HEADER MEMBRANE PROTEIN 17-MAY-17 5O0T TITLE CRYSTAL STRUCTURE OF TRANS-MEMBRANE DOMAIN OF CYLINDROSPERMUM STAGNALE TITLE 2 NADPH-OXIDASE 5 (NOX5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FERRIC REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYLINDROSPERMUM STAGNALE PCC 7417; SOURCE 3 ORGANISM_TAXID: 56107; SOURCE 4 GENE: CYLST_1289; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RP+ KEYWDS MEMBRANE PROTEIN, REACTIVE OXYGEN SPECIES, OXIDATIVE STRESS, REDOX KEYWDS 2 BIOLOGY EXPDTA X-RAY DIFFRACTION AUTHOR F.MAGNANI,S.NENCI,A.MATTEVI REVDAT 3 08-MAY-24 5O0T 1 REMARK REVDAT 2 05-JUL-17 5O0T 1 JRNL REVDAT 1 28-JUN-17 5O0T 0 JRNL AUTH F.MAGNANI,S.NENCI,E.MILLANA FANANAS,M.CECCON,E.ROMERO, JRNL AUTH 2 M.W.FRAAIJE,A.MATTEVI JRNL TITL CRYSTAL STRUCTURES AND ATOMIC MODEL OF NADPH OXIDASE. JRNL REF PROC. NATL. ACAD. SCI. V. 114 6764 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28607049 JRNL DOI 10.1073/PNAS.1702293114 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 19905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1461 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 205 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 1.29000 REMARK 3 B33 (A**2) : -1.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.986 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1912 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1920 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2586 ; 1.660 ; 2.041 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4376 ; 0.986 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 205 ; 4.840 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;35.707 ;22.424 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;14.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;10.297 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2012 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 477 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 823 ; 1.416 ; 2.475 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 824 ; 1.415 ; 2.481 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1027 ; 2.137 ; 3.701 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1028 ; 2.138 ; 3.703 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1089 ; 2.349 ; 3.222 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1089 ; 2.349 ; 3.222 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1560 ; 3.682 ; 4.571 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2257 ; 5.377 ;30.392 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2258 ; 5.376 ;30.425 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -6.0220 -13.7700 12.1230 REMARK 3 T TENSOR REMARK 3 T11: 0.0871 T22: 0.0633 REMARK 3 T33: 0.0832 T12: -0.0410 REMARK 3 T13: -0.0151 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.2598 L22: 3.0219 REMARK 3 L33: 7.6757 L12: 0.0819 REMARK 3 L13: -0.2211 L23: -4.8059 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: 0.0446 S13: -0.0699 REMARK 3 S21: 0.0100 S22: 0.1463 S23: 0.1227 REMARK 3 S31: -0.0230 S32: -0.2478 S33: -0.1720 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -0.9610 -3.3600 -8.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.1138 REMARK 3 T33: 0.0756 T12: 0.0067 REMARK 3 T13: -0.0023 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.9199 L22: 0.8737 REMARK 3 L33: 3.3740 L12: -0.5559 REMARK 3 L13: -1.5095 L23: 0.8297 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.1644 S13: -0.1369 REMARK 3 S21: -0.0581 S22: 0.0176 S23: 0.0789 REMARK 3 S31: -0.0278 S32: -0.0703 S33: -0.0095 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -13.6450 2.6010 17.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.0980 REMARK 3 T33: 0.0959 T12: 0.0086 REMARK 3 T13: 0.0692 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 6.1476 L22: 6.0031 REMARK 3 L33: 4.8529 L12: 1.1136 REMARK 3 L13: -0.9523 L23: -2.0329 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: -0.2081 S13: -0.1357 REMARK 3 S21: 0.2107 S22: -0.0141 S23: 0.1327 REMARK 3 S31: 0.0415 S32: 0.0839 S33: -0.0128 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 7.3180 1.0850 -4.5770 REMARK 3 T TENSOR REMARK 3 T11: 0.0026 T22: 0.1194 REMARK 3 T33: 0.0738 T12: 0.0080 REMARK 3 T13: 0.0093 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.9082 L22: 0.9056 REMARK 3 L33: 3.3414 L12: -0.1754 REMARK 3 L13: -1.7309 L23: 0.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.0234 S13: -0.0812 REMARK 3 S21: -0.0091 S22: 0.0195 S23: -0.0614 REMARK 3 S31: -0.0113 S32: 0.2541 S33: -0.0432 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 7.3170 11.1520 2.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.0421 REMARK 3 T33: 0.0616 T12: -0.0310 REMARK 3 T13: -0.0286 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.7592 L22: 0.3001 REMARK 3 L33: 5.0375 L12: 0.0092 REMARK 3 L13: 0.1796 L23: -0.3153 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.0297 S13: 0.1235 REMARK 3 S21: 0.0183 S22: 0.0176 S23: -0.0766 REMARK 3 S31: -0.2910 S32: 0.2582 S33: 0.0321 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -14.1440 11.6680 4.2660 REMARK 3 T TENSOR REMARK 3 T11: 0.0657 T22: 0.1344 REMARK 3 T33: 0.1051 T12: 0.0544 REMARK 3 T13: 0.0242 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 2.8289 L22: 3.8532 REMARK 3 L33: 6.6192 L12: -2.9026 REMARK 3 L13: -3.6734 L23: 4.3279 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: 0.1598 S13: -0.1108 REMARK 3 S21: -0.0484 S22: -0.1000 S23: 0.1295 REMARK 3 S31: -0.2408 S32: -0.0214 S33: 0.0258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 44.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CSTM WAS CONCENTRATED TO 25 MG-ML AND REMARK 280 MIXED WITH MONOOLEIN (1-OLEOYL-RAC-GLYCEROL) IN A 2:3 PROTEIN TO REMARK 280 LIPID RATIO USING TWO COUPLED SYRINGES (HAMILTON) AT 20 C. THE REMARK 280 IN MESO MIX WAS DISPENSED MANUALLY USING A HAMILTON SYRINGE REMARK 280 COUPLED TO A REPETITIVE DISPENSER ONTO A SANDWICH PLATE IN 120 REMARK 280 NL BOLUS OVERLAID BY 1 MICROL OF PRECIPITANT SOLUTION. CRYSTALS REMARK 280 GREW 30% PEG300, 100 MM LI2SO4, 100 MM MES-KOH PH 6.5, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.18550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.56000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.56000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.18550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 330 CG CD OE1 NE2 REMARK 470 PHE A 389 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 662 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 663 DISTANCE = 6.58 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 506 REMARK 610 LFA A 507 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 504 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 299 NE2 REMARK 620 2 HEM A 504 NA 87.9 REMARK 620 3 HEM A 504 NB 89.0 91.2 REMARK 620 4 HEM A 504 NC 91.2 178.8 88.1 REMARK 620 5 HEM A 504 ND 91.3 89.8 179.0 90.9 REMARK 620 6 HIS A 372 NE2 175.5 88.0 89.5 93.0 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 505 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 HEM A 505 NA 94.4 REMARK 620 3 HEM A 505 NB 91.8 89.0 REMARK 620 4 HEM A 505 NC 85.6 178.9 90.0 REMARK 620 5 HEM A 505 ND 87.7 91.1 179.5 90.0 REMARK 620 6 HIS A 385 NE2 172.5 89.2 94.9 91.0 85.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D10 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D10 A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D10 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 516 DBREF 5O0T A 207 412 UNP K9WT99 K9WT99_9NOST 207 412 SEQADV 5O0T GLY A 207 UNP K9WT99 GLN 207 ENGINEERED MUTATION SEQADV 5O0T SER A 208 UNP K9WT99 LYS 208 ENGINEERED MUTATION SEQADV 5O0T ALA A 410 UNP K9WT99 THR 410 ENGINEERED MUTATION SEQADV 5O0T ALA A 411 UNP K9WT99 THR 411 ENGINEERED MUTATION SEQADV 5O0T GLU A 412 UNP K9WT99 LYS 412 ENGINEERED MUTATION SEQRES 1 A 206 GLY SER ALA TYR ILE LYS TYR TYR ILE GLU ASN ASN TRP SEQRES 2 A 206 VAL LYS ILE ALA PHE LEU ALA LEU TYR VAL PHE VAL ASN SEQRES 3 A 206 MET PHE PHE PHE MET SER ALA VAL GLU LYS TYR GLU SER SEQRES 4 A 206 GLN GLY ALA ASN LEU TYR VAL GLN ILE ALA ARG GLY CYS SEQRES 5 A 206 GLY ALA THR LEU ASN LEU ASN GLY ALA LEU ILE LEU ILE SEQRES 6 A 206 PRO MET LEU ARG HIS PHE MET THR TRP LEU ARG LYS THR SEQRES 7 A 206 THR ILE ASN ASN TYR ILE PRO ILE ASP GLU SER ILE GLU SEQRES 8 A 206 PHE HIS LYS LEU VAL GLY GLN VAL MET PHE ALA LEU ALA SEQRES 9 A 206 ILE VAL HIS THR GLY ALA HIS PHE LEU ASN TYR THR THR SEQRES 10 A 206 LEU PRO ILE PRO PHE ALA GLN SER LEU PHE GLY THR LYS SEQRES 11 A 206 ALA GLY ILE SER GLY PHE LEU LEU LEU LEU VAL PHE ILE SEQRES 12 A 206 ILE MET TRP VAL THR ALA GLN ALA PRO ILE ARG LYS GLY SEQRES 13 A 206 GLY LYS PHE ALA LEU PHE TYR ILE ALA HIS MET GLY TYR SEQRES 14 A 206 VAL LEU TRP PHE ALA LEU ALA LEU ILE HIS GLY PRO VAL SEQRES 15 A 206 PHE TRP GLN TRP VAL LEU LEU PRO VAL VAL GLY PHE ILE SEQRES 16 A 206 ILE GLU LEU VAL ILE ARG TRP LYS ALA ALA GLU HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET HEM A 504 43 HET HEM A 505 43 HET LFA A 506 17 HET LFA A 507 17 HET D10 A 508 10 HET D10 A 509 10 HET D10 A 510 10 HET GOL A 511 6 HET GOL A 512 6 HET PEG A 513 7 HET PEG A 514 7 HET PEG A 515 7 HET PEG A 516 7 HETNAM SO4 SULFATE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM LFA EICOSANE HETNAM D10 DECANE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN HEM HEME HETSYN LFA LIPID FRAGMENT HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HEM 2(C34 H32 FE N4 O4) FORMUL 7 LFA 2(C20 H42) FORMUL 9 D10 3(C10 H22) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 14 PEG 4(C4 H10 O3) FORMUL 18 HOH *63(H2 O) HELIX 1 AA1 GLY A 207 ASN A 218 1 12 HELIX 2 AA2 ASN A 218 GLN A 246 1 29 HELIX 3 AA3 ASN A 249 LEU A 270 1 22 HELIX 4 AA4 ILE A 271 MET A 273 5 3 HELIX 5 AA5 LEU A 274 LYS A 283 1 10 HELIX 6 AA6 THR A 284 TYR A 289 5 6 HELIX 7 AA7 PRO A 291 ASP A 293 5 3 HELIX 8 AA8 GLU A 294 THR A 323 1 30 HELIX 9 AA9 PRO A 327 THR A 335 1 9 HELIX 10 AB1 THR A 335 GLN A 356 1 22 HELIX 11 AB2 GLN A 356 LYS A 361 1 6 HELIX 12 AB3 LYS A 364 MET A 373 1 10 HELIX 13 AB4 GLY A 374 GLY A 386 1 13 HELIX 14 AB5 TRP A 390 TRP A 392 5 3 HELIX 15 AB6 VAL A 393 ALA A 411 1 19 LINK NE2 HIS A 299 FE HEM A 504 1555 1555 2.01 LINK NE2 HIS A 313 FE HEM A 505 1555 1555 1.99 LINK NE2 HIS A 372 FE HEM A 504 1555 1555 2.02 LINK NE2 HIS A 385 FE HEM A 505 1555 1555 1.91 SITE 1 AC1 5 LYS A 300 ALA A 357 ARG A 360 SO4 A 502 SITE 2 AC1 5 HOH A 605 SITE 1 AC2 7 ILE A 296 GLU A 297 LYS A 300 ARG A 360 SITE 2 AC2 7 LYS A 361 SO4 A 501 HOH A 623 SITE 1 AC3 4 GLY A 207 ARG A 275 HIS A 276 ARG A 407 SITE 1 AC4 19 ALA A 209 LYS A 212 MET A 273 ILE A 296 SITE 2 AC4 19 HIS A 299 GLY A 303 GLN A 304 PHE A 348 SITE 3 AC4 19 MET A 351 ALA A 355 GLN A 356 ARG A 360 SITE 4 AC4 19 PHE A 365 PHE A 368 HIS A 372 TYR A 375 SITE 5 AC4 19 TRP A 378 HOH A 618 HOH A 620 SITE 1 AC5 18 ARG A 256 GLY A 259 ASN A 263 HIS A 313 SITE 2 AC5 18 THR A 314 HIS A 317 TYR A 321 ALA A 337 SITE 3 AC5 18 GLY A 341 PHE A 342 LEU A 344 LEU A 345 SITE 4 AC5 18 PHE A 348 TRP A 378 HIS A 385 HOH A 601 SITE 5 AC5 18 HOH A 607 HOH A 631 SITE 1 AC6 2 PRO A 291 PHE A 298 SITE 1 AC7 3 PHE A 236 GLU A 297 ALA A 308 SITE 1 AC8 1 TYR A 214 SITE 1 AC9 2 PHE A 318 PHE A 328 SITE 1 AD1 1 GOL A 512 SITE 1 AD2 3 VAL A 312 GLY A 315 ALA A 316 SITE 1 AD3 2 PHE A 318 D10 A 510 SITE 1 AD4 1 TRP A 408 SITE 1 AD5 4 SER A 245 TRP A 280 ILE A 406 LYS A 409 SITE 1 AD6 1 TYR A 214 SITE 1 AD7 1 PHE A 333 CRYST1 52.371 74.570 85.120 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011748 0.00000