HEADER SIGNALING PROTEIN 16-MAY-17 5O0K TITLE DEGLYCOSYLATED NOGO RECEPTOR WITH NATIVE DISULFIDE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULON-4 RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NOGO RECEPTOR,NGR,NOGO-66 RECEPTOR,NOGO66 RECEPTOR-1,NGR1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RTN4R, NGR1, NOGOR; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 EXPRESSION_SYSTEM_CELL: HEK293; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PUPE; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PUPE107.03 KEYWDS NERVOUS SYSTEM, SIGNALING, LEUCINE-RICH REPEAT DOMAIN, DISULFIDE KEYWDS 2 STRUCTURE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.PRONKER,B.J.C.JANSSEN REVDAT 5 17-JAN-24 5O0K 1 HETSYN REVDAT 4 29-JUL-20 5O0K 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 15-NOV-17 5O0K 1 JRNL REVDAT 2 08-NOV-17 5O0K 1 JRNL REVDAT 1 18-OCT-17 5O0K 0 JRNL AUTH M.F.PRONKER,R.P.TAS,H.C.VLIEG,B.J.C.JANSSEN JRNL TITL NOGO RECEPTOR CRYSTAL STRUCTURES WITH A NATIVE DISULFIDE JRNL TITL 2 PATTERN SUGGEST A NOVEL MODE OF SELF-INTERACTION. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 860 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29095159 JRNL DOI 10.1107/S2059798317013791 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 31191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7905 - 5.1128 0.97 2770 143 0.1544 0.2103 REMARK 3 2 5.1128 - 4.0591 0.98 2753 128 0.1316 0.1631 REMARK 3 3 4.0591 - 3.5463 0.98 2680 133 0.1479 0.1882 REMARK 3 4 3.5463 - 3.2221 0.98 2703 135 0.1803 0.2302 REMARK 3 5 3.2221 - 2.9912 0.99 2722 145 0.2023 0.2530 REMARK 3 6 2.9912 - 2.8149 0.99 2667 137 0.2110 0.2767 REMARK 3 7 2.8149 - 2.6740 0.98 2712 128 0.2030 0.2924 REMARK 3 8 2.6740 - 2.5576 0.98 2657 142 0.2245 0.3039 REMARK 3 9 2.5576 - 2.4591 0.99 2662 143 0.2345 0.2815 REMARK 3 10 2.4591 - 2.3743 0.98 2702 146 0.2516 0.3251 REMARK 3 11 2.3743 - 2.3000 0.98 2646 137 0.2654 0.3451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4833 REMARK 3 ANGLE : 0.650 6567 REMARK 3 CHIRALITY : 0.025 744 REMARK 3 PLANARITY : 0.003 854 REMARK 3 DIHEDRAL : 11.410 1760 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2638 33.5515 56.8201 REMARK 3 T TENSOR REMARK 3 T11: 0.1642 T22: 0.3848 REMARK 3 T33: 0.3358 T12: 0.0276 REMARK 3 T13: 0.0489 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 4.5616 L22: 4.8546 REMARK 3 L33: 3.5127 L12: 1.4333 REMARK 3 L13: 0.8755 L23: 0.9563 REMARK 3 S TENSOR REMARK 3 S11: 0.1898 S12: -0.2912 S13: 0.5487 REMARK 3 S21: 0.3512 S22: -0.0864 S23: 0.2975 REMARK 3 S31: -0.0398 S32: -0.5807 S33: -0.0720 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0131 16.9262 40.9013 REMARK 3 T TENSOR REMARK 3 T11: 0.1636 T22: 0.2277 REMARK 3 T33: 0.1997 T12: -0.0619 REMARK 3 T13: -0.0399 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 2.8668 L22: 2.1401 REMARK 3 L33: 1.4203 L12: -1.4957 REMARK 3 L13: -0.4197 L23: 0.7354 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: 0.1098 S13: -0.0127 REMARK 3 S21: -0.0593 S22: 0.0072 S23: -0.0165 REMARK 3 S31: 0.0178 S32: -0.1076 S33: -0.0606 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2641 -2.6389 38.2916 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.2507 REMARK 3 T33: 0.2560 T12: 0.0292 REMARK 3 T13: -0.0580 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 5.4541 L22: 7.7847 REMARK 3 L33: 5.1464 L12: 0.5643 REMARK 3 L13: -1.3943 L23: -0.6676 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.4553 S13: -0.2939 REMARK 3 S21: -0.2857 S22: 0.0417 S23: 0.0467 REMARK 3 S31: 0.5643 S32: 0.1991 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8940 44.8426 26.1465 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.2857 REMARK 3 T33: 0.1918 T12: -0.0329 REMARK 3 T13: -0.0209 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 5.7577 L22: 6.2181 REMARK 3 L33: 8.2654 L12: -1.0091 REMARK 3 L13: 0.8400 L23: -3.2499 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: -0.1744 S13: 0.1471 REMARK 3 S21: 0.1334 S22: -0.2029 S23: -0.2672 REMARK 3 S31: -0.1439 S32: 0.6390 S33: 0.0923 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3584 37.8926 25.5682 REMARK 3 T TENSOR REMARK 3 T11: 0.2735 T22: 0.2439 REMARK 3 T33: 0.1166 T12: -0.0036 REMARK 3 T13: -0.0234 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 3.8266 L22: 5.6936 REMARK 3 L33: 2.6032 L12: 0.1186 REMARK 3 L13: -0.0321 L23: 0.1065 REMARK 3 S TENSOR REMARK 3 S11: 0.1347 S12: -0.1706 S13: -0.0507 REMARK 3 S21: 0.2808 S22: -0.1357 S23: 0.0757 REMARK 3 S31: 0.2353 S32: 0.1496 S33: -0.0228 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1629 32.7683 22.5034 REMARK 3 T TENSOR REMARK 3 T11: 0.3368 T22: 0.3179 REMARK 3 T33: 0.2282 T12: -0.0939 REMARK 3 T13: -0.0586 T23: -0.0703 REMARK 3 L TENSOR REMARK 3 L11: 3.0385 L22: 4.7344 REMARK 3 L33: 3.6347 L12: -0.5415 REMARK 3 L13: -0.6314 L23: -0.8803 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: -0.1718 S13: 0.1634 REMARK 3 S21: 0.2675 S22: -0.1328 S23: 0.1840 REMARK 3 S31: 0.3236 S32: -0.4920 S33: 0.0447 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4491 27.6851 20.2071 REMARK 3 T TENSOR REMARK 3 T11: 0.3984 T22: 0.2644 REMARK 3 T33: 0.1831 T12: -0.0740 REMARK 3 T13: -0.0056 T23: -0.1094 REMARK 3 L TENSOR REMARK 3 L11: 5.2990 L22: 4.8666 REMARK 3 L33: 4.5175 L12: 0.2946 REMARK 3 L13: -0.6119 L23: -1.4909 REMARK 3 S TENSOR REMARK 3 S11: 0.1566 S12: -0.3275 S13: -0.3542 REMARK 3 S21: 0.5734 S22: -0.2263 S23: 0.2485 REMARK 3 S31: 0.4413 S32: -0.4157 S33: 0.0602 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4992 24.9000 14.8801 REMARK 3 T TENSOR REMARK 3 T11: 0.3591 T22: 0.2538 REMARK 3 T33: 0.1533 T12: -0.0430 REMARK 3 T13: 0.0119 T23: -0.0824 REMARK 3 L TENSOR REMARK 3 L11: 5.5164 L22: 5.0036 REMARK 3 L33: 2.4866 L12: -1.0243 REMARK 3 L13: -0.0577 L23: -1.4423 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.1831 S13: 0.1657 REMARK 3 S21: 0.3080 S22: 0.0659 S23: -0.2091 REMARK 3 S31: 0.3326 S32: -0.1135 S33: -0.0243 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 176 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7483 23.8945 9.2404 REMARK 3 T TENSOR REMARK 3 T11: 0.3408 T22: 0.2671 REMARK 3 T33: 0.1523 T12: -0.0499 REMARK 3 T13: 0.0117 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 4.5209 L22: 9.2135 REMARK 3 L33: 3.3170 L12: -0.6270 REMARK 3 L13: 0.0146 L23: -0.5849 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: -0.0297 S13: -0.0237 REMARK 3 S21: 0.1985 S22: -0.1022 S23: 0.2092 REMARK 3 S31: 0.3374 S32: -0.2941 S33: 0.1646 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4081 19.3922 0.8568 REMARK 3 T TENSOR REMARK 3 T11: 0.2525 T22: 0.2747 REMARK 3 T33: 0.1487 T12: -0.0721 REMARK 3 T13: -0.0164 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 6.0139 L22: 7.0301 REMARK 3 L33: 4.0422 L12: -1.6749 REMARK 3 L13: -0.1358 L23: -0.7488 REMARK 3 S TENSOR REMARK 3 S11: -0.1639 S12: -0.0576 S13: 0.0054 REMARK 3 S21: 0.0678 S22: 0.0584 S23: 0.4147 REMARK 3 S31: 0.1507 S32: -0.5448 S33: 0.0801 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 257 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5502 6.8082 -7.5792 REMARK 3 T TENSOR REMARK 3 T11: 0.3219 T22: 0.3051 REMARK 3 T33: 0.2563 T12: -0.0774 REMARK 3 T13: 0.0200 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 4.5283 L22: 6.2535 REMARK 3 L33: 5.3142 L12: -1.7933 REMARK 3 L13: 0.8348 L23: -0.7986 REMARK 3 S TENSOR REMARK 3 S11: 0.1470 S12: 0.0358 S13: -0.6868 REMARK 3 S21: 0.2010 S22: -0.1055 S23: 0.4700 REMARK 3 S31: 0.4238 S32: -0.3054 S33: -0.0654 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31309 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.783 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13100 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.72400 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OZN REMARK 200 REMARK 200 REMARK: NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CITRIC ACID PH 5.0, 15 % (W/V) REMARK 280 POLYETHYLENE GLYCOL (PEG) 6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.81200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.29300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.81200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.29300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 VAL A 311 REMARK 465 ALA A 312 REMARK 465 SER A 313 REMARK 465 GLY A 314 REMARK 465 PRO A 315 REMARK 465 PHE A 316 REMARK 465 ARG A 317 REMARK 465 PRO A 318 REMARK 465 ILE A 319 REMARK 465 GLN A 320 REMARK 465 THR A 321 REMARK 465 SER A 322 REMARK 465 GLN A 323 REMARK 465 LEU A 324 REMARK 465 THR A 325 REMARK 465 ASP A 326 REMARK 465 GLU A 327 REMARK 465 GLU A 328 REMARK 465 LEU A 329 REMARK 465 LEU A 330 REMARK 465 SER A 331 REMARK 465 GLN A 337 REMARK 465 ALA A 338 REMARK 465 ALA A 339 REMARK 465 ALA A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 GLY B 24 REMARK 465 SER B 25 REMARK 465 VAL B 311 REMARK 465 ALA B 312 REMARK 465 SER B 313 REMARK 465 GLY B 314 REMARK 465 PRO B 315 REMARK 465 PHE B 316 REMARK 465 ARG B 317 REMARK 465 PRO B 318 REMARK 465 ILE B 319 REMARK 465 GLN B 320 REMARK 465 THR B 321 REMARK 465 SER B 322 REMARK 465 GLN B 323 REMARK 465 LEU B 324 REMARK 465 THR B 325 REMARK 465 ASP B 326 REMARK 465 GLU B 327 REMARK 465 GLU B 328 REMARK 465 LEU B 329 REMARK 465 LEU B 330 REMARK 465 SER B 331 REMARK 465 LEU B 332 REMARK 465 GLN B 337 REMARK 465 ALA B 338 REMARK 465 ALA B 339 REMARK 465 ALA B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 -161.21 -102.79 REMARK 500 ASN A 91 -153.77 -114.05 REMARK 500 LEU A 104 59.81 -92.68 REMARK 500 HIS A 119 -50.68 65.81 REMARK 500 ASN A 164 -152.55 -119.05 REMARK 500 ASN A 188 -161.15 -127.51 REMARK 500 ASN A 212 -158.09 -123.26 REMARK 500 LEU A 225 45.85 -99.83 REMARK 500 ASN A 236 -154.85 -125.77 REMARK 500 ASP A 265 -145.83 -127.16 REMARK 500 VAL A 285 78.43 -115.43 REMARK 500 LEU A 306 45.21 -109.80 REMARK 500 ASN B 67 -163.15 -100.57 REMARK 500 ASN B 91 -153.67 -112.72 REMARK 500 LEU B 104 58.95 -92.40 REMARK 500 HIS B 119 -48.53 64.88 REMARK 500 ASN B 164 -150.10 -117.80 REMARK 500 ASN B 188 -160.10 -125.07 REMARK 500 ASN B 212 -153.22 -129.96 REMARK 500 LEU B 225 46.37 -98.11 REMARK 500 ASN B 236 -154.82 -131.32 REMARK 500 ASP B 265 -144.95 -132.59 REMARK 500 VAL B 285 78.82 -115.99 REMARK 500 LYS B 334 -5.04 64.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 5O0K A 27 337 UNP Q99PI8 RTN4R_MOUSE 27 337 DBREF 5O0K B 27 337 UNP Q99PI8 RTN4R_MOUSE 27 337 SEQADV 5O0K GLY A 24 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K SER A 25 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K PRO A 26 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K ALA A 338 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K ALA A 339 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K ALA A 340 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS A 341 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS A 342 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS A 343 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS A 344 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS A 345 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS A 346 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K GLY B 24 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K SER B 25 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K PRO B 26 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K ALA B 338 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K ALA B 339 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K ALA B 340 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS B 341 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS B 342 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS B 343 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS B 344 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS B 345 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0K HIS B 346 UNP Q99PI8 EXPRESSION TAG SEQRES 1 A 323 GLY SER PRO CYS PRO GLY ALA CYS VAL CYS TYR ASN GLU SEQRES 2 A 323 PRO LYS VAL THR THR SER CYS PRO GLN GLN GLY LEU GLN SEQRES 3 A 323 ALA VAL PRO THR GLY ILE PRO ALA SER SER GLN ARG ILE SEQRES 4 A 323 PHE LEU HIS GLY ASN ARG ILE SER HIS VAL PRO ALA ALA SEQRES 5 A 323 SER PHE GLN SER CYS ARG ASN LEU THR ILE LEU TRP LEU SEQRES 6 A 323 HIS SER ASN ALA LEU ALA ARG ILE ASP ALA ALA ALA PHE SEQRES 7 A 323 THR GLY LEU THR LEU LEU GLU GLN LEU ASP LEU SER ASP SEQRES 8 A 323 ASN ALA GLN LEU HIS VAL VAL ASP PRO THR THR PHE HIS SEQRES 9 A 323 GLY LEU GLY HIS LEU HIS THR LEU HIS LEU ASP ARG CYS SEQRES 10 A 323 GLY LEU ARG GLU LEU GLY PRO GLY LEU PHE ARG GLY LEU SEQRES 11 A 323 ALA ALA LEU GLN TYR LEU TYR LEU GLN ASP ASN ASN LEU SEQRES 12 A 323 GLN ALA LEU PRO ASP ASN THR PHE ARG ASP LEU GLY ASN SEQRES 13 A 323 LEU THR HIS LEU PHE LEU HIS GLY ASN ARG ILE PRO SER SEQRES 14 A 323 VAL PRO GLU HIS ALA PHE ARG GLY LEU HIS SER LEU ASP SEQRES 15 A 323 ARG LEU LEU LEU HIS GLN ASN HIS VAL ALA ARG VAL HIS SEQRES 16 A 323 PRO HIS ALA PHE ARG ASP LEU GLY ARG LEU MET THR LEU SEQRES 17 A 323 TYR LEU PHE ALA ASN ASN LEU SER MET LEU PRO ALA GLU SEQRES 18 A 323 VAL LEU MET PRO LEU ARG SER LEU GLN TYR LEU ARG LEU SEQRES 19 A 323 ASN ASP ASN PRO TRP VAL CYS ASP CYS ARG ALA ARG PRO SEQRES 20 A 323 LEU TRP ALA TRP LEU GLN LYS PHE ARG GLY SER SER SER SEQRES 21 A 323 GLU VAL PRO CYS ASN LEU PRO GLN ARG LEU ALA ASP ARG SEQRES 22 A 323 ASP LEU LYS ARG LEU ALA ALA SER ASP LEU GLU GLY CYS SEQRES 23 A 323 ALA VAL ALA SER GLY PRO PHE ARG PRO ILE GLN THR SER SEQRES 24 A 323 GLN LEU THR ASP GLU GLU LEU LEU SER LEU PRO LYS CYS SEQRES 25 A 323 CYS GLN ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 323 GLY SER PRO CYS PRO GLY ALA CYS VAL CYS TYR ASN GLU SEQRES 2 B 323 PRO LYS VAL THR THR SER CYS PRO GLN GLN GLY LEU GLN SEQRES 3 B 323 ALA VAL PRO THR GLY ILE PRO ALA SER SER GLN ARG ILE SEQRES 4 B 323 PHE LEU HIS GLY ASN ARG ILE SER HIS VAL PRO ALA ALA SEQRES 5 B 323 SER PHE GLN SER CYS ARG ASN LEU THR ILE LEU TRP LEU SEQRES 6 B 323 HIS SER ASN ALA LEU ALA ARG ILE ASP ALA ALA ALA PHE SEQRES 7 B 323 THR GLY LEU THR LEU LEU GLU GLN LEU ASP LEU SER ASP SEQRES 8 B 323 ASN ALA GLN LEU HIS VAL VAL ASP PRO THR THR PHE HIS SEQRES 9 B 323 GLY LEU GLY HIS LEU HIS THR LEU HIS LEU ASP ARG CYS SEQRES 10 B 323 GLY LEU ARG GLU LEU GLY PRO GLY LEU PHE ARG GLY LEU SEQRES 11 B 323 ALA ALA LEU GLN TYR LEU TYR LEU GLN ASP ASN ASN LEU SEQRES 12 B 323 GLN ALA LEU PRO ASP ASN THR PHE ARG ASP LEU GLY ASN SEQRES 13 B 323 LEU THR HIS LEU PHE LEU HIS GLY ASN ARG ILE PRO SER SEQRES 14 B 323 VAL PRO GLU HIS ALA PHE ARG GLY LEU HIS SER LEU ASP SEQRES 15 B 323 ARG LEU LEU LEU HIS GLN ASN HIS VAL ALA ARG VAL HIS SEQRES 16 B 323 PRO HIS ALA PHE ARG ASP LEU GLY ARG LEU MET THR LEU SEQRES 17 B 323 TYR LEU PHE ALA ASN ASN LEU SER MET LEU PRO ALA GLU SEQRES 18 B 323 VAL LEU MET PRO LEU ARG SER LEU GLN TYR LEU ARG LEU SEQRES 19 B 323 ASN ASP ASN PRO TRP VAL CYS ASP CYS ARG ALA ARG PRO SEQRES 20 B 323 LEU TRP ALA TRP LEU GLN LYS PHE ARG GLY SER SER SER SEQRES 21 B 323 GLU VAL PRO CYS ASN LEU PRO GLN ARG LEU ALA ASP ARG SEQRES 22 B 323 ASP LEU LYS ARG LEU ALA ALA SER ASP LEU GLU GLY CYS SEQRES 23 B 323 ALA VAL ALA SER GLY PRO PHE ARG PRO ILE GLN THR SER SEQRES 24 B 323 GLN LEU THR ASP GLU GLU LEU LEU SER LEU PRO LYS CYS SEQRES 25 B 323 CYS GLN ALA ALA ALA HIS HIS HIS HIS HIS HIS HET NAG A 401 14 HET NAG A 402 14 HET NAG A 403 14 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET CL A 407 1 HET CL A 408 1 HET NAG B 401 14 HET NAG B 402 14 HET NAG B 403 14 HET GOL B 404 6 HET GOL B 405 6 HET GOL B 406 6 HET GOL B 407 6 HET CL B 408 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 6 GOL 7(C3 H8 O3) FORMUL 9 CL 3(CL 1-) FORMUL 19 HOH *235(H2 O) HELIX 1 AA1 PRO A 242 LEU A 246 5 5 HELIX 2 AA2 ASP A 265 ARG A 267 5 3 HELIX 3 AA3 ALA A 268 PHE A 278 1 11 HELIX 4 AA4 PRO A 290 ALA A 294 5 5 HELIX 5 AA5 ASP A 297 LEU A 301 5 5 HELIX 6 AA6 ALA A 302 GLU A 307 5 6 HELIX 7 AA7 PRO B 242 LEU B 246 5 5 HELIX 8 AA8 ASP B 265 ARG B 267 5 3 HELIX 9 AA9 ALA B 268 PHE B 278 1 11 HELIX 10 AB1 PRO B 290 ALA B 294 5 5 HELIX 11 AB2 ASP B 297 LEU B 301 5 5 HELIX 12 AB3 ALA B 302 GLU B 307 5 6 SHEET 1 AA112 VAL A 32 TYR A 34 0 SHEET 2 AA112 THR A 40 SER A 42 -1 O THR A 40 N TYR A 34 SHEET 3 AA112 ARG A 61 PHE A 63 1 O ARG A 61 N THR A 41 SHEET 4 AA112 ILE A 85 TRP A 87 1 O TRP A 87 N ILE A 62 SHEET 5 AA112 GLN A 109 ASP A 111 1 O ASP A 111 N LEU A 86 SHEET 6 AA112 THR A 134 HIS A 136 1 O HIS A 136 N LEU A 110 SHEET 7 AA112 TYR A 158 TYR A 160 1 O TYR A 158 N LEU A 135 SHEET 8 AA112 HIS A 182 PHE A 184 1 O PHE A 184 N LEU A 159 SHEET 9 AA112 ARG A 206 LEU A 208 1 O LEU A 208 N LEU A 183 SHEET 10 AA112 THR A 230 TYR A 232 1 O THR A 230 N LEU A 207 SHEET 11 AA112 TYR A 254 ARG A 256 1 O TYR A 254 N LEU A 231 SHEET 12 AA112 SER A 281 SER A 282 1 O SER A 281 N LEU A 255 SHEET 1 AA2 2 HIS A 71 VAL A 72 0 SHEET 2 AA2 2 ARG A 95 ILE A 96 1 O ARG A 95 N VAL A 72 SHEET 1 AA3 2 SER A 192 VAL A 193 0 SHEET 2 AA3 2 ARG A 216 VAL A 217 1 O ARG A 216 N VAL A 193 SHEET 1 AA4 2 TRP A 262 VAL A 263 0 SHEET 2 AA4 2 CYS A 287 LEU A 289 1 O ASN A 288 N TRP A 262 SHEET 1 AA512 VAL B 32 TYR B 34 0 SHEET 2 AA512 THR B 40 SER B 42 -1 O SER B 42 N VAL B 32 SHEET 3 AA512 ARG B 61 PHE B 63 1 O ARG B 61 N THR B 41 SHEET 4 AA512 ILE B 85 TRP B 87 1 O ILE B 85 N ILE B 62 SHEET 5 AA512 GLN B 109 ASP B 111 1 O ASP B 111 N LEU B 86 SHEET 6 AA512 THR B 134 HIS B 136 1 O HIS B 136 N LEU B 110 SHEET 7 AA512 TYR B 158 TYR B 160 1 O TYR B 158 N LEU B 135 SHEET 8 AA512 HIS B 182 PHE B 184 1 O HIS B 182 N LEU B 159 SHEET 9 AA512 ARG B 206 LEU B 208 1 O ARG B 206 N LEU B 183 SHEET 10 AA512 THR B 230 TYR B 232 1 O THR B 230 N LEU B 207 SHEET 11 AA512 TYR B 254 ARG B 256 1 O TYR B 254 N LEU B 231 SHEET 12 AA512 SER B 281 SER B 282 1 O SER B 281 N LEU B 255 SHEET 1 AA6 2 HIS B 71 VAL B 72 0 SHEET 2 AA6 2 ARG B 95 ILE B 96 1 O ARG B 95 N VAL B 72 SHEET 1 AA7 2 SER B 192 VAL B 193 0 SHEET 2 AA7 2 ARG B 216 VAL B 217 1 O ARG B 216 N VAL B 193 SHEET 1 AA8 2 TRP B 262 VAL B 263 0 SHEET 2 AA8 2 CYS B 287 LEU B 289 1 O ASN B 288 N TRP B 262 SSBOND 1 CYS A 27 CYS A 33 1555 1555 2.03 SSBOND 2 CYS A 31 CYS A 43 1555 1555 2.03 SSBOND 3 CYS A 264 CYS A 287 1555 1555 2.03 SSBOND 4 CYS A 266 CYS A 335 1555 1555 2.03 SSBOND 5 CYS A 309 CYS A 336 1555 1555 2.03 SSBOND 6 CYS B 27 CYS B 33 1555 1555 2.03 SSBOND 7 CYS B 31 CYS B 43 1555 1555 2.03 SSBOND 8 CYS B 264 CYS B 287 1555 1555 2.03 SSBOND 9 CYS B 266 CYS B 335 1555 1555 2.03 SSBOND 10 CYS B 309 CYS B 336 1555 1555 2.03 LINK ND2 ASN A 82 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 179 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN A 237 C1 NAG A 403 1555 1555 1.44 LINK ND2 ASN B 82 C1 NAG B 401 1555 1555 1.44 LINK ND2 ASN B 179 C1 NAG B 402 1555 1555 1.44 LINK ND2 ASN B 237 C1 NAG B 403 1555 1555 1.44 CISPEP 1 GLU A 36 PRO A 37 0 2.09 CISPEP 2 LEU A 289 PRO A 290 0 0.01 CISPEP 3 GLU B 36 PRO B 37 0 -0.41 CISPEP 4 LEU B 289 PRO B 290 0 -1.61 CRYST1 151.624 46.586 120.670 90.00 123.45 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006595 0.000000 0.004357 0.00000 SCALE2 0.000000 0.021466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009932 0.00000