HEADER MOTOR PROTEIN 15-MAY-17 5O01 TITLE CRYSTAL STRUCTURE OF BTUBC (BKLC) FROM P. VANNEERVENII COMPND MOL_ID: 1; COMPND 2 MOLECULE: BKLC (BACTERIAL KINESIN-LIGHT CHAIN-LIKE); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROSTHECOBACTER VANNEERVENII; SOURCE 3 ORGANISM_TAXID: 48466; SOURCE 4 GENE: BKLC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIAL CYTOSKELETON, MINI MICROTUBULES, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LOWE,X.DENG REVDAT 3 25-OCT-17 5O01 1 SOURCE REVDAT 2 26-JUL-17 5O01 1 REVDAT 1 19-JUL-17 5O01 0 JRNL AUTH X.DENG,G.FINK,T.A.M.BHARAT,S.HE,D.KUREISAITE-CIZIENE,J.LOWE JRNL TITL FOUR-STRANDED MINI MICROTUBULES FORMED BY PROSTHECOBACTER JRNL TITL 2 BTUBAB SHOW DYNAMIC INSTABILITY. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E5950 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28673988 JRNL DOI 10.1073/PNAS.1705062114 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 21275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4063 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.452 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.269 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.997 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4127 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5551 ; 1.716 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 5.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;37.909 ;23.182 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 747 ;19.060 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;20.195 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3172 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2030 ; 4.391 ; 4.786 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2534 ; 6.583 ; 7.168 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2097 ; 6.068 ; 5.268 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 17265 ;12.371 ;88.727 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 255 B 2 255 16042 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21275 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM CHES/NAOH, 500 MM NACL, 1 MM REMARK 280 TCEP, 5% GLYCEROL, PH 9.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 59.86700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.56423 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 79.78867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 59.86700 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 34.56423 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 79.78867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 59.86700 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 34.56423 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.78867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 59.86700 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 34.56423 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 79.78867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 59.86700 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 34.56423 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 79.78867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 59.86700 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 34.56423 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 79.78867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.12846 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 159.57733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 69.12846 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 159.57733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 69.12846 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 159.57733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 69.12846 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 159.57733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 69.12846 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 159.57733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 69.12846 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 159.57733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 256 REMARK 465 MET B 1 REMARK 465 LEU B 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 49 O HOH B 301 2.00 REMARK 500 O ILE A 28 O HOH A 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 136 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 29 41.07 -79.71 REMARK 500 ASN A 109 -148.54 -108.20 REMARK 500 GLU A 112 -53.50 -22.75 REMARK 500 GLU A 113 50.73 -107.90 REMARK 500 MET A 174 27.48 48.35 REMARK 500 GLU A 195 -178.97 -56.16 REMARK 500 ASP A 219 75.54 -109.12 REMARK 500 ARG B 29 24.72 -72.68 REMARK 500 ARG B 91 76.13 -100.23 REMARK 500 GLU B 113 36.66 -96.50 REMARK 500 MET B 174 27.21 48.12 REMARK 500 LEU B 193 89.35 -150.27 REMARK 500 ASP B 219 75.28 -110.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 110 LEU A 111 -139.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 5O01 A 1 256 UNP A8Y5U5 A8Y5U5_9BACT 1 256 DBREF 5O01 B 1 256 UNP A8Y5U5 A8Y5U5_9BACT 1 256 SEQRES 1 A 256 MET ASP THR ALA LEU GLU ARG GLN ILE ALA SER ALA SER SEQRES 2 A 256 ARG SER VAL GLU GLU ALA ARG ARG LEU ALA TYR HIS ASP SEQRES 3 A 256 PRO ILE ARG VAL GLY ALA LEU VAL GLU GLN ILE SER VAL SEQRES 4 A 256 LEU ALA ASP LEU ARG GLN LYS GLU GLY ASP PHE ARG LYS SEQRES 5 A 256 ALA GLU SER LEU TYR ARG GLU ALA LEU PHE ARG ALA GLN SEQRES 6 A 256 GLU LEU ARG LYS GLN ASP PRO ASP LEU LEU THR GLY ILE SEQRES 7 A 256 TYR SER LEU LEU ALA HIS LEU TYR ASP ARG TRP GLY ARG SEQRES 8 A 256 MET ASP LYS ALA ALA GLU PHE TYR GLU LEU ALA LEU LYS SEQRES 9 A 256 ILE SER ALA GLU ASN GLY LEU GLU GLU SER ASP LYS VAL SEQRES 10 A 256 ALA THR ILE LYS ASN ASN LEU ALA MET ILE PHE LYS GLN SEQRES 11 A 256 LEU ARG LYS PHE GLU ARG ALA GLU GLY TYR TYR CYS GLU SEQRES 12 A 256 ALA LEU GLU THR PHE GLN ARG LEU ASP GLY GLU GLN SER SEQRES 13 A 256 ALA ARG VAL ALA SER VAL TYR ASN ASN LEU GLY VAL LEU SEQRES 14 A 256 TYR TYR SER HIS MET ASP VAL ASP ARG ALA GLN VAL MET SEQRES 15 A 256 HIS GLU ARG ALA LEU ALA ILE ARG GLN ASN LEU HIS GLU SEQRES 16 A 256 GLY GLN MET ASP PRO ALA ASP LEU SER GLN THR PHE ILE SEQRES 17 A 256 ASN LEU GLY ALA VAL TYR LYS ALA ALA GLY ASP PHE GLN SEQRES 18 A 256 LYS ALA GLU ALA CYS VAL ASP ARG ALA LYS ARG ILE ARG SEQRES 19 A 256 ALA ALA MET ASN GLY TYR HIS PRO ASN PRO ARG ARG SER SEQRES 20 A 256 ALA SER LEU LEU ILE ASP LYS SER LEU SEQRES 1 B 256 MET ASP THR ALA LEU GLU ARG GLN ILE ALA SER ALA SER SEQRES 2 B 256 ARG SER VAL GLU GLU ALA ARG ARG LEU ALA TYR HIS ASP SEQRES 3 B 256 PRO ILE ARG VAL GLY ALA LEU VAL GLU GLN ILE SER VAL SEQRES 4 B 256 LEU ALA ASP LEU ARG GLN LYS GLU GLY ASP PHE ARG LYS SEQRES 5 B 256 ALA GLU SER LEU TYR ARG GLU ALA LEU PHE ARG ALA GLN SEQRES 6 B 256 GLU LEU ARG LYS GLN ASP PRO ASP LEU LEU THR GLY ILE SEQRES 7 B 256 TYR SER LEU LEU ALA HIS LEU TYR ASP ARG TRP GLY ARG SEQRES 8 B 256 MET ASP LYS ALA ALA GLU PHE TYR GLU LEU ALA LEU LYS SEQRES 9 B 256 ILE SER ALA GLU ASN GLY LEU GLU GLU SER ASP LYS VAL SEQRES 10 B 256 ALA THR ILE LYS ASN ASN LEU ALA MET ILE PHE LYS GLN SEQRES 11 B 256 LEU ARG LYS PHE GLU ARG ALA GLU GLY TYR TYR CYS GLU SEQRES 12 B 256 ALA LEU GLU THR PHE GLN ARG LEU ASP GLY GLU GLN SER SEQRES 13 B 256 ALA ARG VAL ALA SER VAL TYR ASN ASN LEU GLY VAL LEU SEQRES 14 B 256 TYR TYR SER HIS MET ASP VAL ASP ARG ALA GLN VAL MET SEQRES 15 B 256 HIS GLU ARG ALA LEU ALA ILE ARG GLN ASN LEU HIS GLU SEQRES 16 B 256 GLY GLN MET ASP PRO ALA ASP LEU SER GLN THR PHE ILE SEQRES 17 B 256 ASN LEU GLY ALA VAL TYR LYS ALA ALA GLY ASP PHE GLN SEQRES 18 B 256 LYS ALA GLU ALA CYS VAL ASP ARG ALA LYS ARG ILE ARG SEQRES 19 B 256 ALA ALA MET ASN GLY TYR HIS PRO ASN PRO ARG ARG SER SEQRES 20 B 256 ALA SER LEU LEU ILE ASP LYS SER LEU FORMUL 3 HOH *92(H2 O) HELIX 1 AA1 THR A 3 ASP A 26 1 24 HELIX 2 AA2 ARG A 29 GLU A 47 1 19 HELIX 3 AA3 ASP A 49 LEU A 67 1 19 HELIX 4 AA4 ASP A 71 GLY A 90 1 20 HELIX 5 AA5 ARG A 91 ASN A 109 1 19 HELIX 6 AA6 SER A 114 LEU A 131 1 18 HELIX 7 AA7 LYS A 133 ASP A 152 1 20 HELIX 8 AA8 SER A 156 HIS A 173 1 18 HELIX 9 AA9 ASP A 175 ASN A 192 1 18 HELIX 10 AB1 ASP A 199 ALA A 217 1 19 HELIX 11 AB2 ASP A 219 MET A 237 1 19 HELIX 12 AB3 THR B 3 ASP B 26 1 24 HELIX 13 AB4 ARG B 29 GLU B 47 1 19 HELIX 14 AB5 ASP B 49 GLU B 66 1 18 HELIX 15 AB6 ASP B 71 GLY B 90 1 20 HELIX 16 AB7 ARG B 91 ASN B 109 1 19 HELIX 17 AB8 GLY B 110 GLU B 113 5 4 HELIX 18 AB9 SER B 114 LEU B 131 1 18 HELIX 19 AC1 LYS B 133 GLY B 153 1 21 HELIX 20 AC2 SER B 156 HIS B 173 1 18 HELIX 21 AC3 ASP B 175 ASN B 192 1 18 HELIX 22 AC4 ASP B 199 ALA B 217 1 19 HELIX 23 AC5 ASP B 219 MET B 237 1 19 CRYST1 119.734 119.734 239.366 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008352 0.004822 0.000000 0.00000 SCALE2 0.000000 0.009644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004178 0.00000