data_5NZ3 # _entry.id 5NZ3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5NZ3 pdb_00005nz3 10.2210/pdb5nz3/pdb WWPDB D_1200004945 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-18 2 'Structure model' 1 1 2017-11-29 3 'Structure model' 1 2 2019-10-16 4 'Structure model' 1 3 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' reflns 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_reflns.pdbx_CC_half' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_struct_conn.conn_type_id' 8 4 'Structure model' '_struct_conn.id' 9 4 'Structure model' '_struct_conn.pdbx_dist_value' 10 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NZ3 _pdbx_database_status.recvd_initial_deposition_date 2017-05-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, L.' 1 ? 'Wang, J.' 2 ? 'Lilley, D.M.J.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2451-9456 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first 1407 _citation.page_last 1415.e2 _citation.title 'Structure of the Guanidine III Riboswitch.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2017.08.021 _citation.pdbx_database_id_PubMed 28988949 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Wang, J.' 2 ? primary 'Wilson, T.J.' 3 ? primary 'Lilley, D.M.J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (41-MER)' 13460.812 2 ? ? ? ? 2 non-polymer syn 1-METHYLGUANIDINE 73.097 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 5 water nat water 18.015 22 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'C(CBV)GGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGG(CBV)GC' _entity_poly.pdbx_seq_one_letter_code_can CCGGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGGCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1-METHYLGUANIDINE MGX 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 CBV n 1 3 G n 1 4 G n 1 5 A n 1 6 C n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 G n 1 15 C n 1 16 C n 1 17 G n 1 18 U n 1 19 A n 1 20 C n 1 21 C n 1 22 C n 1 23 G n 1 24 G n 1 25 U n 1 26 C n 1 27 A n 1 28 G n 1 29 G n 1 30 A n 1 31 C n 1 32 A n 1 33 A n 1 34 G n 1 35 A n 1 36 C n 1 37 G n 1 38 G n 1 39 CBV n 1 40 G n 1 41 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 41 _pdbx_entity_src_syn.organism_scientific 'Thermobifida fusca' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 2021 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MGX non-polymer . 1-METHYLGUANIDINE ? 'C2 H7 N3' 73.097 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 CBV 2 2 2 CBV CBV A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 A 19 19 19 A A A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 C 26 26 26 C C A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 C 31 31 31 C C A . n A 1 32 A 32 32 32 A A A . n A 1 33 A 33 33 33 A A A . n A 1 34 G 34 34 34 G G A . n A 1 35 A 35 35 35 A A A . n A 1 36 C 36 36 36 C C A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 CBV 39 39 39 CBV CBV A . n A 1 40 G 40 40 40 G G A . n A 1 41 C 41 41 41 C C A . n B 1 1 C 1 1 1 C C B . n B 1 2 CBV 2 2 2 CBV CBV B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n B 1 15 C 15 15 15 C C B . n B 1 16 C 16 16 16 C C B . n B 1 17 G 17 17 17 G G B . n B 1 18 U 18 18 18 U U B . n B 1 19 A 19 19 19 A A B . n B 1 20 C 20 20 20 C C B . n B 1 21 C 21 21 21 C C B . n B 1 22 C 22 22 22 C C B . n B 1 23 G 23 23 23 G G B . n B 1 24 G 24 24 24 G G B . n B 1 25 U 25 25 25 U U B . n B 1 26 C 26 26 26 C C B . n B 1 27 A 27 27 27 A A B . n B 1 28 G 28 28 28 G G B . n B 1 29 G 29 29 29 G G B . n B 1 30 A 30 30 30 A A B . n B 1 31 C 31 31 31 C C B . n B 1 32 A 32 32 32 A A B . n B 1 33 A 33 33 33 A A B . n B 1 34 G 34 34 34 G G B . n B 1 35 A 35 35 35 A A B . n B 1 36 C 36 36 36 C C B . n B 1 37 G 37 37 37 G G B . n B 1 38 G 38 38 38 G G B . n B 1 39 CBV 39 39 39 CBV CBV B . n B 1 40 G 40 40 40 G G B . n B 1 41 C 41 41 41 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MGX 1 101 1 MGX MGX A . D 3 MG 1 102 1 MG MG A . E 3 MG 1 103 3 MG MG A . F 3 MG 1 104 5 MG MG A . G 4 NA 1 105 1 NA NA A . H 4 NA 1 106 3 NA NA A . I 4 NA 1 107 4 NA NA A . J 3 MG 1 101 2 MG MG B . K 3 MG 1 102 4 MG MG B . L 4 NA 1 103 5 NA NA B . M 5 HOH 1 201 6 HOH HOH A . M 5 HOH 2 202 8 HOH HOH A . M 5 HOH 3 203 13 HOH HOH A . M 5 HOH 4 204 21 HOH HOH A . M 5 HOH 5 205 22 HOH HOH A . M 5 HOH 6 206 20 HOH HOH A . M 5 HOH 7 207 19 HOH HOH A . M 5 HOH 8 208 15 HOH HOH A . M 5 HOH 9 209 12 HOH HOH A . M 5 HOH 10 210 16 HOH HOH A . M 5 HOH 11 211 7 HOH HOH A . M 5 HOH 12 212 14 HOH HOH A . M 5 HOH 13 213 2 HOH HOH A . M 5 HOH 14 214 17 HOH HOH A . M 5 HOH 15 215 1 HOH HOH A . M 5 HOH 16 216 5 HOH HOH A . M 5 HOH 17 217 18 HOH HOH A . M 5 HOH 18 218 9 HOH HOH A . M 5 HOH 19 219 10 HOH HOH A . N 5 HOH 1 201 4 HOH HOH B . N 5 HOH 2 202 11 HOH HOH B . N 5 HOH 3 203 3 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev_2219: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5NZ3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 83.491 _cell.length_a_esd ? _cell.length_b 83.491 _cell.length_b_esd ? _cell.length_c 66.071 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NZ3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Magnesium acetate, 0.05 M MES pH 5.6, 20% v/v 2-Methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-04-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92019 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.92019 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5NZ3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.059 _reflns.d_resolution_low 48.775 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 31161 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.2 _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 15.07 _reflns.pdbx_Rmerge_I_obs 0.1061 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.15 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.028 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.06 _reflns_shell.d_res_low 2.09 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 788 _reflns_shell.percent_possible_all 95.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.233 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 14.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.603 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.723 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5NZ3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.059 _refine.ls_d_res_low 48.775 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 31161 _refine.ls_number_reflns_R_free 1572 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.68 _refine.ls_percent_reflns_R_free 5.04 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2210 _refine.ls_R_factor_R_free 0.2737 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2185 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 35.90 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.35 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1770 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 1806 _refine_hist.d_res_high 2.059 _refine_hist.d_res_low 48.775 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 1984 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.439 ? 3100 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.956 ? 944 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.062 ? 404 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 ? 83 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0593 2.1258 . . 141 2650 96.00 . . . 0.4052 . 0.3932 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1258 2.2018 . . 165 2661 98.00 . . . 0.3852 . 0.3738 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2018 2.2899 . . 148 2620 97.00 . . . 0.4353 . 0.3762 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2899 2.3942 . . 131 2706 97.00 . . . 0.4179 . 0.3351 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3942 2.5204 . . 175 2619 97.00 . . . 0.3778 . 0.3319 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5204 2.6783 . . 151 2656 97.00 . . . 0.3350 . 0.3304 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6783 2.8850 . . 134 2749 98.00 . . . 0.3781 . 0.2992 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8850 3.1753 . . 133 2632 98.00 . . . 0.2762 . 0.2172 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1753 3.6347 . . 112 2795 99.00 . . . 0.2279 . 0.1587 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6347 4.5788 . . 121 2746 100.00 . . . 0.2039 . 0.1731 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.5788 48.7884 . . 161 2755 100.00 . . . 0.2225 . 0.1712 . . . . . . . . . . # _struct.entry_id 5NZ3 _struct.title 'The structure of the thermobifida fusca guanidine III riboswitch with methylguanidine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NZ3 _struct_keywords.text 'guanidine III riboswitch, stem-loop, pseudoknot, RNA, gene regulation' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 5 ? N N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5NZ3 _struct_ref.pdbx_db_accession 5NZ3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5NZ3 A 1 ? 41 ? 5NZ3 1 ? 41 ? 1 41 2 1 5NZ3 B 1 ? 41 ? 5NZ3 1 ? 41 ? 1 41 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,M 2 1 B,J,K,L,N # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 1 "O3'" ? ? ? 1_555 A CBV 2 P ? ? A C 1 A CBV 2 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale2 covale one ? A CBV 2 "O3'" ? ? ? 1_555 A G 3 P ? ? A CBV 2 A G 3 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale3 covale both ? A G 38 "O3'" ? ? ? 1_555 A CBV 39 P ? ? A G 38 A CBV 39 1_555 ? ? ? ? ? ? ? 1.634 ? ? covale4 covale one ? A CBV 39 "O3'" ? ? ? 1_555 A G 40 P ? ? A CBV 39 A G 40 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale5 covale both ? B C 1 "O3'" ? ? ? 1_555 B CBV 2 P ? ? B C 1 B CBV 2 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale6 covale one ? B CBV 2 "O3'" ? ? ? 1_555 B G 3 P ? ? B CBV 2 B G 3 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale7 covale both ? B G 38 "O3'" ? ? ? 1_555 B CBV 39 P ? ? B G 38 B CBV 39 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale8 covale one ? B CBV 39 "O3'" ? ? ? 1_555 B G 40 P ? ? B CBV 39 B G 40 1_555 ? ? ? ? ? ? ? 1.594 ? ? metalc1 metalc ? ? A A 8 OP1 ? ? ? 1_555 I NA . NA ? ? A A 8 A NA 107 1_555 ? ? ? ? ? ? ? 2.918 ? ? metalc2 metalc ? ? A G 29 "O3'" ? ? ? 1_555 G NA . NA ? ? A G 29 A NA 105 1_555 ? ? ? ? ? ? ? 2.892 ? ? metalc3 metalc ? ? A G 29 "O2'" ? ? ? 1_555 G NA . NA ? ? A G 29 A NA 105 1_555 ? ? ? ? ? ? ? 2.465 ? ? metalc4 metalc ? ? A A 30 OP2 ? ? ? 1_555 D MG . MG ? ? A A 30 A MG 102 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc5 metalc ? ? A A 30 OP2 ? ? ? 1_555 G NA . NA ? ? A A 30 A NA 105 1_555 ? ? ? ? ? ? ? 2.677 ? ? metalc6 metalc ? ? A C 31 OP2 ? ? ? 1_555 D MG . MG ? ? A C 31 A MG 102 1_555 ? ? ? ? ? ? ? 1.886 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 102 A HOH 205 1_555 ? ? ? ? ? ? ? 1.953 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 102 A HOH 207 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 A HOH 206 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc10 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 104 A HOH 209 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc11 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 104 A HOH 213 1_555 ? ? ? ? ? ? ? 1.848 ? ? metalc12 metalc ? ? B G 23 O6 ? ? ? 1_555 L NA . NA ? ? B G 23 B NA 103 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc13 metalc ? ? B G 40 O6 ? ? ? 1_555 J MG . MG ? ? B G 40 B MG 101 1_555 ? ? ? ? ? ? ? 2.873 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A CBV 2 N3 ? ? ? 1_555 A G 23 N1 ? ? A CBV 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A CBV 2 N4 ? ? ? 1_555 A G 23 O6 ? ? A CBV 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A CBV 2 O2 ? ? ? 1_555 A G 23 N2 ? ? A CBV 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 A A 19 N6 ? ? A A 5 A A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 A A 19 N7 ? ? A A 5 A A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A U 18 O4 ? ? A C 6 A U 18 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog16 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 34 N2 ? ? A C 6 A G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog17 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 34 N1 ? ? A C 6 A G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog18 hydrog ? ? A G 7 N1 ? ? ? 1_555 A A 35 N7 ? ? A G 7 A A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 A A 35 N6 ? ? A G 7 A A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog20 hydrog ? ? A A 8 N1 ? ? ? 1_555 A C 36 N4 ? ? A A 8 A C 36 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog21 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 9 A C 16 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 37 O6 ? ? A G 9 A G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 37 N7 ? ? A G 9 A G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 38 O6 ? ? A G 10 A G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 38 N7 ? ? A G 10 A G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A G 14 O6 ? ? A U 11 A G 14 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog28 hydrog ? ? A U 11 O4 ? ? ? 1_555 A CBV 39 N4 ? ? A U 11 A CBV 39 1_555 ? ? ? ? ? ? 'U-CBV MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 14 N1 ? ? ? 1_555 A CBV 39 N3 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 14 N2 ? ? ? 1_555 A CBV 39 O2 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 14 O6 ? ? ? 1_555 A CBV 39 N4 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 18 O4 ? ? ? 1_555 A G 34 N2 ? ? A U 18 A G 34 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog48 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 18 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 18 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 19 N6 ? ? ? 1_555 A G 34 N3 ? ? A A 19 A G 34 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog51 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 27 N3 ? ? A G 23 A A 27 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog55 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 32 N1 ? ? A G 29 A A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog56 hydrog ? ? A G 29 N3 ? ? ? 1_555 A A 32 N6 ? ? A G 29 A A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog57 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B CBV 2 N3 ? ? ? 1_555 B G 23 N1 ? ? B CBV 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B CBV 2 N4 ? ? ? 1_555 B G 23 O6 ? ? B CBV 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B CBV 2 O2 ? ? ? 1_555 B G 23 N2 ? ? B CBV 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 22 N3 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 22 O2 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 22 N4 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B A 5 N1 ? ? ? 1_555 B A 19 N6 ? ? B A 5 B A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog70 hydrog ? ? B A 5 N6 ? ? ? 1_555 B A 19 N7 ? ? B A 5 B A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog71 hydrog ? ? B C 6 N4 ? ? ? 1_555 B U 18 O4 ? ? B C 6 B U 18 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog72 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 34 N2 ? ? B C 6 B G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog73 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 34 N1 ? ? B C 6 B G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog74 hydrog ? ? B G 7 N1 ? ? ? 1_555 B A 35 N7 ? ? B G 7 B A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog75 hydrog ? ? B G 7 O6 ? ? ? 1_555 B A 35 N6 ? ? B G 7 B A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog76 hydrog ? ? B A 8 N1 ? ? ? 1_555 B C 36 N4 ? ? B A 8 B C 36 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog77 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 9 B C 16 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog78 hydrog ? ? B G 9 N1 ? ? ? 1_555 B G 37 O6 ? ? B G 9 B G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog79 hydrog ? ? B G 9 N2 ? ? ? 1_555 B G 37 N7 ? ? B G 9 B G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog80 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 10 B C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog81 hydrog ? ? B G 10 N1 ? ? ? 1_555 B G 38 O6 ? ? B G 10 B G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog82 hydrog ? ? B G 10 N2 ? ? ? 1_555 B G 38 N7 ? ? B G 10 B G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog83 hydrog ? ? B U 11 N3 ? ? ? 1_555 B G 14 O6 ? ? B U 11 B G 14 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog84 hydrog ? ? B U 11 O4 ? ? ? 1_555 B CBV 39 N4 ? ? B U 11 B CBV 39 1_555 ? ? ? ? ? ? 'U-CBV MISPAIR' ? ? ? hydrog85 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 40 N1 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 40 O6 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 40 N2 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 14 N1 ? ? ? 1_555 B CBV 39 N3 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 14 N2 ? ? ? 1_555 B CBV 39 O2 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 14 O6 ? ? ? 1_555 B CBV 39 N4 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 38 N1 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 38 O6 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 38 N2 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 37 N1 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 37 O6 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 37 N2 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 36 N3 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 36 O2 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 36 N4 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B U 18 N3 ? ? ? 1_555 B A 35 N1 ? ? B U 18 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B U 18 O4 ? ? ? 1_555 B A 35 N6 ? ? B U 18 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B A 19 N6 ? ? ? 1_555 B G 34 N3 ? ? B A 19 B G 34 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog106 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 29 N2 ? ? ? 1_555 B A 32 N1 ? ? B G 29 B A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog110 hydrog ? ? B G 29 N3 ? ? ? 1_555 B A 32 N6 ? ? B G 29 B A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O3'" ? A G 29 ? A G 29 ? 1_555 NA ? G NA . ? A NA 105 ? 1_555 "O2'" ? A G 29 ? A G 29 ? 1_555 61.2 ? 2 "O3'" ? A G 29 ? A G 29 ? 1_555 NA ? G NA . ? A NA 105 ? 1_555 OP2 ? A A 30 ? A A 30 ? 1_555 52.6 ? 3 "O2'" ? A G 29 ? A G 29 ? 1_555 NA ? G NA . ? A NA 105 ? 1_555 OP2 ? A A 30 ? A A 30 ? 1_555 98.0 ? 4 OP2 ? A A 30 ? A A 30 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 OP2 ? A C 31 ? A C 31 ? 1_555 100.1 ? 5 OP2 ? A A 30 ? A A 30 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? A HOH 205 ? 1_555 81.7 ? 6 OP2 ? A C 31 ? A C 31 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? A HOH 205 ? 1_555 107.1 ? 7 OP2 ? A A 30 ? A A 30 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? A HOH 207 ? 1_555 88.4 ? 8 OP2 ? A C 31 ? A C 31 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? A HOH 207 ? 1_555 86.0 ? 9 O ? M HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? A HOH 207 ? 1_555 164.7 ? 10 O ? M HOH . ? A HOH 209 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 92.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MGX 101 ? 5 'binding site for residue MGX A 101' AC2 Software A MG 102 ? 4 'binding site for residue MG A 102' AC3 Software A MG 103 ? 1 'binding site for residue MG A 103' AC4 Software A MG 104 ? 2 'binding site for residue MG A 104' AC5 Software A NA 105 ? 3 'binding site for residue NA A 105' AC6 Software A NA 107 ? 3 'binding site for residue NA A 107' AC7 Software B MG 101 ? 2 'binding site for residue MG B 101' AC8 Software B NA 103 ? 2 'binding site for residue NA B 103' AC9 Software B C 1 ? 7 'binding site for Di-nucleotide C B 1 and CBV B 2' AD1 Software B CBV 2 ? 7 'binding site for Di-nucleotide CBV B 2 and G B 3' AD2 Software B G 38 ? 8 'binding site for Di-nucleotide G B 38 and CBV B 39' AD3 Software B CBV 39 ? 8 'binding site for Di-nucleotide CBV B 39 and G B 40' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 C A 6 ? C A 6 . ? 1_555 ? 2 AC1 5 G A 7 ? G A 7 . ? 1_555 ? 3 AC1 5 A A 8 ? A A 8 . ? 1_555 ? 4 AC1 5 C A 16 ? C A 16 . ? 1_555 ? 5 AC1 5 G A 17 ? G A 17 . ? 1_555 ? 6 AC2 4 A A 30 ? A A 30 . ? 1_555 ? 7 AC2 4 C A 31 ? C A 31 . ? 1_555 ? 8 AC2 4 HOH M . ? HOH A 205 . ? 1_555 ? 9 AC2 4 HOH M . ? HOH A 207 . ? 1_555 ? 10 AC3 1 HOH M . ? HOH A 206 . ? 1_555 ? 11 AC4 2 HOH M . ? HOH A 209 . ? 1_555 ? 12 AC4 2 HOH M . ? HOH A 213 . ? 1_555 ? 13 AC5 3 G A 29 ? G A 29 . ? 1_555 ? 14 AC5 3 A A 30 ? A A 30 . ? 1_555 ? 15 AC5 3 A A 32 ? A A 32 . ? 1_555 ? 16 AC6 3 A A 8 ? A A 8 . ? 1_555 ? 17 AC6 3 C A 16 ? C A 16 . ? 3_454 ? 18 AC6 3 G A 38 ? G A 38 . ? 3_454 ? 19 AC7 2 CBV B 39 ? CBV B 39 . ? 1_555 ? 20 AC7 2 G B 40 ? G B 40 . ? 1_555 ? 21 AC8 2 G B 23 ? G B 23 . ? 1_555 ? 22 AC8 2 G B 24 ? G B 24 . ? 1_555 ? 23 AC9 7 C A 1 ? C A 1 . ? 5_564 ? 24 AC9 7 G A 24 ? G A 24 . ? 5_564 ? 25 AC9 7 U A 25 ? U A 25 . ? 5_564 ? 26 AC9 7 G B 3 ? G B 3 . ? 1_555 ? 27 AC9 7 G B 23 ? G B 23 . ? 1_555 ? 28 AC9 7 G B 24 ? G B 24 . ? 1_555 ? 29 AC9 7 A B 27 ? A B 27 . ? 1_555 ? 30 AD1 7 C B 1 ? C B 1 . ? 1_555 ? 31 AD1 7 G B 4 ? G B 4 . ? 1_555 ? 32 AD1 7 C B 22 ? C B 22 . ? 1_555 ? 33 AD1 7 G B 23 ? G B 23 . ? 1_555 ? 34 AD1 7 G B 24 ? G B 24 . ? 1_555 ? 35 AD1 7 A B 27 ? A B 27 . ? 1_555 ? 36 AD1 7 G B 28 ? G B 28 . ? 1_555 ? 37 AD2 8 G B 10 ? G B 10 . ? 1_555 ? 38 AD2 8 U B 11 ? U B 11 . ? 1_555 ? 39 AD2 8 G B 14 ? G B 14 . ? 1_555 ? 40 AD2 8 C B 15 ? C B 15 . ? 1_555 ? 41 AD2 8 C B 16 ? C B 16 . ? 1_555 ? 42 AD2 8 G B 37 ? G B 37 . ? 1_555 ? 43 AD2 8 G B 40 ? G B 40 . ? 1_555 ? 44 AD2 8 MG J . ? MG B 101 . ? 1_555 ? 45 AD3 8 U B 11 ? U B 11 . ? 1_555 ? 46 AD3 8 G B 12 ? G B 12 . ? 1_555 ? 47 AD3 8 C B 13 ? C B 13 . ? 1_555 ? 48 AD3 8 G B 14 ? G B 14 . ? 1_555 ? 49 AD3 8 C B 15 ? C B 15 . ? 1_555 ? 50 AD3 8 G B 38 ? G B 38 . ? 1_555 ? 51 AD3 8 C B 41 ? C B 41 . ? 1_555 ? 52 AD3 8 MG J . ? MG B 101 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" A C 1 ? ? O3P A CBV 2 ? ? 0.40 2 1 "O3'" A G 38 ? ? O3P A CBV 39 ? ? 0.40 3 1 "O3'" B G 38 ? ? O3P B CBV 39 ? ? 0.41 4 1 "O3'" B C 1 ? ? O3P B CBV 2 ? ? 0.45 5 1 "H5'" A C 26 ? ? C8 A A 27 ? ? 0.97 6 1 "H5'" A C 26 ? ? N7 A A 27 ? ? 1.07 7 1 "H5'" A C 26 ? ? H8 A A 27 ? ? 1.12 8 1 "HO3'" A CBV 2 ? ? P A G 3 ? ? 1.23 9 1 "C3'" A G 38 ? ? O3P A CBV 39 ? ? 1.80 10 1 O A HOH 218 ? ? O A HOH 219 ? ? 1.88 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 113.87 108.50 5.37 0.70 N 2 1 C6 A C 15 ? ? N1 A C 15 ? ? C2 A C 15 ? ? 123.24 120.30 2.94 0.40 N 3 1 "O4'" A G 28 ? ? "C1'" A G 28 ? ? N9 A G 28 ? ? 114.47 108.50 5.97 0.70 N 4 1 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 112.85 108.50 4.35 0.70 N # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -23.5266 27.0947 -6.8974 0.3050 0.6967 0.2971 0.0024 0.0515 0.0414 2.7067 5.5066 8.3844 3.8483 3.7357 5.4062 0.0078 -0.4181 -0.5067 0.4475 -0.2415 -0.0656 0.6634 0.5279 -0.0212 'X-RAY DIFFRACTION' 2 ? refined -36.0141 23.0502 -13.0495 0.3114 0.4667 0.2370 -0.0422 0.0195 0.0003 1.4703 0.7575 0.7783 0.2471 0.2508 -0.2455 -0.0535 -0.0516 -0.2849 -0.0278 0.0432 -0.2440 0.1279 0.0646 0.0317 'X-RAY DIFFRACTION' 3 ? refined -34.0504 23.7995 -13.9943 0.3231 0.3854 0.2722 -0.0439 0.0324 0.0088 1.3398 0.3634 1.0953 0.1555 -0.0358 0.0782 -0.2457 0.1068 -0.2277 -0.0380 0.1066 -0.1736 0.0857 -0.0172 0.0950 'X-RAY DIFFRACTION' 4 ? refined -47.4360 52.2996 -18.3132 -0.0493 1.6669 1.5808 -0.0138 0.4944 0.5708 0.8454 1.6529 0.9734 0.1410 0.7177 0.9116 0.0962 -0.3058 0.5772 -0.2678 -0.3121 0.0296 0.0677 0.2103 0.1226 'X-RAY DIFFRACTION' 5 ? refined -35.4618 54.2518 -11.5484 0.2560 1.0405 1.3326 0.0936 0.0941 0.1901 1.1678 0.2640 0.0143 -0.5447 -0.3566 0.1698 -0.0567 0.3096 0.8536 0.5555 0.1867 1.2900 -0.1080 -0.3248 0.0980 'X-RAY DIFFRACTION' 6 ? refined -37.3505 55.5865 -11.6398 0.4441 1.2809 1.8212 0.2461 0.0703 0.0303 1.2943 0.7087 0.8208 -0.7578 -0.8111 0.6192 0.1701 0.2683 1.1757 0.0610 -0.0452 1.4845 -0.3044 -1.1277 0.0250 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 5 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 6 through 25 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 26 through 41 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 5 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 6 through 25 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 26 through 41 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CBV O3P O N N 73 CBV P P N N 74 CBV O1P O N N 75 CBV O2P O N N 76 CBV "O5'" O N N 77 CBV "C5'" C N N 78 CBV "C4'" C N R 79 CBV "O4'" O N N 80 CBV "C3'" C N S 81 CBV "O3'" O N N 82 CBV "C2'" C N R 83 CBV "O2'" O N N 84 CBV "C1'" C N R 85 CBV N1 N N N 86 CBV C2 C N N 87 CBV O2 O N N 88 CBV N3 N N N 89 CBV C4 C N N 90 CBV N4 N N N 91 CBV C5 C N N 92 CBV C6 C N N 93 CBV BR BR N N 94 CBV HO3P H N N 95 CBV HO1P H N N 96 CBV "H5'1" H N N 97 CBV "H5'2" H N N 98 CBV "H4'" H N N 99 CBV "H3'" H N N 100 CBV "HO3'" H N N 101 CBV "H2'" H N N 102 CBV "HO2'" H N N 103 CBV "H1'" H N N 104 CBV HN41 H N N 105 CBV HN42 H N N 106 CBV H6 H N N 107 G OP3 O N N 108 G P P N N 109 G OP1 O N N 110 G OP2 O N N 111 G "O5'" O N N 112 G "C5'" C N N 113 G "C4'" C N R 114 G "O4'" O N N 115 G "C3'" C N S 116 G "O3'" O N N 117 G "C2'" C N R 118 G "O2'" O N N 119 G "C1'" C N R 120 G N9 N Y N 121 G C8 C Y N 122 G N7 N Y N 123 G C5 C Y N 124 G C6 C N N 125 G O6 O N N 126 G N1 N N N 127 G C2 C N N 128 G N2 N N N 129 G N3 N N N 130 G C4 C Y N 131 G HOP3 H N N 132 G HOP2 H N N 133 G "H5'" H N N 134 G "H5''" H N N 135 G "H4'" H N N 136 G "H3'" H N N 137 G "HO3'" H N N 138 G "H2'" H N N 139 G "HO2'" H N N 140 G "H1'" H N N 141 G H8 H N N 142 G H1 H N N 143 G H21 H N N 144 G H22 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 MG MG MG N N 149 MGX CD C N N 150 MGX NE N N N 151 MGX CZ C N N 152 MGX NH1 N N N 153 MGX NH2 N N N 154 MGX HD1 H N N 155 MGX HD2 H N N 156 MGX HD3 H N N 157 MGX HNE H N N 158 MGX HH11 H N N 159 MGX HH12 H N N 160 MGX HNH2 H N N 161 NA NA NA N N 162 U OP3 O N N 163 U P P N N 164 U OP1 O N N 165 U OP2 O N N 166 U "O5'" O N N 167 U "C5'" C N N 168 U "C4'" C N R 169 U "O4'" O N N 170 U "C3'" C N S 171 U "O3'" O N N 172 U "C2'" C N R 173 U "O2'" O N N 174 U "C1'" C N R 175 U N1 N N N 176 U C2 C N N 177 U O2 O N N 178 U N3 N N N 179 U C4 C N N 180 U O4 O N N 181 U C5 C N N 182 U C6 C N N 183 U HOP3 H N N 184 U HOP2 H N N 185 U "H5'" H N N 186 U "H5''" H N N 187 U "H4'" H N N 188 U "H3'" H N N 189 U "HO3'" H N N 190 U "H2'" H N N 191 U "HO2'" H N N 192 U "H1'" H N N 193 U H3 H N N 194 U H5 H N N 195 U H6 H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CBV O3P P sing N N 76 CBV O3P HO3P sing N N 77 CBV P O1P sing N N 78 CBV P O2P doub N N 79 CBV P "O5'" sing N N 80 CBV O1P HO1P sing N N 81 CBV "O5'" "C5'" sing N N 82 CBV "C5'" "C4'" sing N N 83 CBV "C5'" "H5'1" sing N N 84 CBV "C5'" "H5'2" sing N N 85 CBV "C4'" "O4'" sing N N 86 CBV "C4'" "C3'" sing N N 87 CBV "C4'" "H4'" sing N N 88 CBV "O4'" "C1'" sing N N 89 CBV "C3'" "O3'" sing N N 90 CBV "C3'" "C2'" sing N N 91 CBV "C3'" "H3'" sing N N 92 CBV "O3'" "HO3'" sing N N 93 CBV "C2'" "O2'" sing N N 94 CBV "C2'" "C1'" sing N N 95 CBV "C2'" "H2'" sing N N 96 CBV "O2'" "HO2'" sing N N 97 CBV "C1'" N1 sing N N 98 CBV "C1'" "H1'" sing N N 99 CBV N1 C2 sing N N 100 CBV N1 C6 sing N N 101 CBV C2 O2 doub N N 102 CBV C2 N3 sing N N 103 CBV N3 C4 doub N N 104 CBV C4 N4 sing N N 105 CBV C4 C5 sing N N 106 CBV N4 HN41 sing N N 107 CBV N4 HN42 sing N N 108 CBV C5 C6 doub N N 109 CBV C5 BR sing N N 110 CBV C6 H6 sing N N 111 G OP3 P sing N N 112 G OP3 HOP3 sing N N 113 G P OP1 doub N N 114 G P OP2 sing N N 115 G P "O5'" sing N N 116 G OP2 HOP2 sing N N 117 G "O5'" "C5'" sing N N 118 G "C5'" "C4'" sing N N 119 G "C5'" "H5'" sing N N 120 G "C5'" "H5''" sing N N 121 G "C4'" "O4'" sing N N 122 G "C4'" "C3'" sing N N 123 G "C4'" "H4'" sing N N 124 G "O4'" "C1'" sing N N 125 G "C3'" "O3'" sing N N 126 G "C3'" "C2'" sing N N 127 G "C3'" "H3'" sing N N 128 G "O3'" "HO3'" sing N N 129 G "C2'" "O2'" sing N N 130 G "C2'" "C1'" sing N N 131 G "C2'" "H2'" sing N N 132 G "O2'" "HO2'" sing N N 133 G "C1'" N9 sing N N 134 G "C1'" "H1'" sing N N 135 G N9 C8 sing Y N 136 G N9 C4 sing Y N 137 G C8 N7 doub Y N 138 G C8 H8 sing N N 139 G N7 C5 sing Y N 140 G C5 C6 sing N N 141 G C5 C4 doub Y N 142 G C6 O6 doub N N 143 G C6 N1 sing N N 144 G N1 C2 sing N N 145 G N1 H1 sing N N 146 G C2 N2 sing N N 147 G C2 N3 doub N N 148 G N2 H21 sing N N 149 G N2 H22 sing N N 150 G N3 C4 sing N N 151 HOH O H1 sing N N 152 HOH O H2 sing N N 153 MGX CD NE sing N N 154 MGX CD HD1 sing N N 155 MGX CD HD2 sing N N 156 MGX CD HD3 sing N N 157 MGX NE CZ sing N N 158 MGX NE HNE sing N N 159 MGX CZ NH1 sing N N 160 MGX CZ NH2 doub N N 161 MGX NH1 HH11 sing N N 162 MGX NH1 HH12 sing N N 163 MGX NH2 HNH2 sing N N 164 U OP3 P sing N N 165 U OP3 HOP3 sing N N 166 U P OP1 doub N N 167 U P OP2 sing N N 168 U P "O5'" sing N N 169 U OP2 HOP2 sing N N 170 U "O5'" "C5'" sing N N 171 U "C5'" "C4'" sing N N 172 U "C5'" "H5'" sing N N 173 U "C5'" "H5''" sing N N 174 U "C4'" "O4'" sing N N 175 U "C4'" "C3'" sing N N 176 U "C4'" "H4'" sing N N 177 U "O4'" "C1'" sing N N 178 U "C3'" "O3'" sing N N 179 U "C3'" "C2'" sing N N 180 U "C3'" "H3'" sing N N 181 U "O3'" "HO3'" sing N N 182 U "C2'" "O2'" sing N N 183 U "C2'" "C1'" sing N N 184 U "C2'" "H2'" sing N N 185 U "O2'" "HO2'" sing N N 186 U "C1'" N1 sing N N 187 U "C1'" "H1'" sing N N 188 U N1 C2 sing N N 189 U N1 C6 sing N N 190 U C2 O2 doub N N 191 U C2 N3 sing N N 192 U N3 C4 sing N N 193 U N3 H3 sing N N 194 U C4 O4 doub N N 195 U C4 C5 sing N N 196 U C5 C6 doub N N 197 U C5 H5 sing N N 198 U C6 H6 sing N N 199 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5NZ3 'double helix' 5NZ3 'a-form double helix' 5NZ3 'bulge loop' 5NZ3 'mismatched base pair' 5NZ3 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 24 1_555 0.096 -0.144 0.163 1.410 -6.157 -0.513 1 A_C1:G24_A A 1 ? A 24 ? 19 1 1 A CBV 2 1_555 A G 23 1_555 0.312 0.002 0.237 -0.999 -14.612 3.177 2 A_CBV2:G23_A A 2 ? A 23 ? 19 1 1 A G 3 1_555 A C 22 1_555 -0.108 -0.064 0.038 -0.535 1.953 -1.028 3 A_G3:C22_A A 3 ? A 22 ? 19 1 1 A G 4 1_555 A C 21 1_555 -0.201 -0.125 -0.016 1.091 -9.853 1.770 4 A_G4:C21_A A 4 ? A 21 ? 19 1 1 A G 29 1_555 A C 20 1_555 -0.074 -0.144 -0.039 -7.077 -6.431 -2.411 5 A_G29:C20_A A 29 ? A 20 ? 19 1 1 A A 5 1_555 A A 19 1_555 4.195 1.353 -0.835 -1.767 -23.138 -107.636 6 A_A5:A19_A A 5 ? A 19 ? 5 4 1 A A 35 1_555 A U 18 1_555 0.176 -0.058 0.500 12.923 -5.037 0.384 7 A_A35:U18_A A 35 ? A 18 ? 20 1 1 A C 36 1_555 A G 17 1_555 0.082 -0.168 0.378 6.871 -14.739 -4.377 8 A_C36:G17_A A 36 ? A 17 ? 19 1 1 A G 37 1_555 A C 16 1_555 -0.183 -0.077 -0.317 -4.127 -7.689 2.590 9 A_G37:C16_A A 37 ? A 16 ? 19 1 1 A G 38 1_555 A C 15 1_555 -0.316 -0.166 -0.254 -5.221 -3.884 0.423 10 A_G38:C15_A A 38 ? A 15 ? 19 1 1 A CBV 39 1_555 A G 14 1_555 -0.053 -0.127 -0.154 -0.563 -5.142 0.624 11 A_CBV39:G14_A A 39 ? A 14 ? 19 1 1 A G 40 1_555 A C 13 1_555 -0.215 -0.234 0.141 -2.699 -14.239 -1.893 12 A_G40:C13_A A 40 ? A 13 ? 19 1 1 A C 41 1_555 A G 12 1_555 0.260 -0.243 0.487 -7.158 -13.678 -2.275 13 A_C41:G12_A A 41 ? A 12 ? 19 1 1 B C 1 1_555 B G 24 1_555 -0.489 -0.156 0.375 -6.155 -2.306 -2.641 14 B_C1:G24_B B 1 ? B 24 ? 19 1 1 B CBV 2 1_555 B G 23 1_555 -0.602 0.298 0.631 -2.685 -15.296 8.408 15 B_CBV2:G23_B B 2 ? B 23 ? 19 1 1 B G 3 1_555 B C 22 1_555 -0.122 -0.122 0.064 1.729 -5.663 -1.130 16 B_G3:C22_B B 3 ? B 22 ? 19 1 1 B G 4 1_555 B C 21 1_555 -0.134 -0.136 -0.026 0.502 -6.604 0.404 17 B_G4:C21_B B 4 ? B 21 ? 19 1 1 B G 29 1_555 B C 20 1_555 -0.257 -0.152 -0.060 -8.522 -8.837 -0.540 18 B_G29:C20_B B 29 ? B 20 ? 19 1 1 B A 5 1_555 B A 19 1_555 3.954 1.721 -0.908 -6.192 -22.018 -105.740 19 B_A5:A19_B B 5 ? B 19 ? 5 4 1 B A 35 1_555 B U 18 1_555 0.133 -0.106 0.136 10.925 -4.893 -3.579 20 B_A35:U18_B B 35 ? B 18 ? 20 1 1 B G 12 1_555 B C 41 1_555 -0.149 -0.291 0.186 1.547 -14.836 -1.178 21 B_G12:C41_B B 12 ? B 41 ? 19 1 1 B C 13 1_555 B G 40 1_555 0.091 -0.210 0.138 3.818 -8.964 -0.828 22 B_C13:G40_B B 13 ? B 40 ? 19 1 1 B G 14 1_555 B CBV 39 1_555 -0.040 -0.112 -0.172 -0.665 -5.769 0.771 23 B_G14:CBV39_B B 14 ? B 39 ? 19 1 1 B C 15 1_555 B G 38 1_555 0.233 -0.239 -0.113 2.279 -5.702 -0.976 24 B_C15:G38_B B 15 ? B 38 ? 19 1 1 B C 16 1_555 B G 37 1_555 0.272 -0.180 0.010 0.911 -8.509 1.067 25 B_C16:G37_B B 16 ? B 37 ? 19 1 1 B G 17 1_555 B C 36 1_555 -0.266 -0.189 0.092 -6.897 -11.794 1.124 26 B_G17:C36_B B 17 ? B 36 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 24 1_555 A CBV 2 1_555 A G 23 1_555 0.614 -1.615 3.250 0.137 1.910 37.998 -2.715 -0.925 3.170 2.930 -0.210 38.045 1 AA_C1CBV2:G23G24_AA A 1 ? A 24 ? A 2 ? A 23 ? 1 A CBV 2 1_555 A G 23 1_555 A G 3 1_555 A C 22 1_555 -0.704 -2.130 3.011 1.063 8.839 26.017 -6.250 1.694 2.154 18.940 -2.277 27.473 2 AA_CBV2G3:C22G23_AA A 2 ? A 23 ? A 3 ? A 22 ? 1 A G 3 1_555 A C 22 1_555 A G 4 1_555 A C 21 1_555 0.584 -1.840 3.309 1.300 7.085 26.541 -5.518 -0.927 2.759 15.082 -2.768 27.484 3 AA_G3G4:C21C22_AA A 3 ? A 22 ? A 4 ? A 21 ? 1 A G 4 1_555 A C 21 1_555 A G 29 1_555 A C 20 1_555 -1.338 -1.471 3.287 -3.798 5.306 40.488 -2.677 1.499 3.185 7.607 5.445 40.989 4 AA_G4G29:C20C21_AA A 4 ? A 21 ? A 29 ? A 20 ? 1 A G 29 1_555 A C 20 1_555 A A 5 1_555 A A 19 1_555 -2.859 -2.191 3.635 2.219 13.121 27.941 -6.498 5.771 2.181 25.429 -4.300 30.891 5 AA_G29A5:A19C20_AA A 29 ? A 20 ? A 5 ? A 19 ? 1 A A 5 1_555 A A 19 1_555 A A 35 1_555 A U 18 1_555 -1.471 -0.930 3.316 5.680 3.541 79.562 -0.818 1.297 3.186 2.763 -4.431 79.796 6 AA_A5A35:U18A19_AA A 5 ? A 19 ? A 35 ? A 18 ? 1 A A 35 1_555 A U 18 1_555 A C 36 1_555 A G 17 1_555 -0.739 -1.406 3.505 -6.705 -6.678 31.606 -1.183 0.002 3.789 -11.930 11.979 32.958 7 AA_A35C36:G17U18_AA A 35 ? A 18 ? A 36 ? A 17 ? 1 A C 36 1_555 A G 17 1_555 A G 37 1_555 A C 16 1_555 0.658 -1.913 3.744 1.271 2.475 31.219 -4.066 -0.948 3.609 4.587 -2.356 31.340 8 AA_C36G37:C16G17_AA A 36 ? A 17 ? A 37 ? A 16 ? 1 A G 37 1_555 A C 16 1_555 A G 38 1_555 A C 15 1_555 -0.649 -2.119 3.305 -3.095 4.891 28.104 -5.343 0.636 2.954 9.939 6.289 28.682 9 AA_G37G38:C15C16_AA A 37 ? A 16 ? A 38 ? A 15 ? 1 A G 38 1_555 A C 15 1_555 A CBV 39 1_555 A G 14 1_555 0.027 -2.158 3.280 -2.510 -0.027 31.023 -4.017 -0.531 3.269 -0.050 4.683 31.122 10 AA_G38CBV39:G14C15_AA A 38 ? A 15 ? A 39 ? A 14 ? 1 A CBV 39 1_555 A G 14 1_555 A G 40 1_555 A C 13 1_555 -1.127 -2.043 3.264 -3.232 7.756 26.002 -6.125 1.638 2.672 16.691 6.956 27.303 11 AA_CBV39G40:C13G14_AA A 39 ? A 14 ? A 40 ? A 13 ? 1 A G 40 1_555 A C 13 1_555 A C 41 1_555 A G 12 1_555 0.352 -1.459 3.383 -0.258 4.289 34.753 -3.076 -0.624 3.184 7.147 0.430 35.010 12 AA_G40C41:G12C13_AA A 40 ? A 13 ? A 41 ? A 12 ? 1 B C 1 1_555 B G 24 1_555 B CBV 2 1_555 B G 23 1_555 0.612 -1.764 3.003 -0.683 4.274 34.723 -3.505 -1.109 2.761 7.126 1.139 34.984 13 BB_C1CBV2:G23G24_BB B 1 ? B 24 ? B 2 ? B 23 ? 1 B CBV 2 1_555 B G 23 1_555 B G 3 1_555 B C 22 1_555 -0.974 -1.812 2.844 0.697 10.384 34.482 -4.102 1.656 2.204 17.042 -1.144 35.973 14 BB_CBV2G3:C22G23_BB B 2 ? B 23 ? B 3 ? B 22 ? 1 B G 3 1_555 B C 22 1_555 B G 4 1_555 B C 21 1_555 0.422 -1.603 3.421 -0.099 6.187 29.414 -4.358 -0.834 3.027 12.018 0.192 30.043 15 BB_G3G4:C21C22_BB B 3 ? B 22 ? B 4 ? B 21 ? 1 B G 4 1_555 B C 21 1_555 B G 29 1_555 B C 20 1_555 -1.027 -1.472 3.241 -0.776 6.053 43.285 -2.537 1.309 3.035 8.158 1.046 43.693 16 BB_G4G29:C20C21_BB B 4 ? B 21 ? B 29 ? B 20 ? 1 B G 29 1_555 B C 20 1_555 B A 5 1_555 B A 19 1_555 -2.705 -1.981 3.520 2.987 11.439 27.256 -6.078 5.861 2.223 22.953 -5.994 29.665 17 BB_G29A5:A19C20_BB B 29 ? B 20 ? B 5 ? B 19 ? 1 B A 5 1_555 B A 19 1_555 B A 35 1_555 B U 18 1_555 -1.529 -1.019 3.508 10.528 2.603 80.133 -0.857 1.466 3.293 2.014 -8.144 80.741 18 BB_A5A35:U18A19_BB B 5 ? B 19 ? B 35 ? B 18 ? 1 B G 12 1_555 B C 41 1_555 B C 13 1_555 B G 40 1_555 -0.620 -1.568 3.204 -3.181 4.254 34.027 -3.284 0.573 3.036 7.215 5.394 34.427 19 BB_G12C13:G40C41_BB B 12 ? B 41 ? B 13 ? B 40 ? 1 B C 13 1_555 B G 40 1_555 B G 14 1_555 B CBV 39 1_555 0.829 -2.082 3.369 1.721 7.681 25.721 -6.350 -1.365 2.693 16.762 -3.756 26.879 20 BB_C13G14:CBV39G40_BB B 13 ? B 40 ? B 14 ? B 39 ? 1 B G 14 1_555 B CBV 39 1_555 B C 15 1_555 B G 38 1_555 -0.075 -2.168 3.271 -0.012 -1.880 33.609 -3.432 0.128 3.384 -3.248 0.021 33.660 21 BB_G14C15:G38CBV39_BB B 14 ? B 39 ? B 15 ? B 38 ? 1 B C 15 1_555 B G 38 1_555 B C 16 1_555 B G 37 1_555 0.516 -2.195 3.369 0.357 1.838 28.282 -4.912 -0.970 3.229 3.757 -0.730 28.343 22 BB_C15C16:G37G38_BB B 15 ? B 38 ? B 16 ? B 37 ? 1 B C 16 1_555 B G 37 1_555 B G 17 1_555 B C 36 1_555 -0.492 -1.954 3.508 2.026 4.190 29.329 -4.718 1.398 3.164 8.209 -3.969 29.688 23 BB_C16G17:C36G37_BB B 16 ? B 37 ? B 17 ? B 36 ? # _pdbx_audit_support.funding_organization 'Cancer Research UK' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 'program grant A18604' _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5NZ3 _atom_sites.fract_transf_matrix[1][1] 0.011977 _atom_sites.fract_transf_matrix[1][2] 0.006915 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013830 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015135 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C H MG N NA O P # loop_