HEADER HYDROLASE 11-MAY-17 5NYF TITLE SELENOMETHIONINE LABELLED ANBU (GLY-1) MUTANT FROM HYPHOMICROBIUM SP. TITLE 2 STRAIN MC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANBU; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPHOMICROBIUM SP. (STRAIN MC1); SOURCE 3 ORGANISM_TAXID: 717785; SOURCE 4 GENE: HYPMC_4374; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NTN-HYDROLASE-FOLD, PROTEASOME, EVOLUTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.-T.VIELBERG,M.GROLL REVDAT 3 07-MAR-18 5NYF 1 JRNL REVDAT 2 28-FEB-18 5NYF 1 JRNL REVDAT 1 24-MAY-17 5NYF 0 JRNL AUTH M.T.VIELBERG,V.C.BAUER,M.GROLL JRNL TITL ON THE TRAILS OF THE PROTEASOME FOLD: STRUCTURAL AND JRNL TITL 2 FUNCTIONAL ANALYSIS OF THE ANCESTRAL BETA-SUBUNIT PROTEIN JRNL TITL 3 ANBU. JRNL REF J. MOL. BIOL. V. 430 628 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29355501 JRNL DOI 10.1016/J.JMB.2018.01.004 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 598 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 817 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1664 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1706 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1581 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2302 ; 1.118 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3637 ; 0.833 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 5.510 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;32.885 ;23.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 279 ;13.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.174 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1890 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 384 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 824 ; 2.582 ; 4.818 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 823 ; 2.583 ; 4.815 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ; 3.179 ; 7.186 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1024 ; 3.177 ; 7.189 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 881 ; 3.033 ; 5.478 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 870 ; 2.894 ; 5.467 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1261 ; 3.472 ; 7.987 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1771 ; 4.127 ;55.916 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1766 ; 4.081 ;55.795 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3285 ; 1.282 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 31 ;33.248 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3273 ; 9.257 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2994 14.0597 10.3649 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0465 REMARK 3 T33: 0.0142 T12: 0.0305 REMARK 3 T13: 0.0119 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.7865 L22: 0.2793 REMARK 3 L33: 0.3338 L12: -0.6058 REMARK 3 L13: -0.2621 L23: 0.2193 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: -0.1429 S13: 0.0443 REMARK 3 S21: -0.0362 S22: 0.0162 S23: -0.0413 REMARK 3 S31: -0.0806 S32: -0.0661 S33: -0.0452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23158 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SODIUM PHOSPHATE, 0.8 M REMARK 280 POTASSIUM PHOSPHATE, 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 88.06500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.84435 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 13.24667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 88.06500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.84435 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 13.24667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 88.06500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.84435 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 13.24667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 88.06500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 50.84435 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 13.24667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 88.06500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 50.84435 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 13.24667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 88.06500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 50.84435 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.24667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 101.68870 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 26.49333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 101.68870 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 26.49333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 101.68870 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 26.49333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 101.68870 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 26.49333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 101.68870 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 26.49333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 101.68870 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 26.49333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 88.06500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 50.84435 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 13.24667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 THR A 18 REMARK 465 ARG A 19 REMARK 465 THR A 20 REMARK 465 ASN A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 VAL A 24 REMARK 465 ASP A 25 REMARK 465 ASN A 26 REMARK 465 ILE A 27 REMARK 465 ALA A 28 REMARK 465 GLN A 29 REMARK 465 TYR A 30 REMARK 465 ASP A 101 REMARK 465 GLY A 102 REMARK 465 ALA A 103 REMARK 465 ALA A 104 REMARK 465 LEU A 105 REMARK 465 GLU A 106 REMARK 465 ALA A 107 REMARK 465 SER A 108 REMARK 465 LYS A 109 REMARK 465 LEU A 110 REMARK 465 GLY A 111 REMARK 465 PHE A 112 REMARK 465 ASN A 113 REMARK 465 SER A 183 REMARK 465 THR A 184 REMARK 465 LEU A 185 REMARK 465 ARG A 186 REMARK 465 SER A 187 REMARK 465 ASN A 188 REMARK 465 LEU A 189 REMARK 465 SER A 190 REMARK 465 VAL A 191 REMARK 465 GLY A 192 REMARK 465 MSE A 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 417 O HOH A 417 5555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 41 -50.65 -126.20 REMARK 500 SER A 99 49.25 -93.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 404 O REMARK 620 2 HOH A 404 O 167.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 DBREF 5NYF A 1 243 UNP F8JB59 F8JB59_HYPSM 2 244 SEQADV 5NYF MSE A -1 UNP F8JB59 INITIATING METHIONINE SEQADV 5NYF GLY A 0 UNP F8JB59 EXPRESSION TAG SEQRES 1 A 245 MSE GLY THR TYR ALA VAL ALA PHE ARG LEU GLU ARG GLY SEQRES 2 A 245 LEU VAL PHE ALA ALA ASP THR ARG THR ASN ALA GLY VAL SEQRES 3 A 245 ASP ASN ILE ALA GLN TYR LYS LYS LEU GLN LEU TRP ARG SEQRES 4 A 245 GLN PRO GLY GLU ARG VAL PHE VAL LEU LEU SER ALA GLY SEQRES 5 A 245 ASN LEU ALA ALA THR GLN ALA VAL VAL SER LEU ILE ASN SEQRES 6 A 245 GLU HIS LEU SER GLN GLU THR ASP ASP GLU VAL THR THR SEQRES 7 A 245 LEU PHE THR ALA PRO ASN MSE TYR ARG ALA ALA ARG VAL SEQRES 8 A 245 VAL GLY ASP ALA VAL ARG GLU ALA ARG SER ILE ASP GLY SEQRES 9 A 245 ALA ALA LEU GLU ALA SER LYS LEU GLY PHE ASN THR ASN SEQRES 10 A 245 PHE ILE PHE GLY GLY GLN ILE LYS GLY GLU ARG PRO ARG SEQRES 11 A 245 LEU PHE GLN ILE TYR PRO GLU GLY ASN PHE ILE GLU ALA SEQRES 12 A 245 THR ASP ASP THR PRO PHE PHE GLN ILE GLY GLU HIS LYS SEQRES 13 A 245 TYR GLY LYS PRO ILE LEU ASP ARG VAL ALA ARG SER ASP SEQRES 14 A 245 MSE ARG LEU GLY GLU ALA ALA LYS LEU MSE LEU LEU SER SEQRES 15 A 245 PHE ASP SER THR LEU ARG SER ASN LEU SER VAL GLY MSE SEQRES 16 A 245 PRO ILE ASP LEU VAL ILE TYR GLU ARG ASP THR PHE ASP SEQRES 17 A 245 VAL THR ARG GLU LYS ARG ILE SER ALA ASP ASP GLU TYR SEQRES 18 A 245 PHE ARG ASN LEU SER ASN ALA TRP SER ASP ALA LEU ARG SEQRES 19 A 245 GLN ALA PHE SER LYS ILE GLU GLU PHE ASP VAL MODRES 5NYF MSE A 83 MET MODIFIED RESIDUE MODRES 5NYF MSE A 168 MET MODIFIED RESIDUE MODRES 5NYF MSE A 177 MET MODIFIED RESIDUE HET MSE A 83 8 HET MSE A 168 8 HET MSE A 177 8 HET NA A 301 1 HET PO4 A 302 5 HET PO4 A 303 5 HET PO4 A 304 5 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *43(H2 O) HELIX 1 AA1 ASN A 51 GLU A 69 1 19 HELIX 2 AA2 ASN A 82 ARG A 98 1 17 HELIX 3 AA3 GLY A 156 ALA A 164 1 9 HELIX 4 AA4 ARG A 169 PHE A 181 1 13 HELIX 5 AA5 ASP A 217 GLU A 239 1 23 SHEET 1 AA1 5 PHE A 147 GLY A 151 0 SHEET 2 AA1 5 TYR A 2 LEU A 8 -1 N ALA A 3 O ILE A 150 SHEET 3 AA1 5 GLY A 11 ALA A 16 -1 O ALA A 15 N VAL A 4 SHEET 4 AA1 5 ILE A 195 GLU A 201 -1 O TYR A 200 N LEU A 12 SHEET 5 AA1 5 GLU A 210 ILE A 213 -1 O LYS A 211 N LEU A 197 SHEET 1 AA2 5 LEU A 33 GLN A 38 0 SHEET 2 AA2 5 ARG A 42 SER A 48 -1 O LEU A 46 N GLN A 34 SHEET 3 AA2 5 PHE A 116 ILE A 122 -1 O ILE A 117 N LEU A 47 SHEET 4 AA2 5 ARG A 128 ILE A 132 -1 O PHE A 130 N PHE A 118 SHEET 5 AA2 5 PHE A 138 GLU A 140 -1 O ILE A 139 N GLN A 131 LINK C ASN A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N TYR A 84 1555 1555 1.33 LINK C ASP A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N ARG A 169 1555 1555 1.33 LINK C LEU A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N LEU A 178 1555 1555 1.33 LINK NA NA A 301 O HOH A 404 1555 1555 2.06 LINK NA NA A 301 O HOH A 404 1555 5555 2.06 SITE 1 AC1 3 ASP A 167 HOH A 404 HOH A 443 SITE 1 AC2 6 THR A 114 ASN A 115 GLN A 149 ILE A 150 SITE 2 AC2 6 GLY A 151 LYS A 154 SITE 1 AC3 7 ARG A 169 LEU A 170 GLY A 171 ARG A 209 SITE 2 AC3 7 LYS A 211 HOH A 401 HOH A 410 SITE 1 AC4 6 ARG A 7 ARG A 126 ARG A 202 HOH A 403 SITE 2 AC4 6 HOH A 417 HOH A 438 CRYST1 176.130 176.130 39.740 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005678 0.003278 0.000000 0.00000 SCALE2 0.000000 0.006556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025164 0.00000