HEADER TRANSFERASE 16-MAY-17 5O08 TITLE CRYSTAL STRUCTURE OF PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM TITLE 2 MYCOBACTERIUM ABCESSUS IN COMPLEX WITH DEPHOSPHO-COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DEPHOSPHO-COA PYROPHOSPHORYLASE,PANTETHEINE-PHOSPHATE COMPND 5 ADENYLYLTRANSFERASE,PPAT; COMPND 6 EC: 2.7.7.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS (STRAIN ATCC 19977 / SOURCE 3 DSM 44196 / CIP 104536 / JCM 13569 / NCTC 13031 / TMC 1543); SOURCE 4 ORGANISM_TAXID: 561007; SOURCE 5 GENE: COAD, MAB_3259C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COENZYME A BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,S.Y.KIM,V.MENDES,M.BLASZCZYK,T.L.BLUNDELL REVDAT 5 17-JAN-24 5O08 1 REMARK REVDAT 4 23-AUG-17 5O08 1 JRNL REVDAT 3 26-JUL-17 5O08 1 REVDAT 2 05-JUL-17 5O08 1 JRNL REVDAT 1 28-JUN-17 5O08 0 JRNL AUTH S.E.THOMAS,V.MENDES,S.Y.KIM,S.MALHOTRA,B.OCHOA-MONTANO, JRNL AUTH 2 M.BLASZCZYK,T.L.BLUNDELL JRNL TITL STRUCTURAL BIOLOGY AND THE DESIGN OF NEW THERAPEUTICS: FROM JRNL TITL 2 HIV AND CANCER TO MYCOBACTERIAL INFECTIONS: A PAPER JRNL TITL 3 DEDICATED TO JOHN KENDREW. JRNL REF J. MOL. BIOL. V. 429 2677 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28648615 JRNL DOI 10.1016/J.JMB.2017.06.014 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 78678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 4035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3156 - 4.7674 1.00 2771 153 0.1751 0.2005 REMARK 3 2 4.7674 - 3.7847 1.00 2650 174 0.1510 0.1860 REMARK 3 3 3.7847 - 3.3065 1.00 2648 131 0.1780 0.1929 REMARK 3 4 3.3065 - 3.0043 1.00 2672 131 0.1972 0.2416 REMARK 3 5 3.0043 - 2.7890 1.00 2614 143 0.2019 0.2065 REMARK 3 6 2.7890 - 2.6246 1.00 2617 132 0.2066 0.2667 REMARK 3 7 2.6246 - 2.4932 1.00 2631 140 0.2097 0.2007 REMARK 3 8 2.4932 - 2.3846 1.00 2648 122 0.2080 0.2456 REMARK 3 9 2.3846 - 2.2928 1.00 2589 149 0.2105 0.2216 REMARK 3 10 2.2928 - 2.2137 0.85 2190 131 0.2057 0.2644 REMARK 3 11 2.2137 - 2.1445 1.00 2612 145 0.2117 0.2658 REMARK 3 12 2.1445 - 2.0832 1.00 2593 145 0.2126 0.2189 REMARK 3 13 2.0832 - 2.0284 0.78 2048 104 0.2285 0.3011 REMARK 3 14 2.0284 - 1.9789 1.00 2580 149 0.2186 0.2992 REMARK 3 15 1.9789 - 1.9339 1.00 2620 134 0.2242 0.2413 REMARK 3 16 1.9339 - 1.8927 1.00 2565 159 0.2244 0.2506 REMARK 3 17 1.8927 - 1.8549 1.00 2602 117 0.2354 0.2834 REMARK 3 18 1.8549 - 1.8199 1.00 2614 126 0.2309 0.2634 REMARK 3 19 1.8199 - 1.7874 1.00 2592 141 0.2300 0.3017 REMARK 3 20 1.7874 - 1.7571 1.00 2591 133 0.2359 0.2598 REMARK 3 21 1.7571 - 1.7287 1.00 2565 158 0.2399 0.3241 REMARK 3 22 1.7287 - 1.7021 1.00 2611 145 0.2373 0.2560 REMARK 3 23 1.7021 - 1.6771 1.00 2588 137 0.2356 0.2372 REMARK 3 24 1.6771 - 1.6535 1.00 2522 144 0.2508 0.2586 REMARK 3 25 1.6535 - 1.6311 1.00 2616 147 0.2569 0.2817 REMARK 3 26 1.6311 - 1.6099 1.00 2585 137 0.2627 0.2972 REMARK 3 27 1.6099 - 1.5898 1.00 2545 158 0.2655 0.2854 REMARK 3 28 1.5898 - 1.5707 1.00 2623 121 0.2699 0.2963 REMARK 3 29 1.5707 - 1.5524 1.00 2541 129 0.2853 0.2941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3814 REMARK 3 ANGLE : 1.101 5193 REMARK 3 CHIRALITY : 0.040 603 REMARK 3 PLANARITY : 0.005 660 REMARK 3 DIHEDRAL : 12.642 1355 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78718 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 64.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5O06 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM SODIUM FLUORIDE 0.1M BIS-TRIS REMARK 280 PROPANE PH 6.5 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.09450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.09450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.02300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.41400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.02300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.41400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.09450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.02300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.41400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.09450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.02300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.41400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.09450 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 352 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 343 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 GLN A 161 REMARK 465 SER B 0 REMARK 465 GLY B 158 REMARK 465 GLN B 159 REMARK 465 ALA B 160 REMARK 465 GLN B 161 REMARK 465 GLY C 158 REMARK 465 GLN C 159 REMARK 465 ALA C 160 REMARK 465 GLN C 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CE REMARK 470 ASP A 60 CG OD1 OD2 REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 ILE B 37 CD1 REMARK 470 GLN B 70 OE1 NE2 REMARK 470 GLN B 150 CG CD OE1 NE2 REMARK 470 ARG B 157 NE CZ NH1 NH2 REMARK 470 GLU C 30 CD OE1 OE2 REMARK 470 GLU C 52 CG CD OE1 OE2 REMARK 470 ASP C 60 CG OD1 OD2 REMARK 470 GLN C 150 CG CD OE1 NE2 REMARK 470 ARG C 151 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 157 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 380 O HOH C 402 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 83 18.05 -143.47 REMARK 500 ALA A 109 -1.08 -146.59 REMARK 500 PRO B 39 -6.42 -46.72 REMARK 500 ASN B 83 19.26 -144.99 REMARK 500 ALA B 109 -5.07 -147.78 REMARK 500 MET C 44 -61.85 -99.41 REMARK 500 ASN C 83 23.42 -148.18 REMARK 500 ALA C 109 -9.87 -143.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COD C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 202 DBREF 5O08 A 1 161 UNP B1MDL6 COAD_MYCA9 1 161 DBREF 5O08 B 1 161 UNP B1MDL6 COAD_MYCA9 1 161 DBREF 5O08 C 1 161 UNP B1MDL6 COAD_MYCA9 1 161 SEQADV 5O08 SER A 0 UNP B1MDL6 EXPRESSION TAG SEQADV 5O08 SER B 0 UNP B1MDL6 EXPRESSION TAG SEQADV 5O08 SER C 0 UNP B1MDL6 EXPRESSION TAG SEQRES 1 A 162 SER MET THR GLY ALA VAL CYS PRO GLY SER PHE ASP PRO SEQRES 2 A 162 VAL THR LEU GLY HIS LEU ASP VAL PHE GLU ARG ALA ALA SEQRES 3 A 162 ALA GLN PHE ASP GLU VAL ILE VAL ALA VAL LEU ILE ASN SEQRES 4 A 162 PRO ASN LYS ALA GLY MET PHE THR VAL ASP GLU ARG ILE SEQRES 5 A 162 GLU MET ILE ARG GLU SER THR ALA ASP LEU PRO ASN LEU SEQRES 6 A 162 ARG VAL GLU SER GLY GLN GLY LEU LEU VAL ASP PHE VAL SEQRES 7 A 162 ARG GLU ARG GLY LEU ASN ALA ILE VAL LYS GLY LEU ARG SEQRES 8 A 162 THR GLY THR ASP PHE GLU TYR GLU LEU GLN MET ALA GLN SEQRES 9 A 162 MET ASN LYS HIS ILE ALA GLY VAL ASP THR PHE PHE VAL SEQRES 10 A 162 ALA THR ALA PRO ALA TYR SER PHE VAL SER SER SER LEU SEQRES 11 A 162 ALA LYS GLU VAL ALA THR TYR GLY GLY ASP VAL SER ALA SEQRES 12 A 162 LEU LEU PRO ALA SER VAL HIS GLN ARG LEU LEU GLY LYS SEQRES 13 A 162 LEU ARG GLY GLN ALA GLN SEQRES 1 B 162 SER MET THR GLY ALA VAL CYS PRO GLY SER PHE ASP PRO SEQRES 2 B 162 VAL THR LEU GLY HIS LEU ASP VAL PHE GLU ARG ALA ALA SEQRES 3 B 162 ALA GLN PHE ASP GLU VAL ILE VAL ALA VAL LEU ILE ASN SEQRES 4 B 162 PRO ASN LYS ALA GLY MET PHE THR VAL ASP GLU ARG ILE SEQRES 5 B 162 GLU MET ILE ARG GLU SER THR ALA ASP LEU PRO ASN LEU SEQRES 6 B 162 ARG VAL GLU SER GLY GLN GLY LEU LEU VAL ASP PHE VAL SEQRES 7 B 162 ARG GLU ARG GLY LEU ASN ALA ILE VAL LYS GLY LEU ARG SEQRES 8 B 162 THR GLY THR ASP PHE GLU TYR GLU LEU GLN MET ALA GLN SEQRES 9 B 162 MET ASN LYS HIS ILE ALA GLY VAL ASP THR PHE PHE VAL SEQRES 10 B 162 ALA THR ALA PRO ALA TYR SER PHE VAL SER SER SER LEU SEQRES 11 B 162 ALA LYS GLU VAL ALA THR TYR GLY GLY ASP VAL SER ALA SEQRES 12 B 162 LEU LEU PRO ALA SER VAL HIS GLN ARG LEU LEU GLY LYS SEQRES 13 B 162 LEU ARG GLY GLN ALA GLN SEQRES 1 C 162 SER MET THR GLY ALA VAL CYS PRO GLY SER PHE ASP PRO SEQRES 2 C 162 VAL THR LEU GLY HIS LEU ASP VAL PHE GLU ARG ALA ALA SEQRES 3 C 162 ALA GLN PHE ASP GLU VAL ILE VAL ALA VAL LEU ILE ASN SEQRES 4 C 162 PRO ASN LYS ALA GLY MET PHE THR VAL ASP GLU ARG ILE SEQRES 5 C 162 GLU MET ILE ARG GLU SER THR ALA ASP LEU PRO ASN LEU SEQRES 6 C 162 ARG VAL GLU SER GLY GLN GLY LEU LEU VAL ASP PHE VAL SEQRES 7 C 162 ARG GLU ARG GLY LEU ASN ALA ILE VAL LYS GLY LEU ARG SEQRES 8 C 162 THR GLY THR ASP PHE GLU TYR GLU LEU GLN MET ALA GLN SEQRES 9 C 162 MET ASN LYS HIS ILE ALA GLY VAL ASP THR PHE PHE VAL SEQRES 10 C 162 ALA THR ALA PRO ALA TYR SER PHE VAL SER SER SER LEU SEQRES 11 C 162 ALA LYS GLU VAL ALA THR TYR GLY GLY ASP VAL SER ALA SEQRES 12 C 162 LEU LEU PRO ALA SER VAL HIS GLN ARG LEU LEU GLY LYS SEQRES 13 C 162 LEU ARG GLY GLN ALA GLN HET COD A 201 44 HET EDO A 202 4 HET EDO A 203 4 HET COD B 201 44 HET EDO B 202 4 HET COD C 201 44 HET EDO C 202 4 HETNAM COD DEPHOSPHO COENZYME A HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 COD 3(C21 H35 N7 O13 P2 S) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 11 HOH *356(H2 O) HELIX 1 AA1 THR A 14 ALA A 26 1 13 HELIX 2 AA2 THR A 46 THR A 58 1 13 HELIX 3 AA3 LEU A 72 ARG A 80 1 9 HELIX 4 AA4 THR A 91 GLY A 110 1 20 HELIX 5 AA5 ALA A 119 SER A 123 5 5 HELIX 6 AA6 SER A 126 TYR A 136 1 11 HELIX 7 AA7 PRO A 145 GLY A 158 1 14 HELIX 8 AA8 THR B 14 PHE B 28 1 15 HELIX 9 AA9 THR B 46 THR B 58 1 13 HELIX 10 AB1 LEU B 72 ARG B 80 1 9 HELIX 11 AB2 THR B 91 GLY B 110 1 20 HELIX 12 AB3 ALA B 119 SER B 123 5 5 HELIX 13 AB4 SER B 126 TYR B 136 1 11 HELIX 14 AB5 PRO B 145 ARG B 157 1 13 HELIX 15 AB6 THR C 14 PHE C 28 1 15 HELIX 16 AB7 THR C 46 THR C 58 1 13 HELIX 17 AB8 LEU C 72 ARG C 80 1 9 HELIX 18 AB9 THR C 91 GLY C 110 1 20 HELIX 19 AC1 ALA C 119 SER C 123 5 5 HELIX 20 AC2 SER C 126 TYR C 136 1 11 HELIX 21 AC3 PRO C 145 ARG C 157 1 13 SHEET 1 AA1 3 GLY A 3 GLY A 8 0 SHEET 2 AA1 3 GLU A 30 VAL A 35 1 O ILE A 32 N CYS A 6 SHEET 3 AA1 3 LEU A 64 SER A 68 1 O ARG A 65 N VAL A 33 SHEET 1 AA2 2 ALA A 84 LEU A 89 0 SHEET 2 AA2 2 ASP A 112 ALA A 117 1 O PHE A 114 N ILE A 85 SHEET 1 AA3 3 GLY B 3 GLY B 8 0 SHEET 2 AA3 3 GLU B 30 VAL B 35 1 O ILE B 32 N CYS B 6 SHEET 3 AA3 3 LEU B 64 SER B 68 1 O ARG B 65 N VAL B 33 SHEET 1 AA4 2 ALA B 84 LEU B 89 0 SHEET 2 AA4 2 ASP B 112 ALA B 117 1 O PHE B 114 N ILE B 85 SHEET 1 AA5 3 GLY C 3 GLY C 8 0 SHEET 2 AA5 3 GLU C 30 VAL C 35 1 O ILE C 32 N CYS C 6 SHEET 3 AA5 3 LEU C 64 SER C 68 1 O ARG C 65 N VAL C 33 SHEET 1 AA6 2 ALA C 84 LEU C 89 0 SHEET 2 AA6 2 ASP C 112 ALA C 117 1 O PHE C 114 N ILE C 85 CISPEP 1 ASP A 11 PRO A 12 0 -1.36 CISPEP 2 ASP B 11 PRO B 12 0 -0.21 CISPEP 3 ASP C 11 PRO C 12 0 0.55 SITE 1 AC1 30 GLY A 8 SER A 9 PHE A 10 GLY A 16 SITE 2 AC1 30 HIS A 17 VAL A 20 ASN A 38 LYS A 41 SITE 3 AC1 30 LEU A 72 LEU A 73 LYS A 87 GLY A 88 SITE 4 AC1 30 ARG A 90 TYR A 97 GLU A 98 ASN A 105 SITE 5 AC1 30 THR A 118 TYR A 122 VAL A 125 HOH A 322 SITE 6 AC1 30 HOH A 331 HOH A 339 HOH A 341 HOH A 346 SITE 7 AC1 30 HOH A 350 HOH A 360 HOH A 361 HOH A 366 SITE 8 AC1 30 GLU C 132 EDO C 202 SITE 1 AC2 7 SER A 9 LEU A 36 ILE A 37 ASN A 38 SITE 2 AC2 7 LYS A 41 GLY A 43 ARG A 50 SITE 1 AC3 4 ALA A 121 PHE A 124 HOH A 368 HIS B 107 SITE 1 AC4 31 GLU A 132 HOH A 313 GLY B 8 SER B 9 SITE 2 AC4 31 PHE B 10 GLY B 16 HIS B 17 VAL B 20 SITE 3 AC4 31 ASN B 38 GLY B 71 LEU B 72 LEU B 73 SITE 4 AC4 31 LYS B 87 GLY B 88 ARG B 90 TYR B 97 SITE 5 AC4 31 GLU B 98 ASN B 105 THR B 118 TYR B 122 SITE 6 AC4 31 HOH B 323 HOH B 328 HOH B 348 HOH B 350 SITE 7 AC4 31 HOH B 351 HOH B 358 HOH B 359 HOH B 360 SITE 8 AC4 31 HOH B 364 HOH B 373 HOH B 379 SITE 1 AC5 5 GLU B 132 ASN C 38 ASN C 40 TYR C 97 SITE 2 AC5 5 COD C 201 SITE 1 AC6 32 GLU B 132 EDO B 202 GLY C 8 SER C 9 SITE 2 AC6 32 PHE C 10 GLY C 16 HIS C 17 VAL C 20 SITE 3 AC6 32 ASN C 38 LYS C 41 GLY C 71 LEU C 72 SITE 4 AC6 32 LEU C 73 LYS C 87 GLY C 88 ARG C 90 SITE 5 AC6 32 TYR C 97 GLU C 98 ASN C 105 THR C 118 SITE 6 AC6 32 TYR C 122 VAL C 125 HOH C 324 HOH C 326 SITE 7 AC6 32 HOH C 327 HOH C 341 HOH C 345 HOH C 352 SITE 8 AC6 32 HOH C 357 HOH C 358 HOH C 359 HOH C 372 SITE 1 AC7 7 ASN A 38 PRO A 39 ASN A 40 TYR A 97 SITE 2 AC7 7 COD A 201 HOH A 359 GLU C 132 CRYST1 76.046 124.828 116.189 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013150 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008607 0.00000