HEADER RNA 13-MAY-17 5NZD TITLE THE STRUCTURE OF THE THERMOBIFIDA FUSCA GUANIDINE III RIBOSWITCH IN TITLE 2 SPACE GROUP P212121. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANIDINE III RIBOSWITCH; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 4 ORGANISM_TAXID: 2021 KEYWDS GUANIDINE III RIBOSWITCH, STEM-LOOP, PSEUDOKNOT, RNA, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,J.WANG,D.M.J.LILLEY REVDAT 2 29-NOV-17 5NZD 1 JRNL REVDAT 1 18-OCT-17 5NZD 0 JRNL AUTH L.HUANG,J.WANG,T.J.WILSON,D.M.J.LILLEY JRNL TITL STRUCTURE OF THE GUANIDINE III RIBOSWITCH. JRNL REF CELL CHEM BIOL V. 24 1407 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 28988949 JRNL DOI 10.1016/J.CHEMBIOL.2017.08.021 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2219: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 33860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1552 - 4.5938 0.98 2700 157 0.1578 0.1607 REMARK 3 2 4.5938 - 3.6469 0.99 2744 123 0.1499 0.1797 REMARK 3 3 3.6469 - 3.1861 0.95 2642 152 0.1734 0.2352 REMARK 3 4 3.1861 - 2.8948 0.98 2676 121 0.2392 0.2849 REMARK 3 5 2.8948 - 2.6874 0.99 2760 130 0.2925 0.3392 REMARK 3 6 2.6874 - 2.5290 0.98 2725 134 0.3147 0.3981 REMARK 3 7 2.5290 - 2.4023 0.98 2680 143 0.3367 0.4008 REMARK 3 8 2.4023 - 2.2978 0.98 2701 164 0.3663 0.4095 REMARK 3 9 2.2978 - 2.2093 0.97 2654 137 0.3784 0.4159 REMARK 3 10 2.2093 - 2.1331 0.97 2694 114 0.4108 0.4230 REMARK 3 11 2.1331 - 2.0664 0.95 2646 137 0.4361 0.4392 REMARK 3 12 2.0664 - 2.0073 0.94 2603 123 0.4586 0.4706 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1986 REMARK 3 ANGLE : 1.587 3102 REMARK 3 CHIRALITY : 0.044 404 REMARK 3 PLANARITY : 0.008 84 REMARK 3 DIHEDRAL : 14.222 944 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9763 6.6042 -1.2909 REMARK 3 T TENSOR REMARK 3 T11: 0.6354 T22: 0.7839 REMARK 3 T33: 0.3577 T12: -0.0203 REMARK 3 T13: 0.0255 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.4585 L22: 0.3312 REMARK 3 L33: 7.2118 L12: 0.4327 REMARK 3 L13: 1.9380 L23: 1.4636 REMARK 3 S TENSOR REMARK 3 S11: 0.1768 S12: -0.0884 S13: 0.0020 REMARK 3 S21: -0.1040 S22: 0.1593 S23: -0.1224 REMARK 3 S31: -0.3861 S32: 0.3068 S33: -0.3298 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1480 -2.2682 -9.9701 REMARK 3 T TENSOR REMARK 3 T11: 0.8633 T22: 0.6236 REMARK 3 T33: 0.5186 T12: -0.0290 REMARK 3 T13: -0.0322 T23: 0.0745 REMARK 3 L TENSOR REMARK 3 L11: 9.1571 L22: 1.4758 REMARK 3 L33: 7.4355 L12: -1.4575 REMARK 3 L13: 6.9437 L23: 0.4315 REMARK 3 S TENSOR REMARK 3 S11: -0.4258 S12: -0.2025 S13: -1.3523 REMARK 3 S21: 0.6986 S22: 0.8891 S23: 0.0020 REMARK 3 S31: -0.1376 S32: 0.2126 S33: -0.4027 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1057 10.3206 5.9646 REMARK 3 T TENSOR REMARK 3 T11: 0.7364 T22: 1.1722 REMARK 3 T33: 0.3694 T12: -0.0261 REMARK 3 T13: -0.0863 T23: -0.0679 REMARK 3 L TENSOR REMARK 3 L11: 1.9775 L22: 2.5036 REMARK 3 L33: 2.4036 L12: -0.6790 REMARK 3 L13: -0.8858 L23: -0.6288 REMARK 3 S TENSOR REMARK 3 S11: 0.3995 S12: 0.3228 S13: 0.0242 REMARK 3 S21: -0.3695 S22: -0.2482 S23: -0.2042 REMARK 3 S31: -0.6639 S32: 0.9080 S33: -0.1071 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8755 -21.4894 -2.4281 REMARK 3 T TENSOR REMARK 3 T11: 0.4627 T22: 0.6447 REMARK 3 T33: 0.3146 T12: 0.0176 REMARK 3 T13: -0.0693 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.2337 L22: 3.2775 REMARK 3 L33: 8.5766 L12: 0.7207 REMARK 3 L13: -1.0830 L23: -1.6233 REMARK 3 S TENSOR REMARK 3 S11: 0.3170 S12: 0.0482 S13: -0.0137 REMARK 3 S21: -0.1078 S22: 0.1927 S23: 0.2344 REMARK 3 S31: 0.0634 S32: -0.1136 S33: -0.4554 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1291 -18.9432 11.9392 REMARK 3 T TENSOR REMARK 3 T11: 0.5902 T22: 0.8293 REMARK 3 T33: 0.3256 T12: 0.2148 REMARK 3 T13: 0.0019 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 5.4177 L22: 5.3632 REMARK 3 L33: 9.2055 L12: -0.4584 REMARK 3 L13: -2.5835 L23: 0.4902 REMARK 3 S TENSOR REMARK 3 S11: 0.2255 S12: 0.1300 S13: 0.1435 REMARK 3 S21: 0.0303 S22: 0.2702 S23: 0.3656 REMARK 3 S31: -0.9767 S32: -0.9816 S33: -0.4899 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3195 -20.4435 -13.7478 REMARK 3 T TENSOR REMARK 3 T11: 0.6941 T22: 0.4977 REMARK 3 T33: 0.3299 T12: 0.0154 REMARK 3 T13: -0.0364 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 4.6715 L22: 3.9883 REMARK 3 L33: 7.5558 L12: -1.3416 REMARK 3 L13: 0.3172 L23: -0.5905 REMARK 3 S TENSOR REMARK 3 S11: 0.2379 S12: 0.3802 S13: 0.3039 REMARK 3 S21: -1.0683 S22: 0.1905 S23: -0.0187 REMARK 3 S31: -0.1975 S32: -0.3290 S33: -0.4339 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2490 -13.9455 -12.9373 REMARK 3 T TENSOR REMARK 3 T11: 0.8201 T22: 0.8467 REMARK 3 T33: 0.4750 T12: 0.1044 REMARK 3 T13: 0.0834 T23: 0.0700 REMARK 3 L TENSOR REMARK 3 L11: 9.0847 L22: 0.2546 REMARK 3 L33: 4.2952 L12: 0.1055 REMARK 3 L13: -6.2251 L23: 0.0652 REMARK 3 S TENSOR REMARK 3 S11: 0.1483 S12: 1.1340 S13: 1.0672 REMARK 3 S21: -0.8241 S22: 0.4892 S23: -0.0466 REMARK 3 S31: -0.6166 S32: -1.0136 S33: -0.5189 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7817 -26.1883 -3.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.4948 T22: 0.7099 REMARK 3 T33: 0.4102 T12: -0.0523 REMARK 3 T13: -0.0174 T23: 0.1467 REMARK 3 L TENSOR REMARK 3 L11: 2.8648 L22: 9.6540 REMARK 3 L33: 7.0422 L12: -0.9259 REMARK 3 L13: 4.4455 L23: -1.7669 REMARK 3 S TENSOR REMARK 3 S11: 0.3168 S12: -0.0501 S13: -0.4383 REMARK 3 S21: 0.1257 S22: 0.4393 S23: 0.8761 REMARK 3 S31: 0.6391 S32: -1.3495 S33: -0.7725 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9722 -24.8222 10.5379 REMARK 3 T TENSOR REMARK 3 T11: 0.4802 T22: 0.6373 REMARK 3 T33: 0.2830 T12: -0.0287 REMARK 3 T13: -0.0413 T23: 0.0814 REMARK 3 L TENSOR REMARK 3 L11: 5.9317 L22: 6.9771 REMARK 3 L33: 5.4881 L12: 1.2114 REMARK 3 L13: 3.6528 L23: 4.8897 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: -0.1790 S13: -0.4450 REMARK 3 S21: 0.2297 S22: 0.1955 S23: -0.0059 REMARK 3 S31: 0.6630 S32: 0.1971 S33: -0.3578 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92019 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33860 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.007 REMARK 200 RESOLUTION RANGE LOW (A) : 42.146 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.120 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 1.28200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE, 0.05 M MES PH REMARK 280 5.6, 20% V/V 2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.73000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.14600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.30650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.14600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.73000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.30650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' C A 1 O2P CBV A 2 0.42 REMARK 500 O3' C B 1 O2P CBV B 2 0.44 REMARK 500 OP2 G A 7 O HOH A 201 1.80 REMARK 500 O3P CBV B 2 O HOH B 201 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 12 OP2 REMARK 620 2 C A 13 OP2 88.3 REMARK 620 3 HOH A 205 O 79.4 66.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 30 OP2 REMARK 620 2 C A 31 OP2 70.0 REMARK 620 3 HOH A 203 O 67.5 57.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 30 OP2 REMARK 620 2 C B 31 OP2 90.5 REMARK 620 3 HOH B 207 O 96.6 124.2 REMARK 620 4 HOH B 211 O 166.3 90.3 94.2 REMARK 620 5 HOH B 206 O 76.8 80.2 155.1 89.9 REMARK 620 6 HOH B 210 O 88.6 148.8 86.8 83.7 69.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide C B 1 and CBV B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide CBV B 2 and G B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G B 38 and CBV B REMARK 800 39 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide CBV B 39 and G B REMARK 800 40 DBREF 5NZD A 1 41 PDB 5NZD 5NZD 1 41 DBREF 5NZD B 1 41 PDB 5NZD 5NZD 1 41 SEQRES 1 A 41 C CBV G G A C G A G G U G C SEQRES 2 A 41 G C C G U A C C C G G U C SEQRES 3 A 41 A G G A C A A G A C G G CBV SEQRES 4 A 41 G C SEQRES 1 B 41 C CBV G G A C G A G G U G C SEQRES 2 B 41 G C C G U A C C C G G U C SEQRES 3 B 41 A G G A C A A G A C G G CBV SEQRES 4 B 41 G C HET CBV A 2 22 HET CBV A 39 22 HET CBV B 2 22 HET CBV B 39 22 HET MG A 101 1 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET NA A 106 1 HET NA A 107 1 HET ACT A 108 7 HET MG B 101 1 HET MG B 102 1 HET MG B 103 1 HET MG B 104 1 HET ACT B 105 7 HETNAM CBV 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM ACT ACETATE ION FORMUL 1 CBV 4(C9 H13 BR N3 O8 P) FORMUL 3 MG 9(MG 2+) FORMUL 8 NA 2(NA 1+) FORMUL 10 ACT 2(C2 H3 O2 1-) FORMUL 16 HOH *24(H2 O) LINK O3' C A 1 P CBV A 2 1555 1555 1.63 LINK O3' CBV A 2 P G A 3 1555 1555 1.61 LINK OP2 G A 12 MG MG A 101 1555 1555 2.57 LINK OP2 C A 13 MG MG A 101 1555 1555 2.48 LINK OP2 A A 30 MG MG A 105 1555 1555 2.53 LINK OP2 C A 31 MG MG A 105 1555 1555 2.13 LINK O3' G A 38 P CBV A 39 1555 1555 1.63 LINK O3' CBV A 39 P G A 40 1555 1555 1.62 LINK O3' C B 1 P CBV B 2 1555 1555 1.62 LINK O3' CBV B 2 P G B 3 1555 1555 1.61 LINK OP2 A B 30 MG MG B 101 1555 1555 1.88 LINK OP2 C B 31 MG MG B 101 1555 1555 1.82 LINK O3' G B 38 P CBV B 39 1555 1555 1.62 LINK O3' CBV B 39 P G B 40 1555 1555 1.61 LINK MG MG A 101 O HOH A 205 1555 1555 2.61 LINK MG MG A 102 O HOH A 209 1555 1555 2.22 LINK MG MG A 104 O HOH A 208 1555 1555 2.83 LINK MG MG A 105 O HOH A 203 1555 1555 2.54 LINK MG MG B 101 O HOH B 207 1555 1555 1.96 LINK MG MG B 101 O HOH B 211 1555 1555 2.30 LINK MG MG B 101 O HOH B 206 1555 1555 2.37 LINK MG MG B 101 O HOH B 210 1555 1555 2.27 LINK MG MG B 102 O HOH B 208 1555 1555 2.51 LINK MG MG B 104 O HOH B 215 1555 1555 2.22 SITE 1 AC1 3 G A 12 C A 13 HOH A 205 SITE 1 AC2 2 G A 40 HOH A 209 SITE 1 AC3 1 HOH A 208 SITE 1 AC4 4 A A 30 C A 31 A A 32 HOH A 203 SITE 1 AC5 1 A A 27 SITE 1 AC6 5 C A 6 G A 7 A A 8 C A 16 SITE 2 AC6 5 G A 17 SITE 1 AC7 6 A B 30 C B 31 HOH B 206 HOH B 207 SITE 2 AC7 6 HOH B 210 HOH B 211 SITE 1 AC8 1 HOH B 208 SITE 1 AC9 2 G B 23 HOH B 215 SITE 1 AD1 4 C B 6 G B 7 A B 8 G B 17 SITE 1 AD2 8 C A 1 G A 24 U A 25 G B 3 SITE 2 AD2 8 G B 23 G B 24 A B 27 HOH B 201 SITE 1 AD3 8 C B 1 G B 4 C B 22 G B 23 SITE 2 AD3 8 G B 24 A B 27 G B 28 HOH B 201 SITE 1 AD4 10 C A 26 G B 10 U B 11 G B 14 SITE 2 AD4 10 C B 15 C B 16 A B 30 C B 31 SITE 3 AD4 10 G B 37 G B 40 SITE 1 AD5 11 C A 26 G B 10 U B 11 G B 12 SITE 2 AD5 11 C B 13 G B 14 C B 15 A B 30 SITE 3 AD5 11 C B 31 G B 38 C B 41 CRYST1 49.460 64.613 84.292 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011864 0.00000