HEADER TRANSFERASE 14-MAY-17 5NZG TITLE CRYSTAL STRUCTURE OF UDP-GLUCOSE PYROPHOSPHORYLASE S374W MUTANT FROM TITLE 2 LEISHMANIA MAJOR IN COMPLEX WITH UDP-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE PYROPHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: UGP, LMJF_18_0990; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NTP-TRANSFERASE, PATHOGEN, ALLOSTERY, CATALYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.T.CRAMER,J.I.FUEHRING,P.BARUCH,C.BRUETTING,R.HESSE,H.-J.KNOELKER, AUTHOR 2 R.GERARDY-SCHAHN,R.FEDOROV REVDAT 2 17-JAN-24 5NZG 1 COMPND HETNAM REVDAT 1 18-APR-18 5NZG 0 JRNL AUTH J.T.CRAMER,J.I.FUEHRING,P.BARUCH,C.BRUETTING,H.-J.KNOELKER, JRNL AUTH 2 R.GERARDY-SCHAHN,R.FEDOROV JRNL TITL DECODING ALLOSTERIC NETWORKS IN BIOCATALYSTS: RATIONAL JRNL TITL 2 APPROACH TO THERAPIES AND BIOTECHNOLOGIES JRNL REF ACS CATALYSIS V. 8 2018 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.7B03714 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 64977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9909 - 4.5487 1.00 2877 122 0.1837 0.2012 REMARK 3 2 4.5487 - 3.6109 1.00 2776 127 0.1729 0.2166 REMARK 3 3 3.6109 - 3.1546 1.00 2709 149 0.1925 0.2075 REMARK 3 4 3.1546 - 2.8662 1.00 2708 147 0.2083 0.2201 REMARK 3 5 2.8662 - 2.6608 1.00 2709 138 0.2175 0.2148 REMARK 3 6 2.6608 - 2.5040 1.00 2675 142 0.2260 0.2721 REMARK 3 7 2.5040 - 2.3786 1.00 2691 140 0.2242 0.2682 REMARK 3 8 2.3786 - 2.2750 1.00 2661 163 0.2366 0.2619 REMARK 3 9 2.2750 - 2.1875 1.00 2691 138 0.2297 0.2440 REMARK 3 10 2.1875 - 2.1120 1.00 2670 134 0.2309 0.2938 REMARK 3 11 2.1120 - 2.0459 1.00 2675 138 0.2283 0.2799 REMARK 3 12 2.0459 - 1.9875 1.00 2667 123 0.2523 0.2444 REMARK 3 13 1.9875 - 1.9351 1.00 2637 161 0.2490 0.2929 REMARK 3 14 1.9351 - 1.8879 1.00 2666 153 0.2506 0.2898 REMARK 3 15 1.8879 - 1.8450 1.00 2669 144 0.2637 0.2871 REMARK 3 16 1.8450 - 1.8057 1.00 2622 150 0.2653 0.2770 REMARK 3 17 1.8057 - 1.7696 1.00 2663 134 0.2899 0.2873 REMARK 3 18 1.7696 - 1.7362 1.00 2692 141 0.2942 0.3450 REMARK 3 19 1.7362 - 1.7052 1.00 2650 138 0.3078 0.3766 REMARK 3 20 1.7052 - 1.6763 1.00 2637 142 0.3181 0.3333 REMARK 3 21 1.6763 - 1.6493 1.00 2673 159 0.3297 0.3513 REMARK 3 22 1.6493 - 1.6239 1.00 2606 137 0.3231 0.3167 REMARK 3 23 1.6239 - 1.6000 1.00 2693 140 0.3383 0.3637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3846 REMARK 3 ANGLE : 0.446 5215 REMARK 3 CHIRALITY : 0.040 596 REMARK 3 PLANARITY : 0.003 669 REMARK 3 DIHEDRAL : 15.628 1410 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78616 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.11 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02200 REMARK 200 FOR THE DATA SET : 23.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35400 REMARK 200 FOR SHELL : 2.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2M2A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 100 MM BIS-TRIS PH 6.8, REMARK 280 0.2 M LI2SO4, 2 MM DTT, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.90000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.90000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.65000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.75000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.90000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.75000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.90000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 958 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1048 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 489 REMARK 465 GLN A 490 REMARK 465 SER A 491 REMARK 465 THR A 492 REMARK 465 ASN A 493 REMARK 465 LYS A 494 REMARK 465 MET A 495 REMARK 465 ARG A 496 REMARK 465 PRO A 497 REMARK 465 LEU A 498 REMARK 465 GLU A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 EDO A 612 O HOH A 701 0.77 REMARK 500 HO2 EDO A 612 O HOH A 701 1.18 REMARK 500 O HOH A 713 O HOH A 905 2.08 REMARK 500 C1 EDO A 609 O HOH A 704 2.08 REMARK 500 O HOH A 705 O HOH A 797 2.11 REMARK 500 O THR A 44 O HOH A 702 2.17 REMARK 500 O PRO A 411 O HOH A 703 2.17 REMARK 500 O1 EDO A 609 O HOH A 704 2.17 REMARK 500 O HOH A 861 O HOH A 928 2.19 REMARK 500 NH2 ARG A 249 O HOH A 705 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1082 O HOH A 1082 4566 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 285 CB SER A 285 OG -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 65 -33.90 -136.82 REMARK 500 ASN A 82 29.82 -158.19 REMARK 500 ASP A 93 -164.64 -126.19 REMARK 500 CYS A 121 -63.35 -132.21 REMARK 500 HIS A 124 44.67 -108.97 REMARK 500 GLU A 157 -16.78 -141.08 REMARK 500 TRP A 178 89.64 -152.13 REMARK 500 ASN A 181 88.97 -155.97 REMARK 500 PRO A 189 30.87 -94.41 REMARK 500 PHE A 399 31.50 71.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UPG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 614 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M2A RELATED DB: PDB REMARK 900 RELATED ID: 4M2B RELATED DB: PDB REMARK 900 RELATED ID: 4J18 RELATED DB: PDB REMARK 900 RELATED ID: 4M28 RELATED DB: PDB REMARK 900 RELATED ID: 2OEF RELATED DB: PDB REMARK 900 RELATED ID: 2OEG RELATED DB: PDB DBREF 5NZG A 1 494 UNP Q4QDU3 Q4QDU3_LEIMA 1 494 SEQADV 5NZG TRP A 374 UNP Q4QDU3 SER 374 ENGINEERED MUTATION SEQADV 5NZG MET A 495 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZG ARG A 496 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZG PRO A 497 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZG LEU A 498 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZG GLU A 499 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZG HIS A 500 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZG HIS A 501 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZG HIS A 502 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZG HIS A 503 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZG HIS A 504 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZG HIS A 505 UNP Q4QDU3 EXPRESSION TAG SEQRES 1 A 505 MET GLU ASN ASP MET LYS SER LEU SER ALA ALA ALA GLN SEQRES 2 A 505 ALA CYS VAL LYS LYS MET ARG ASP ALA LYS VAL ASN GLU SEQRES 3 A 505 ALA CYS ILE ARG THR PHE ILE ALA GLN HIS VAL MET VAL SEQRES 4 A 505 SER LYS GLY GLU THR GLY SER ILE PRO ASP SER ALA ILE SEQRES 5 A 505 MET PRO VAL ASP SER LEU ASP ALA LEU ASP SER LEU THR SEQRES 6 A 505 ILE GLU CYS ASP ASN ALA VAL LEU GLN SER THR VAL VAL SEQRES 7 A 505 LEU LYS LEU ASN GLY GLY LEU GLY THR GLY MET GLY LEU SEQRES 8 A 505 CYS ASP ALA LYS THR LEU LEU GLU VAL LYS ASP GLY LYS SEQRES 9 A 505 THR PHE LEU ASP PHE THR ALA LEU GLN VAL GLN TYR LEU SEQRES 10 A 505 ARG GLN HIS CYS SER GLU HIS LEU ARG PHE MET LEU MET SEQRES 11 A 505 ASP SER PHE ASN THR SER ALA SER THR LYS SER PHE LEU SEQRES 12 A 505 LYS ALA ARG TYR PRO TRP LEU TYR GLN VAL PHE ASP SER SEQRES 13 A 505 GLU VAL GLU LEU MET GLN ASN GLN VAL PRO LYS ILE LEU SEQRES 14 A 505 GLN ASP THR LEU GLU PRO ALA ALA TRP ALA GLU ASN PRO SEQRES 15 A 505 ALA TYR GLU TRP ALA PRO PRO GLY HIS GLY ASP ILE TYR SEQRES 16 A 505 THR ALA LEU TYR GLY SER GLY LYS LEU GLN GLU LEU VAL SEQRES 17 A 505 GLU GLN GLY TYR ARG TYR MET PHE VAL SER ASN GLY ASP SEQRES 18 A 505 ASN LEU GLY ALA THR ILE ASP LYS ARG VAL LEU ALA TYR SEQRES 19 A 505 MET GLU LYS GLU LYS ILE ASP PHE LEU MET GLU VAL CYS SEQRES 20 A 505 ARG ARG THR GLU SER ASP LYS LYS GLY GLY HIS LEU ALA SEQRES 21 A 505 ARG GLN THR VAL TYR VAL LYS GLY LYS ASP GLY GLN PRO SEQRES 22 A 505 ASP ALA GLU LYS ARG VAL LEU LEU LEU ARG GLU SER ALA SEQRES 23 A 505 GLN CYS PRO LYS ALA ASP MET GLU SER PHE GLN ASP ILE SEQRES 24 A 505 ASN LYS TYR SER PHE PHE ASN THR ASN ASN LEU TRP ILE SEQRES 25 A 505 ARG LEU PRO VAL LEU LEU GLU THR MET GLN GLU HIS GLY SEQRES 26 A 505 GLY THR LEU PRO LEU PRO VAL ILE ARG ASN GLU LYS THR SEQRES 27 A 505 VAL ASP SER SER ASN SER ALA SER PRO LYS VAL TYR GLN SEQRES 28 A 505 LEU GLU THR ALA MET GLY ALA ALA ILE ALA MET PHE GLU SEQRES 29 A 505 SER ALA SER ALA ILE VAL VAL PRO ARG TRP ARG PHE ALA SEQRES 30 A 505 PRO VAL LYS THR CYS ALA ASP LEU LEU ALA LEU ARG SER SEQRES 31 A 505 ASP ALA TYR VAL VAL THR ASP ASP PHE ARG LEU VAL LEU SEQRES 32 A 505 ASP ASP ARG CYS HIS GLY HIS PRO PRO VAL VAL ASP LEU SEQRES 33 A 505 ASP SER ALA HIS TYR LYS MET MET ASN GLY PHE GLU LYS SEQRES 34 A 505 LEU VAL GLN HIS GLY VAL PRO SER LEU VAL GLU CYS LYS SEQRES 35 A 505 ARG VAL THR VAL LYS GLY LEU VAL GLN PHE GLY ALA GLY SEQRES 36 A 505 ASN VAL LEU THR GLY THR VAL THR ILE GLU ASN THR ASP SEQRES 37 A 505 SER ALA SER ALA PHE VAL ILE PRO ASP GLY ALA LYS LEU SEQRES 38 A 505 ASN ASP THR THR ALA SER PRO GLN GLN SER THR ASN LYS SEQRES 39 A 505 MET ARG PRO LEU GLU HIS HIS HIS HIS HIS HIS HET UPG A 601 36 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 10 HET EDO A 605 10 HET EDO A 606 10 HET EDO A 607 10 HET EDO A 608 10 HET EDO A 609 10 HET EDO A 610 10 HET EDO A 611 10 HET EDO A 612 10 HET EDO A 613 10 HET EDO A 614 10 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 UPG C15 H24 N2 O17 P2 FORMUL 3 EDO 13(C2 H6 O2) FORMUL 16 HOH *417(H2 O) HELIX 1 AA1 SER A 9 ALA A 22 1 14 HELIX 2 AA2 ASN A 25 LYS A 41 1 17 HELIX 3 AA3 PRO A 48 ILE A 52 5 5 HELIX 4 AA4 ASP A 62 LEU A 64 5 3 HELIX 5 AA5 ASP A 69 SER A 75 1 7 HELIX 6 AA6 GLY A 86 GLY A 90 5 5 HELIX 7 AA7 ALA A 94 LEU A 97 5 4 HELIX 8 AA8 PHE A 106 CYS A 121 1 16 HELIX 9 AA9 THR A 135 TYR A 147 1 13 HELIX 10 AB1 TYR A 147 GLN A 152 1 6 HELIX 11 AB2 VAL A 153 VAL A 158 1 6 HELIX 12 AB3 ASN A 181 TYR A 184 5 4 HELIX 13 AB4 GLY A 192 SER A 201 1 10 HELIX 14 AB5 GLY A 202 GLN A 210 1 9 HELIX 15 AB6 ASP A 228 LYS A 239 1 12 HELIX 16 AB7 ALA A 286 CYS A 288 5 3 HELIX 17 AB8 PRO A 289 ALA A 291 5 3 HELIX 18 AB9 ASP A 292 ASP A 298 1 7 HELIX 19 AC1 LEU A 314 GLU A 323 1 10 HELIX 20 AC2 ALA A 355 MET A 362 5 8 HELIX 21 AC3 PRO A 372 PHE A 376 5 5 HELIX 22 AC4 THR A 381 SER A 390 1 10 HELIX 23 AC5 ASP A 405 HIS A 408 5 4 HELIX 24 AC6 ASP A 417 LYS A 422 1 6 HELIX 25 AC7 MET A 423 VAL A 431 1 9 SHEET 1 AA1 8 ASP A 59 ALA A 60 0 SHEET 2 AA1 8 SER A 367 VAL A 370 1 O VAL A 370 N ASP A 59 SHEET 3 AA1 8 PHE A 242 ARG A 248 1 N VAL A 246 O ILE A 369 SHEET 4 AA1 8 PHE A 304 ARG A 313 -1 O PHE A 305 N CYS A 247 SHEET 5 AA1 8 TYR A 214 ASN A 219 -1 N VAL A 217 O LEU A 310 SHEET 6 AA1 8 THR A 76 ASN A 82 1 N VAL A 77 O PHE A 216 SHEET 7 AA1 8 ARG A 126 ASP A 131 1 O ARG A 126 N VAL A 78 SHEET 8 AA1 8 GLU A 159 MET A 161 1 O LEU A 160 N LEU A 129 SHEET 1 AA2 2 GLU A 99 LYS A 101 0 SHEET 2 AA2 2 LYS A 104 THR A 105 -1 O LYS A 104 N VAL A 100 SHEET 1 AA3 2 VAL A 165 PRO A 166 0 SHEET 2 AA3 2 TRP A 186 ALA A 187 -1 O ALA A 187 N VAL A 165 SHEET 1 AA4 3 ILE A 168 LEU A 169 0 SHEET 2 AA4 3 LYS A 348 GLU A 353 -1 O TYR A 350 N ILE A 168 SHEET 3 AA4 3 ILE A 333 THR A 338 -1 N LYS A 337 O VAL A 349 SHEET 1 AA5 2 GLY A 257 VAL A 266 0 SHEET 2 AA5 2 ALA A 275 GLU A 284 -1 O VAL A 279 N GLN A 262 SHEET 1 AA6 2 TYR A 393 VAL A 395 0 SHEET 2 AA6 2 LEU A 401 LEU A 403 -1 O VAL A 402 N VAL A 394 SHEET 1 AA7 4 VAL A 413 LEU A 416 0 SHEET 2 AA7 4 SER A 437 LYS A 447 1 O LYS A 442 N VAL A 413 SHEET 3 AA7 4 VAL A 457 GLU A 465 1 O ILE A 464 N LYS A 447 SHEET 4 AA7 4 LYS A 480 ALA A 486 1 O ALA A 486 N THR A 463 SHEET 1 AA8 2 VAL A 450 GLN A 451 0 SHEET 2 AA8 2 PHE A 473 VAL A 474 1 O PHE A 473 N GLN A 451 SSBOND 1 CYS A 92 CYS A 92 1555 3655 2.03 SITE 1 AC1 30 LEU A 81 GLY A 83 GLY A 84 MET A 130 SITE 2 AC1 30 GLN A 162 PRO A 188 GLY A 190 HIS A 191 SITE 3 AC1 30 ASN A 219 GLY A 220 ASP A 221 GLY A 256 SITE 4 AC1 30 GLY A 257 GLU A 284 PHE A 305 ASN A 306 SITE 5 AC1 30 ASN A 308 PHE A 376 LYS A 380 HOH A 774 SITE 6 AC1 30 HOH A 791 HOH A 811 HOH A 829 HOH A 836 SITE 7 AC1 30 HOH A 847 HOH A 858 HOH A 867 HOH A 916 SITE 8 AC1 30 HOH A 933 HOH A 991 SITE 1 AC2 6 THR A 381 CYS A 382 ALA A 383 LEU A 416 SITE 2 AC2 6 SER A 418 HOH A 778 SITE 1 AC3 6 GLN A 74 GLN A 210 GLY A 211 TYR A 212 SITE 2 AC3 6 HOH A 711 HOH A 745 SITE 1 AC4 4 ASP A 93 SER A 138 SER A 141 PHE A 142 SITE 1 AC5 6 LEU A 198 TYR A 199 GLY A 202 LEU A 204 SITE 2 AC5 6 GLN A 205 LEU A 318 SITE 1 AC6 4 THR A 65 GLN A 170 PRO A 347 LYS A 348 SITE 1 AC7 9 GLY A 224 ARG A 373 TRP A 374 PHE A 376 SITE 2 AC7 9 ALA A 377 TYR A 393 LEU A 401 VAL A 402 SITE 3 AC7 9 LEU A 403 SITE 1 AC8 7 ALA A 34 GLN A 35 LEU A 330 VAL A 332 SITE 2 AC8 7 HOH A 937 HOH A 977 HOH A1087 SITE 1 AC9 8 THR A 250 GLU A 251 SER A 252 HIS A 410 SITE 2 AC9 8 PRO A 411 VAL A 413 LYS A 442 HOH A 704 SITE 1 AD1 2 TRP A 374 ARG A 400 SITE 1 AD2 7 CYS A 28 THR A 31 VAL A 165 ASP A 193 SITE 2 AD2 7 THR A 196 HOH A 787 HOH A 808 SITE 1 AD3 5 SER A 75 ARG A 213 GLU A 236 HOH A 701 SITE 2 AD3 5 HOH A 761 SITE 1 AD4 3 LEU A 8 ARG A 30 HOH A 882 SITE 1 AD5 2 GLN A 210 HOH A 711 CRYST1 79.500 89.800 137.300 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012579 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007283 0.00000