HEADER OXIDOREDUCTASE 17-MAY-17 5O0X TITLE CRYSTAL STRUCTURE OF DEHYDROGENASE DOMAIN OF CYLINDROSPERMUM STAGNALE TITLE 2 NADPH-OXIDASE 5 (NOX5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FERRIC REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEHYDROGENASE DOMAIN, UNP RESIDUES 413-693; COMPND 5 SYNONYM: NOX5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYLINDROSPERMUM STAGNALE PCC 7417; SOURCE 3 ORGANISM_TAXID: 56107; SOURCE 4 GENE: CYLST_1289; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RP+ KEYWDS MEMBRANE PROTEIN, REACTIVE OXYGEN SPECIES, OXIDATIVE STRESS, REDOX KEYWDS 2 BIOLOGY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.MAGNANI,S.NENCI,A.MATTEVI REVDAT 2 05-JUL-17 5O0X 1 JRNL REVDAT 1 28-JUN-17 5O0X 0 JRNL AUTH F.MAGNANI,S.NENCI,E.MILLANA FANANAS,M.CECCON,E.ROMERO, JRNL AUTH 2 M.W.FRAAIJE,A.MATTEVI JRNL TITL CRYSTAL STRUCTURES AND ATOMIC MODEL OF NADPH OXIDASE. JRNL REF PROC. NATL. ACAD. SCI. V. 114 6764 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28607049 JRNL DOI 10.1073/PNAS.1702293114 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 111.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 33160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2392 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2066 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 213 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : 0.60000 REMARK 3 B33 (A**2) : -1.96000 REMARK 3 B12 (A**2) : 0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.094 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2321 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2183 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3108 ; 1.779 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5038 ; 0.987 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 6.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;34.058 ;23.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ;13.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2425 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 515 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1042 ; 3.137 ; 4.340 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1041 ; 3.139 ; 4.338 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1299 ; 4.741 ; 6.490 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1300 ; 4.740 ; 6.493 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1278 ; 3.873 ; 4.751 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1278 ; 3.873 ; 4.751 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1810 ; 5.859 ; 6.862 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2537 ; 8.251 ;49.463 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2538 ; 8.250 ;49.492 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8729 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 120.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 1.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60 MM CA-ACETATE, 80 MM NACACODYLATE REMARK 280 PH 6.5, 12-16% PEG 8000, 20% GLYCEROL, EVAPORATION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 951 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 959 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 605 REMARK 465 ALA A 606 REMARK 465 GLN A 607 REMARK 465 GLN A 608 REMARK 465 LYS A 609 REMARK 465 SER A 610 REMARK 465 ASP A 611 REMARK 465 MET A 612 REMARK 465 LYS A 613 REMARK 465 SER A 614 REMARK 465 SER A 615 REMARK 465 THR A 616 REMARK 465 LEU A 617 REMARK 465 PHE A 618 REMARK 465 VAL A 619 REMARK 465 ALA A 620 REMARK 465 MET A 621 REMARK 465 ASP A 622 REMARK 465 LEU A 623 REMARK 465 MET A 624 REMARK 465 HIS A 625 REMARK 465 GLN A 626 REMARK 465 GLU A 627 REMARK 465 THR A 628 REMARK 465 LYS A 629 REMARK 465 VAL A 630 REMARK 465 ASP A 631 REMARK 465 ALA A 699 REMARK 465 ALA A 700 REMARK 465 ALA A 701 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 436 CG CD OE1 NE2 REMARK 470 SER A 503 OG REMARK 470 SER A 504 OG REMARK 470 GLN A 505 CG CD OE1 NE2 REMARK 470 SER A 506 OG REMARK 470 LYS A 560 CG CD CE NZ REMARK 470 LYS A 576 CG CD CE NZ REMARK 470 LEU A 632 CG CD1 CD2 REMARK 470 ILE A 633 CG1 CG2 CD1 REMARK 470 THR A 634 OG1 CG2 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 ARG A 639 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 644 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 698 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O7 P6G A 813 O7 P6G A 813 2655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 412 160.58 178.49 REMARK 500 THR A 415 -168.99 -163.21 REMARK 500 ASN A 557 76.43 -162.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 809 REMARK 610 P6G A 810 REMARK 610 P6G A 811 REMARK 610 P6G A 812 REMARK 610 P6G A 813 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 812 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 813 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 814 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 815 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 816 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 817 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 818 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 819 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 821 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 822 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 823 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 824 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 825 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 826 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 827 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 828 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5O0T RELATED DB: PDB REMARK 900 OTHER DOMAIN OF THE SAME PROTEIN DBREF 5O0X A 413 693 UNP K9WT99 K9WT99_9NOST 413 693 SEQADV 5O0X GLY A 411 UNP K9WT99 EXPRESSION TAG SEQADV 5O0X SER A 412 UNP K9WT99 EXPRESSION TAG SEQADV 5O0X PRO A 694 UNP K9WT99 EXPRESSION TAG SEQADV 5O0X TRP A 695 UNP K9WT99 EXPRESSION TAG SEQADV 5O0X LEU A 696 UNP K9WT99 EXPRESSION TAG SEQADV 5O0X GLU A 697 UNP K9WT99 EXPRESSION TAG SEQADV 5O0X LEU A 698 UNP K9WT99 EXPRESSION TAG SEQADV 5O0X ALA A 699 UNP K9WT99 EXPRESSION TAG SEQADV 5O0X ALA A 700 UNP K9WT99 EXPRESSION TAG SEQADV 5O0X ALA A 701 UNP K9WT99 EXPRESSION TAG SEQRES 1 A 291 GLY SER GLU PRO THR PHE VAL VAL ASN ALA SER LEU LEU SEQRES 2 A 291 PRO SER LYS VAL LEU GLY LEU GLN VAL GLN ARG PRO GLN SEQRES 3 A 291 SER PHE ASN TYR GLN PRO GLY ASP TYR LEU PHE ILE LYS SEQRES 4 A 291 CYS PRO GLY ILE SER LYS PHE GLU TRP HIS PRO PHE THR SEQRES 5 A 291 ILE SER SER ALA PRO GLU MET PRO ASP VAL LEU THR LEU SEQRES 6 A 291 HIS ILE ARG ALA VAL GLY SER TRP THR GLY LYS LEU TYR SEQRES 7 A 291 GLN LEU ILE ARG GLU GLN ARG GLU GLU TRP ILE ARG SER SEQRES 8 A 291 GLY SER SER GLN SER LEU PRO GLY VAL PRO VAL TYR ILE SEQRES 9 A 291 ASP GLY PRO TYR GLY THR PRO SER THR HIS ILE PHE GLU SEQRES 10 A 291 SER LYS TYR ALA ILE LEU ILE CYS ALA GLY ILE GLY VAL SEQRES 11 A 291 THR PRO PHE ALA SER ILE LEU LYS SER ILE LEU HIS ARG SEQRES 12 A 291 ASN GLN GLN ASN PRO ALA LYS MET PRO LEU LYS LYS VAL SEQRES 13 A 291 HIS PHE TYR TRP LEU ASN ARG GLU GLN LYS ALA PHE GLU SEQRES 14 A 291 TRP PHE VAL GLU LEU LEU SER LYS ILE GLU ALA GLU ASP SEQRES 15 A 291 THR ASN ASN LEU PHE ASP LEU ASN LEU TYR LEU THR GLY SEQRES 16 A 291 ALA GLN GLN LYS SER ASP MET LYS SER SER THR LEU PHE SEQRES 17 A 291 VAL ALA MET ASP LEU MET HIS GLN GLU THR LYS VAL ASP SEQRES 18 A 291 LEU ILE THR GLY LEU LYS SER ARG THR LYS THR GLY ARG SEQRES 19 A 291 PRO ASP TRP GLU GLU ILE PHE LYS ASP VAL ALA LYS GLN SEQRES 20 A 291 HIS ALA PRO ASP ASN VAL GLU VAL PHE PHE CYS GLY PRO SEQRES 21 A 291 THR GLY LEU ALA LEU GLN LEU ARG HIS LEU CYS THR LYS SEQRES 22 A 291 TYR GLY PHE GLY TYR ARG LYS GLU ASN PHE PRO TRP LEU SEQRES 23 A 291 GLU LEU ALA ALA ALA HET FAD A 801 53 HET CL A 802 1 HET CL A 803 1 HET CL A 804 1 HET CL A 805 1 HET CL A 806 1 HET CL A 807 1 HET CL A 808 1 HET P6G A 809 9 HET P6G A 810 9 HET P6G A 811 10 HET P6G A 812 13 HET P6G A 813 13 HET PEG A 814 7 HET PEG A 815 7 HET PEG A 816 7 HET PEG A 817 7 HET PEG A 818 7 HET PEG A 819 7 HET PEG A 820 7 HET PEG A 821 7 HET GOL A 822 6 HET GOL A 823 6 HET GOL A 824 6 HET GOL A 825 6 HET GOL A 826 6 HET GOL A 827 6 HET PEG A 828 7 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CL CHLORIDE ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN P6G POLYETHYLENE GLYCOL PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 CL 7(CL 1-) FORMUL 10 P6G 5(C12 H26 O7) FORMUL 15 PEG 9(C4 H10 O3) FORMUL 23 GOL 6(C3 H8 O3) FORMUL 30 HOH *99(H2 O) HELIX 1 AA1 GLY A 481 GLY A 502 1 22 HELIX 2 AA2 THR A 520 SER A 528 5 9 HELIX 3 AA3 VAL A 540 ASN A 557 1 18 HELIX 4 AA4 PRO A 558 MET A 561 5 4 HELIX 5 AA5 GLU A 574 TRP A 580 5 7 HELIX 6 AA6 PHE A 581 ASP A 592 1 12 HELIX 7 AA7 ASP A 646 ALA A 659 1 14 HELIX 8 AA8 PRO A 670 GLY A 685 1 16 HELIX 9 AA9 PHE A 693 GLU A 697 5 5 SHEET 1 AA1 6 HIS A 459 THR A 462 0 SHEET 2 AA1 6 TYR A 445 LYS A 449 -1 N ILE A 448 O HIS A 459 SHEET 3 AA1 6 VAL A 510 TYR A 518 -1 O TYR A 513 N LYS A 449 SHEET 4 AA1 6 GLU A 413 LEU A 423 -1 N THR A 415 O VAL A 512 SHEET 5 AA1 6 VAL A 427 GLN A 433 -1 O GLN A 431 N ASN A 419 SHEET 6 AA1 6 VAL A 472 ARG A 478 -1 O LEU A 475 N LEU A 430 SHEET 1 AA2 5 LYS A 641 THR A 642 0 SHEET 2 AA2 5 PHE A 597 LEU A 603 1 N LEU A 601 O LYS A 641 SHEET 3 AA2 5 LYS A 565 ASN A 572 1 N PHE A 568 O ASP A 598 SHEET 4 AA2 5 TYR A 530 ALA A 536 1 N LEU A 533 O HIS A 567 SHEET 5 AA2 5 GLU A 664 CYS A 668 1 O PHE A 666 N ILE A 532 CISPEP 1 GLY A 516 PRO A 517 0 -0.48 CISPEP 2 ALA A 659 PRO A 660 0 7.68 SITE 1 AC1 22 TYR A 445 HIS A 459 PRO A 460 PHE A 461 SITE 2 AC1 22 THR A 462 HIS A 476 ARG A 478 VAL A 480 SITE 3 AC1 22 GLY A 481 SER A 482 TRP A 483 THR A 484 SITE 4 AC1 22 ILE A 538 THR A 541 ARG A 678 LYS A 690 SITE 5 AC1 22 TRP A 695 CL A 806 P6G A 811 HOH A 907 SITE 6 AC1 22 HOH A 911 HOH A 938 SITE 1 AC2 1 ARG A 478 SITE 1 AC3 1 PEG A 819 SITE 1 AC4 1 PRO A 467 SITE 1 AC5 1 FAD A 801 SITE 1 AC6 2 SER A 482 LYS A 486 SITE 1 AC7 7 SER A 412 LYS A 449 LYS A 455 TRP A 458 SITE 2 AC7 7 TYR A 513 GLU A 664 P6G A 810 SITE 1 AC8 9 TRP A 458 ASP A 515 PRO A 521 HIS A 524 SITE 2 AC8 9 GLU A 527 SER A 528 ARG A 689 P6G A 809 SITE 3 AC8 9 PEG A 820 SITE 1 AC9 8 LEU A 675 ARG A 678 TYR A 688 LYS A 690 SITE 2 AC9 8 ASN A 692 TRP A 695 FAD A 801 HOH A 907 SITE 1 AD1 12 SER A 425 ARG A 478 ALA A 536 ASN A 572 SITE 2 AD1 12 ARG A 573 GLU A 574 ALA A 577 THR A 604 SITE 3 AD1 12 LEU A 696 HOH A 929 HOH A 934 HOH A 964 SITE 1 AD2 6 LYS A 652 LYS A 656 ALA A 659 PRO A 660 SITE 2 AD2 6 TYR A 684 GOL A 826 SITE 1 AD3 4 LYS A 455 LYS A 683 GOL A 822 GOL A 826 SITE 1 AD4 4 HIS A 552 GLN A 555 LYS A 587 GLU A 591 SITE 1 AD5 7 LYS A 548 GLU A 579 TRP A 580 PHE A 581 SITE 2 AD5 7 VAL A 582 GLU A 583 LEU A 584 SITE 1 AD6 4 PRO A 517 TYR A 518 THR A 520 HOH A 976 SITE 1 AD7 7 LYS A 565 ASP A 592 ASN A 595 PHE A 597 SITE 2 AD7 7 ASP A 598 HOH A 924 HOH A 930 SITE 1 AD8 3 LYS A 426 TYR A 488 CL A 803 SITE 1 AD9 5 ASP A 661 ASN A 662 GLU A 664 P6G A 810 SITE 2 AD9 5 HOH A 913 SITE 1 AE1 3 ASN A 439 GLN A 441 ASP A 444 SITE 1 AE2 8 PHE A 456 ALA A 659 PRO A 660 ASP A 661 SITE 2 AE2 8 TYR A 684 GLY A 685 PEG A 814 HOH A 910 SITE 1 AE3 3 SER A 425 LYS A 426 HOH A 901 SITE 1 AE4 6 SER A 421 GLY A 429 GLN A 431 THR A 474 SITE 2 AE4 6 HIS A 476 HOH A 955 SITE 1 AE5 6 VAL A 417 VAL A 418 ASN A 419 GLN A 494 SITE 2 AE5 6 GLY A 509 HOH A 917 SITE 1 AE6 3 LYS A 683 P6G A 813 PEG A 814 SITE 1 AE7 3 ILE A 650 ASP A 653 HOH A 961 SITE 1 AE8 3 SER A 586 THR A 634 HOH A 986 CRYST1 128.279 128.279 72.519 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007796 0.004501 0.000000 0.00000 SCALE2 0.000000 0.009001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013789 0.00000