.8303 -0.1124 0.8491 0.1366 -0.1065 0.0178 0.4262 -0.0655 -0.0513 -0.0020 -0.1914 0.0499 0.1861 'X-RAY DIFFRACTION' 5 ? refined 32.2887 -53.8885 -12.4929 0.4010 1.3240 0.9952 0.0982 -0.1056 -0.2529 2.2164 0.0135 1.0172 -0.3595 -1.4281 0.2558 0.0569 0.0173 -1.0167 0.5021 0.3712 -0.9005 0.1916 1.2754 0.1849 'X-RAY DIFFRACTION' 6 ? refined 46.0401 -52.8696 -13.6412 0.4227 1.3481 1.8800 0.0283 -0.1394 -0.2801 4.1690 5.0783 1.2438 -4.4596 1.6194 -1.3890 -0.0304 -0.0492 -0.8778 0.3390 0.5980 -2.3002 -0.3465 0.3844 -0.1760 'X-RAY DIFFRACTION' 7 ? refined 48.5310 -62.6309 -17.1940 1.2282 2.2462 3.3518 0.2119 -0.0155 -1.1126 2.4266 7.3103 2.0028 1.4077 -2.1252 -9.1043 0.0747 1.2205 -2.7218 -2.8727 1.1769 -2.2317 2.6112 2.9576 -0.2309 'X-RAY DIFFRACTION' 8 ? refined 32.2621 -51.7499 -9.1451 0.4402 0.9680 0.9369 0.0840 -0.0203 0.1300 5.0424 5.2466 7.2770 -0.9108 1.5403 -0.0698 -0.0324 -0.6942 -0.9218 0.5739 0.0570 -1.0981 0.1770 0.7376 -0.1502 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 15 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 16 through 25 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 26 through 30 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 31 through 41 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 15 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 16 through 25 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 26 through 30 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 31 through 41 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AGU C C N N 38 AGU N1 N N N 39 AGU N2 N N N 40 AGU N3 N N N 41 AGU N4 N N N 42 AGU HN1 H N N 43 AGU HN21 H N N 44 AGU HN22 H N N 45 AGU HN3 H N N 46 AGU HN41 H N N 47 AGU HN42 H N N 48 C OP3 O N N 49 C P P N N 50 C OP1 O N N 51 C OP2 O N N 52 C "O5'" O N N 53 C "C5'" C N N 54 C "C4'" C N R 55 C "O4'" O N N 56 C "C3'" C N S 57 C "O3'" O N N 58 C "C2'" C N R 59 C "O2'" O N N 60 C "C1'" C N R 61 C N1 N N N 62 C C2 C N N 63 C O2 O N N 64 C N3 N N N 65 C C4 C N N 66 C N4 N N N 67 C C5 C N N 68 C C6 C N N 69 C HOP3 H N N 70 C HOP2 H N N 71 C "H5'" H N N 72 C "H5''" H N N 73 C "H4'" H N N 74 C "H3'" H N N 75 C "HO3'" H N N 76 C "H2'" H N N 77 C "HO2'" H N N 78 C "H1'" H N N 79 C H41 H N N 80 C H42 H N N 81 C H5 H N N 82 C H6 H N N 83 CBV O3P O N N 84 CBV P P N N 85 CBV O1P O N N 86 CBV O2P O N N 87 CBV "O5'" O N N 88 CBV "C5'" C N N 89 CBV "C4'" C N R 90 CBV "O4'" O N N 91 CBV "C3'" C N S 92 CBV "O3'" O N N 93 CBV "C2'" C N R 94 CBV "O2'" O N N 95 CBV "C1'" C N R 96 CBV N1 N N N 97 CBV C2 C N N 98 CBV O2 O N N 99 CBV N3 N N N 100 CBV C4 C N N 101 CBV N4 N N N 102 CBV C5 C N N 103 CBV C6 C N N 104 CBV BR BR N N 105 CBV HO3P H N N 106 CBV HO1P H N N 107 CBV "H5'1" H N N 108 CBV "H5'2" H N N 109 CBV "H4'" H N N 110 CBV "H3'" H N N 111 CBV "HO3'" H N N 112 CBV "H2'" H N N 113 CBV "HO2'" H N N 114 CBV "H1'" H N N 115 CBV HN41 H N N 116 CBV HN42 H N N 117 CBV H6 H N N 118 G OP3 O N N 119 G P P N N 120 G OP1 O N N 121 G OP2 O N N 122 G "O5'" O N N 123 G "C5'" C N N 124 G "C4'" C N R 125 G "O4'" O N N 126 G "C3'" C N S 127 G "O3'" O N N 128 G "C2'" C N R 129 G "O2'" O N N 130 G "C1'" C N R 131 G N9 N Y N 132 G C8 C Y N 133 G N7 N Y N 134 G C5 C Y N 135 G C6 C N N 136 G O6 O N N 137 G N1 N N N 138 G C2 C N N 139 G N2 N N N 140 G N3 N N N 141 G C4 C Y N 142 G HOP3 H N N 143 G HOP2 H N N 144 G "H5'" H N N 145 G "H5''" H N N 146 G "H4'" H N N 147 G "H3'" H N N 148 G "HO3'" H N N 149 G "H2'" H N N 150 G "HO2'" H N N 151 G "H1'" H N N 152 G H8 H N N 153 G H1 H N N 154 G H21 H N N 155 G H22 H N N 156 HOH O O N N 157 HOH H1 H N N 158 HOH H2 H N N 159 MG MG MG N N 160 NA NA NA N N 161 U OP3 O N N 162 U P P N N 163 U OP1 O N N 164 U OP2 O N N 165 U "O5'" O N N 166 U "C5'" C N N 167 U "C4'" C N R 168 U "O4'" O N N 169 U "C3'" C N S 170 U "O3'" O N N 171 U "C2'" C N R 172 U "O2'" O N N 173 U "C1'" C N R 174 U N1 N N N 175 U C2 C N N 176 U O2 O N N 177 U N3 N N N 178 U C4 C N N 179 U O4 O N N 180 U C5 C N N 181 U C6 C N N 182 U HOP3 H N N 183 U HOP2 H N N 184 U "H5'" H N N 185 U "H5''" H N N 186 U "H4'" H N N 187 U "H3'" H N N 188 U "HO3'" H N N 189 U "H2'" H N N 190 U "HO2'" H N N 191 U "H1'" H N N 192 U H3 H N N 193 U H5 H N N 194 U H6 H N N 195 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 AGU C N1 doub N N 40 AGU C N2 sing N N 41 AGU C N3 sing N N 42 AGU N1 HN1 sing N N 43 AGU N2 HN21 sing N N 44 AGU N2 HN22 sing N N 45 AGU N3 N4 sing N N 46 AGU N3 HN3 sing N N 47 AGU N4 HN41 sing N N 48 AGU N4 HN42 sing N N 49 C OP3 P sing N N 50 C OP3 HOP3 sing N N 51 C P OP1 doub N N 52 C P OP2 sing N N 53 C P "O5'" sing N N 54 C OP2 HOP2 sing N N 55 C "O5'" "C5'" sing N N 56 C "C5'" "C4'" sing N N 57 C "C5'" "H5'" sing N N 58 C "C5'" "H5''" sing N N 59 C "C4'" "O4'" sing N N 60 C "C4'" "C3'" sing N N 61 C "C4'" "H4'" sing N N 62 C "O4'" "C1'" sing N N 63 C "C3'" "O3'" sing N N 64 C "C3'" "C2'" sing N N 65 C "C3'" "H3'" sing N N 66 C "O3'" "HO3'" sing N N 67 C "C2'" "O2'" sing N N 68 C "C2'" "C1'" sing N N 69 C "C2'" "H2'" sing N N 70 C "O2'" "HO2'" sing N N 71 C "C1'" N1 sing N N 72 C "C1'" "H1'" sing N N 73 C N1 C2 sing N N 74 C N1 C6 sing N N 75 C C2 O2 doub N N 76 C C2 N3 sing N N 77 C N3 C4 doub N N 78 C C4 N4 sing N N 79 C C4 C5 sing N N 80 C N4 H41 sing N N 81 C N4 H42 sing N N 82 C C5 C6 doub N N 83 C C5 H5 sing N N 84 C C6 H6 sing N N 85 CBV O3P P sing N N 86 CBV O3P HO3P sing N N 87 CBV P O1P sing N N 88 CBV P O2P doub N N 89 CBV P "O5'" sing N N 90 CBV O1P HO1P sing N N 91 CBV "O5'" "C5'" sing N N 92 CBV "C5'" "C4'" sing N N 93 CBV "C5'" "H5'1" sing N N 94 CBV "C5'" "H5'2" sing N N 95 CBV "C4'" "O4'" sing N N 96 CBV "C4'" "C3'" sing N N 97 CBV "C4'" "H4'" sing N N 98 CBV "O4'" "C1'" sing N N 99 CBV "C3'" "O3'" sing N N 100 CBV "C3'" "C2'" sing N N 101 CBV "C3'" "H3'" sing N N 102 CBV "O3'" "HO3'" sing N N 103 CBV "C2'" "O2'" sing N N 104 CBV "C2'" "C1'" sing N N 105 CBV "C2'" "H2'" sing N N 106 CBV "O2'" "HO2'" sing N N 107 CBV "C1'" N1 sing N N 108 CBV "C1'" "H1'" sing N N 109 CBV N1 C2 sing N N 110 CBV N1 C6 sing N N 111 CBV C2 O2 doub N N 112 CBV C2 N3 sing N N 113 CBV N3 C4 doub N N 114 CBV C4 N4 sing N N 115 CBV C4 C5 sing N N 116 CBV N4 HN41 sing N N 117 CBV N4 HN42 sing N N 118 CBV C5 C6 doub N N 119 CBV C5 BR sing N N 120 CBV C6 H6 sing N N 121 G OP3 P sing N N 122 G OP3 HOP3 sing N N 123 G P OP1 doub N N 124 G P OP2 sing N N 125 G P "O5'" sing N N 126 G OP2 HOP2 sing N N 127 G "O5'" "C5'" sing N N 128 G "C5'" "C4'" sing N N 129 G "C5'" "H5'" sing N N 130 G "C5'" "H5''" sing N N 131 G "C4'" "O4'" sing N N 132 G "C4'" "C3'" sing N N 133 G "C4'" "H4'" sing N N 134 G "O4'" "C1'" sing N N 135 G "C3'" "O3'" sing N N 136 G "C3'" "C2'" sing N N 137 G "C3'" "H3'" sing N N 138 G "O3'" "HO3'" sing N N 139 G "C2'" "O2'" sing N N 140 G "C2'" "C1'" sing N N 141 G "C2'" "H2'" sing N N 142 G "O2'" "HO2'" sing N N 143 G "C1'" N9 sing N N 144 G "C1'" "H1'" sing N N 145 G N9 C8 sing Y N 146 G N9 C4 sing Y N 147 G C8 N7 doub Y N 148 G C8 H8 sing N N 149 G N7 C5 sing Y N 150 G C5 C6 sing N N 151 G C5 C4 doub Y N 152 G C6 O6 doub N N 153 G C6 N1 sing N N 154 G N1 C2 sing N N 155 G N1 H1 sing N N 156 G C2 N2 sing N N 157 G C2 N3 doub N N 158 G N2 H21 sing N N 159 G N2 H22 sing N N 160 G N3 C4 sing N N 161 HOH O H1 sing N N 162 HOH O H2 sing N N 163 U OP3 P sing N N 164 U OP3 HOP3 sing N N 165 U P OP1 doub N N 166 U P OP2 sing N N 167 U P "O5'" sing N N 168 U OP2 HOP2 sing N N 169 U "O5'" "C5'" sing N N 170 U "C5'" "C4'" sing N N 171 U "C5'" "H5'" sing N N 172 U "C5'" "H5''" sing N N 173 U "C4'" "O4'" sing N N 174 U "C4'" "C3'" sing N N 175 U "C4'" "H4'" sing N N 176 U "O4'" "C1'" sing N N 177 U "C3'" "O3'" sing N N 178 U "C3'" "C2'" sing N N 179 U "C3'" "H3'" sing N N 180 U "O3'" "HO3'" sing N N 181 U "C2'" "O2'" sing N N 182 U "C2'" "C1'" sing N N 183 U "C2'" "H2'" sing N N 184 U "O2'" "HO2'" sing N N 185 U "C1'" N1 sing N N 186 U "C1'" "H1'" sing N N 187 U N1 C2 sing N N 188 U N1 C6 sing N N 189 U C2 O2 doub N N 190 U C2 N3 sing N N 191 U N3 C4 sing N N 192 U N3 H3 sing N N 193 U C4 O4 doub N N 194 U C4 C5 sing N N 195 U C5 C6 doub N N 196 U C5 H5 sing N N 197 U C6 H6 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5NY8 'double helix' 5NY8 'a-form double helix' 5NY8 'bulge loop' 5NY8 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 24 1_555 -0.403 -0.035 0.060 0.466 -7.101 -4.411 1 A_C1:G24_A A 1 ? A 24 ? 19 1 1 A C 2 1_555 A G 23 1_555 0.179 -0.104 0.178 -1.010 -16.251 -0.416 2 A_C2:G23_A A 2 ? A 23 ? 19 1 1 A G 3 1_555 A C 22 1_555 -0.018 -0.102 0.245 2.153 -2.438 -2.439 3 A_G3:C22_A A 3 ? A 22 ? 19 1 1 A G 4 1_555 A C 21 1_555 -0.233 -0.139 -0.148 0.558 -13.718 1.675 4 A_G4:C21_A A 4 ? A 21 ? 19 1 1 A G 29 1_555 A C 20 1_555 -0.093 -0.094 -0.163 -8.102 -4.111 -2.065 5 A_G29:C20_A A 29 ? A 20 ? 19 1 1 A A 5 1_555 A A 19 1_555 4.062 1.450 -0.803 -4.082 -25.363 -108.003 6 A_A5:A19_A A 5 ? A 19 ? 5 4 1 A A 35 1_555 A U 18 1_555 0.009 -0.157 0.523 17.282 -5.777 -1.340 7 A_A35:U18_A A 35 ? A 18 ? 20 1 1 A C 36 1_555 A G 17 1_555 0.056 -0.212 0.071 9.705 -16.739 -4.636 8 A_C36:G17_A A 36 ? A 17 ? 19 1 1 A G 37 1_555 A C 16 1_555 -0.282 -0.099 -0.072 -0.360 -7.182 2.318 9 A_G37:C16_A A 37 ? A 16 ? 19 1 1 A G 38 1_555 A C 15 1_555 -0.282 -0.177 -0.090 -0.722 -1.520 0.563 10 A_G38:C15_A A 38 ? A 15 ? 19 1 1 A CBV 39 1_555 A G 14 1_555 0.082 -0.172 -0.120 0.889 -5.703 -0.841 11 A_CBV39:G14_A A 39 ? A 14 ? 19 1 1 A G 40 1_555 A C 13 1_555 -0.181 -0.260 0.184 -2.238 -16.239 -0.249 12 A_G40:C13_A A 40 ? A 13 ? 19 1 1 A C 41 1_555 A G 12 1_555 0.323 -0.199 0.350 -4.912 -17.148 -0.996 13 A_C41:G12_A A 41 ? A 12 ? 19 1 1 B C 1 1_555 B G 24 1_555 1.059 0.088 -0.217 4.622 -9.991 -8.465 14 B_C1:G24_B B 1 ? B 24 ? 19 1 1 B C 2 1_555 B G 23 1_555 1.194 -0.467 0.071 6.430 -13.499 -3.235 15 B_C2:G23_B B 2 ? B 23 ? 19 1 1 B G 3 1_555 B C 22 1_555 0.306 -0.101 -0.140 0.148 -9.664 -4.029 16 B_G3:C22_B B 3 ? B 22 ? 19 1 1 B G 4 1_555 B C 21 1_555 0.148 0.034 0.127 0.784 -10.577 4.385 17 B_G4:C21_B B 4 ? B 21 ? 19 1 1 B G 29 1_555 B C 20 1_555 -0.311 -0.154 -0.131 -11.769 -6.058 3.572 18 B_G29:C20_B B 29 ? B 20 ? 19 1 1 B A 5 1_555 B A 19 1_555 4.244 1.451 -0.725 -8.825 -19.653 -105.826 19 B_A5:A19_B B 5 ? B 19 ? 5 4 1 B A 35 1_555 B U 18 1_555 0.042 0.043 0.103 9.225 -3.395 -4.255 20 B_A35:U18_B B 35 ? B 18 ? 20 1 1 B G 12 1_555 B C 41 1_555 -0.388 -0.293 0.497 7.715 -13.516 -0.295 21 B_G12:C41_B B 12 ? B 41 ? 19 1 1 B C 13 1_555 B G 40 1_555 -0.102 -0.233 0.122 6.857 -14.059 0.289 22 B_C13:G40_B B 13 ? B 40 ? 19 1 1 B G 14 1_555 B CBV 39 1_555 0.110 -0.047 -0.139 -0.734 -5.874 1.342 23 B_G14:CBV39_B B 14 ? B 39 ? 19 1 1 B C 15 1_555 B G 38 1_555 0.403 -0.314 -0.052 1.748 -5.927 -0.704 24 B_C15:G38_B B 15 ? B 38 ? 19 1 1 B C 16 1_555 B G 37 1_555 0.058 -0.324 -0.342 1.722 -9.046 -0.434 25 B_C16:G37_B B 16 ? B 37 ? 19 1 1 B G 17 1_555 B C 36 1_555 0.363 -0.115 0.274 -5.131 -9.809 -1.292 26 B_G17:C36_B B 17 ? B 36 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 24 1_555 A C 2 1_555 A G 23 1_555 0.806 -1.625 3.206 -0.442 4.060 38.799 -2.902 -1.258 3.019 6.092 0.662 39.005 1 AA_C1C2:G23G24_AA A 1 ? A 24 ? A 2 ? A 23 ? 1 A C 2 1_555 A G 23 1_555 A G 3 1_555 A C 22 1_555 -0.578 -2.109 3.026 0.053 6.867 27.911 -5.561 1.175 2.447 13.971 -0.109 28.727 2 AA_C2G3:C22G23_AA A 2 ? A 23 ? A 3 ? A 22 ? 1 A G 3 1_555 A C 22 1_555 A G 4 1_555 A C 21 1_555 0.590 -1.904 3.375 3.195 8.467 24.155 -6.515 -0.475 2.623 19.385 -7.315 25.771 3 AA_G3G4:C21C22_AA A 3 ? A 22 ? A 4 ? A 21 ? 1 A G 4 1_555 A C 21 1_555 A G 29 1_555 A C 20 1_555 -1.319 -1.368 3.318 -4.934 7.239 42.278 -2.576 1.307 3.180 9.909 6.754 43.135 4 AA_G4G29:C20C21_AA A 4 ? A 21 ? A 29 ? A 20 ? 1 A G 29 1_555 A C 20 1_555 A A 5 1_555 A A 19 1_555 -3.006 -2.139 3.651 0.478 11.498 26.579 -6.776 6.123 2.477 23.649 -0.983 28.922 5 AA_G29A5:A19C20_AA A 29 ? A 20 ? A 5 ? A 19 ? 1 A A 5 1_555 A A 19 1_555 A A 35 1_555 A U 18 1_555 -1.323 -1.059 3.214 7.961 1.757 78.527 -0.880 1.251 3.070 1.384 -6.273 78.881 6 AA_A5A35:U18A19_AA A 5 ? A 19 ? A 35 ? A 18 ? 1 A A 35 1_555 A U 18 1_555 A C 36 1_555 A G 17 1_555 -0.470 -1.254 3.544 -2.375 -5.413 33.940 -1.177 0.381 3.717 -9.187 4.030 34.436 7 AA_A35C36:G17U18_AA A 35 ? A 18 ? A 36 ? A 17 ? 1 A C 36 1_555 A G 17 1_555 A G 37 1_555 A C 16 1_555 0.801 -1.875 3.650 -2.317 3.293 30.842 -4.177 -1.971 3.368 6.158 4.333 31.098 8 AA_C36G37:C16G17_AA A 36 ? A 17 ? A 37 ? A 16 ? 1 A G 37 1_555 A C 16 1_555 A G 38 1_555 A C 15 1_555 -0.723 -2.293 3.195 -3.729 4.011 27.546 -5.616 0.662 2.908 8.320 7.734 28.075 9 AA_G37G38:C15C16_AA A 37 ? A 16 ? A 38 ? A 15 ? 1 A G 38 1_555 A C 15 1_555 A CBV 39 1_555 A G 14 1_555 -0.048 -2.288 3.343 -0.357 0.263 31.225 -4.302 0.020 3.324 0.488 0.663 31.228 10 AA_G38CBV39:G14C15_AA A 38 ? A 15 ? A 39 ? A 14 ? 1 A CBV 39 1_555 A G 14 1_555 A G 40 1_555 A C 13 1_555 -1.013 -2.017 3.250 -3.005 9.731 26.234 -6.220 1.448 2.457 20.484 6.325 28.109 11 AA_CBV39G40:C13G14_AA A 39 ? A 14 ? A 40 ? A 13 ? 1 A G 40 1_555 A C 13 1_555 A C 41 1_555 A G 12 1_555 0.173 -1.366 3.337 0.054 5.463 35.206 -3.020 -0.275 3.098 8.965 -0.089 35.614 12 AA_G40C41:G12C13_AA A 40 ? A 13 ? A 41 ? A 12 ? 1 B C 1 1_555 B G 24 1_555 B C 2 1_555 B G 23 1_555 0.919 -1.554 3.140 0.979 5.174 39.356 -2.852 -1.247 2.942 7.640 -1.446 39.693 13 BB_C1C2:G23G24_BB B 1 ? B 24 ? B 2 ? B 23 ? 1 B C 2 1_555 B G 23 1_555 B G 3 1_555 B C 22 1_555 -0.764 -2.060 3.293 2.798 11.116 25.381 -6.601 2.173 2.125 23.812 -5.993 27.810 14 BB_C2G3:C22G23_BB B 2 ? B 23 ? B 3 ? B 22 ? 1 B G 3 1_555 B C 22 1_555 B G 4 1_555 B C 21 1_555 0.957 -1.524 3.235 -0.365 10.339 29.701 -4.583 -1.829 2.562 19.441 0.687 31.413 15 BB_G3G4:C21C22_BB B 3 ? B 22 ? B 4 ? B 21 ? 1 B G 4 1_555 B C 21 1_555 B G 29 1_555 B C 20 1_555 -1.331 -1.253 3.242 -2.128 9.484 41.286 -2.663 1.633 2.959 13.230 2.968 42.366 16 BB_G4G29:C20C21_BB B 4 ? B 21 ? B 29 ? B 20 ? 1 B G 29 1_555 B C 20 1_555 B A 5 1_555 B A 19 1_555 -2.923 -2.124 3.425 1.675 7.892 28.485 -5.725 6.057 2.583 15.647 -3.320 29.582 17 BB_G29A5:A19C20_BB B 29 ? B 20 ? B 5 ? B 19 ? 1 B A 5 1_555 B A 19 1_555 B A 35 1_555 B U 18 1_555 -1.446 -1.178 3.416 12.327 1.422 78.053 -0.967 1.480 3.178 1.123 -9.731 78.878 18 BB_A5A35:U18A19_BB B 5 ? B 19 ? B 35 ? B 18 ? 1 B G 12 1_555 B C 41 1_555 B C 13 1_555 B G 40 1_555 -0.369 -1.650 3.241 0.064 5.749 33.418 -3.707 0.643 2.924 9.906 -0.111 33.895 19 BB_G12C13:G40C41_BB B 12 ? B 41 ? B 13 ? B 40 ? 1 B C 13 1_555 B G 40 1_555 B G 14 1_555 B CBV 39 1_555 0.844 -2.071 3.416 1.601 7.243 30.299 -5.205 -1.272 2.895 13.602 -3.007 31.173 20 BB_C13G14:CBV39G40_BB B 13 ? B 40 ? B 14 ? B 39 ? 1 B G 14 1_555 B CBV 39 1_555 B C 15 1_555 B G 38 1_555 -0.095 -2.257 3.260 -0.373 0.750 29.480 -4.591 0.109 3.204 1.473 0.733 29.491 21 BB_G14C15:G38CBV39_BB B 14 ? B 39 ? B 15 ? B 38 ? 1 B C 15 1_555 B G 38 1_555 B C 16 1_555 B G 37 1_555 0.156 -2.071 3.353 2.497 1.685 28.315 -4.599 0.260 3.228 3.431 -5.086 28.471 22 BB_C15C16:G37G38_BB B 15 ? B 38 ? B 16 ? B 37 ? 1 B C 16 1_555 B G 37 1_555 B G 17 1_555 B C 36 1_555 -0.532 -1.804 3.549 -2.409 3.696 33.486 -3.742 0.502 3.366 6.380 4.159 33.767 23 BB_C16G17:C36G37_BB B 16 ? B 37 ? B 17 ? B 36 ? # _pdbx_audit_support.funding_organization 'Cancer Research UK' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 'program grant A18604' _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5NY8 _atom_sites.fract_transf_matrix[1][1] 0.011992 _atom_sites.fract_transf_matrix[1][2] 0.006923 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013847 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015076 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C H MG N NA O P # loop_