HEADER HYDROLASE 23-MAY-17 5O33 TITLE A STRUCTURE OF THE GEF KALIRIN DH1 DOMAIN IN COMPLEX WITH THE SMALL TITLE 2 GTPASE RAC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELL MIGRATION-INDUCING GENE 5 PROTEIN,RAS-LIKE PROTEIN COMPND 5 TC25,P21-RAC1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: KALIRIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 1253-1432; COMPND 11 SYNONYM: HUNTINGTIN-ASSOCIATED PROTEIN-INTERACTING PROTEIN,PAM COOH- COMPND 12 TERMINAL INTERACTOR PROTEIN 10,P-CIP10,PROTEIN DUO,SERINE/THREONINE- COMPND 13 PROTEIN KINASE WITH DBL- AND PLECKSTRIN HOMOLOGY DOMAIN; COMPND 14 EC: 2.7.11.1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC1, TC25, MIG5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: KALRN, DUO, HAPIP; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX. GEF. SMALL GTPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.GRAY,T.KROJER,R.TALON,M.FAIRHEAD,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 2 A.EDWARDS,P.BRENNAN,F.VON DELFT REVDAT 3 17-JAN-24 5O33 1 REMARK REVDAT 2 16-OCT-19 5O33 1 REMARK REVDAT 1 31-MAY-17 5O33 0 JRNL AUTH J.GRAY,T.KROJER,R.TALON,M.FAIRHEAD,C.BOUNTRA,C.H.ARROWSMITH, JRNL AUTH 2 A.EDWARDS,P.BRENNAN,F.VON DELFT JRNL TITL A STRUCTURE OF THE GEF KALIRIN DH1 DOMAIN IN COMPLEX WITH JRNL TITL 2 THE SMALL GTPASE RAC1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 49371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.8106 - 4.2168 0.99 3191 197 0.1671 0.1870 REMARK 3 2 4.2168 - 3.3471 0.99 3001 162 0.1644 0.1973 REMARK 3 3 3.3471 - 2.9241 0.98 2921 140 0.2015 0.2212 REMARK 3 4 2.9241 - 2.6567 0.97 2847 151 0.2035 0.2562 REMARK 3 5 2.6567 - 2.4663 0.97 2835 147 0.2076 0.2375 REMARK 3 6 2.4663 - 2.3209 0.96 2814 117 0.2017 0.2577 REMARK 3 7 2.3209 - 2.2047 0.97 2800 143 0.2155 0.2378 REMARK 3 8 2.2047 - 2.1087 0.95 2696 155 0.2343 0.3131 REMARK 3 9 2.1087 - 2.0275 0.96 2786 137 0.2594 0.3283 REMARK 3 10 2.0275 - 1.9575 0.95 2713 150 0.2716 0.3613 REMARK 3 11 1.9575 - 1.8963 0.95 2698 147 0.2911 0.3252 REMARK 3 12 1.8963 - 1.8421 0.94 2692 139 0.3079 0.3537 REMARK 3 13 1.8421 - 1.7936 0.93 2623 145 0.3296 0.3450 REMARK 3 14 1.7936 - 1.7499 0.93 2637 118 0.3612 0.3981 REMARK 3 15 1.7499 - 1.7101 0.91 2561 135 0.3939 0.4744 REMARK 3 16 1.7101 - 1.6737 0.92 2621 118 0.4130 0.4064 REMARK 3 17 1.6737 - 1.6402 0.88 2493 141 0.4308 0.4863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2921 REMARK 3 ANGLE : 1.072 3968 REMARK 3 CHIRALITY : 0.043 451 REMARK 3 PLANARITY : 0.005 503 REMARK 3 DIHEDRAL : 14.308 1071 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3091 -14.7920 17.8238 REMARK 3 T TENSOR REMARK 3 T11: 0.3375 T22: 0.2642 REMARK 3 T33: 0.3136 T12: 0.1402 REMARK 3 T13: -0.0737 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.8808 L22: 3.4797 REMARK 3 L33: 0.2010 L12: 0.3300 REMARK 3 L13: 0.2375 L23: -0.7733 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: 0.0519 S13: 0.1119 REMARK 3 S21: -0.1520 S22: -0.1877 S23: -0.0831 REMARK 3 S31: -0.0414 S32: 0.0780 S33: 0.0992 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0000 -7.6085 18.0962 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.3909 REMARK 3 T33: 0.4921 T12: 0.1379 REMARK 3 T13: -0.0069 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 3.0797 L22: 0.9483 REMARK 3 L33: 1.7623 L12: 0.7972 REMARK 3 L13: 1.5818 L23: -0.3372 REMARK 3 S TENSOR REMARK 3 S11: 0.0777 S12: -0.0382 S13: 0.2282 REMARK 3 S21: -0.1960 S22: -0.1457 S23: -0.2654 REMARK 3 S31: -0.0015 S32: -0.2913 S33: 0.1361 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2186 -20.3984 14.0088 REMARK 3 T TENSOR REMARK 3 T11: 0.3603 T22: 0.3520 REMARK 3 T33: 0.3433 T12: 0.1740 REMARK 3 T13: -0.1126 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: 2.8121 L22: 2.4852 REMARK 3 L33: 2.0251 L12: -0.6017 REMARK 3 L13: -0.2404 L23: -0.5182 REMARK 3 S TENSOR REMARK 3 S11: 0.2458 S12: 0.4607 S13: -0.3896 REMARK 3 S21: -0.4295 S22: -0.2409 S23: 0.2887 REMARK 3 S31: 0.2594 S32: 0.0064 S33: 0.0078 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3515 -26.9323 27.3522 REMARK 3 T TENSOR REMARK 3 T11: 0.2472 T22: 0.2612 REMARK 3 T33: 0.3153 T12: 0.1463 REMARK 3 T13: -0.0014 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.9628 L22: 3.1164 REMARK 3 L33: 2.0385 L12: -0.2112 REMARK 3 L13: 1.1888 L23: -0.4809 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: -0.2160 S13: -0.3460 REMARK 3 S21: -0.0885 S22: -0.0951 S23: 0.0718 REMARK 3 S31: 0.1797 S32: -0.0510 S33: -0.0092 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1859 -18.1708 18.8198 REMARK 3 T TENSOR REMARK 3 T11: 0.2868 T22: 0.3211 REMARK 3 T33: 0.3399 T12: 0.2028 REMARK 3 T13: 0.0375 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.0939 L22: 2.0396 REMARK 3 L33: 2.5599 L12: -0.5533 REMARK 3 L13: 0.2583 L23: 1.2878 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: 0.4487 S13: 0.2739 REMARK 3 S21: -0.3659 S22: -0.0185 S23: -0.6319 REMARK 3 S31: -0.0656 S32: 0.7086 S33: -0.0375 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1232 THROUGH 1257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0037 -1.8726 18.1250 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.2649 REMARK 3 T33: 0.3046 T12: 0.0432 REMARK 3 T13: 0.0066 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.8382 L22: 2.5972 REMARK 3 L33: 8.6778 L12: -0.3454 REMARK 3 L13: 2.4648 L23: 1.0240 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: 0.1588 S13: 0.4199 REMARK 3 S21: 0.0587 S22: 0.0868 S23: -0.3905 REMARK 3 S31: -0.5342 S32: 0.5106 S33: -0.0720 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1258 THROUGH 1277 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2683 -12.0539 -8.1520 REMARK 3 T TENSOR REMARK 3 T11: 0.7837 T22: 0.9012 REMARK 3 T33: 0.2579 T12: 0.2828 REMARK 3 T13: -0.1278 T23: -0.1025 REMARK 3 L TENSOR REMARK 3 L11: 2.2623 L22: 1.6622 REMARK 3 L33: 1.7696 L12: 0.3823 REMARK 3 L13: -1.0534 L23: -0.7859 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: 0.4964 S13: -0.9285 REMARK 3 S21: -1.1974 S22: 0.0980 S23: 0.3938 REMARK 3 S31: 0.8702 S32: 0.7406 S33: -0.3093 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1278 THROUGH 1341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9513 -10.3635 14.2875 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.3213 REMARK 3 T33: 0.3499 T12: 0.0360 REMARK 3 T13: -0.0847 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.4499 L22: 2.9563 REMARK 3 L33: 3.0645 L12: -1.6927 REMARK 3 L13: 0.1819 L23: 0.0257 REMARK 3 S TENSOR REMARK 3 S11: 0.3050 S12: 0.2022 S13: -0.3159 REMARK 3 S21: -0.1556 S22: -0.0424 S23: 0.3487 REMARK 3 S31: 0.4292 S32: -0.1379 S33: -0.1660 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1342 THROUGH 1353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6796 -11.4140 -5.6837 REMARK 3 T TENSOR REMARK 3 T11: 0.7330 T22: 1.2658 REMARK 3 T33: 0.0607 T12: 0.4505 REMARK 3 T13: 0.1555 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.9603 L22: 0.4567 REMARK 3 L33: 3.7018 L12: 0.9135 REMARK 3 L13: -0.3771 L23: -0.5610 REMARK 3 S TENSOR REMARK 3 S11: 0.2410 S12: 1.2095 S13: -0.1035 REMARK 3 S21: -0.3950 S22: 0.2071 S23: -0.0067 REMARK 3 S31: -0.1870 S32: 0.2448 S33: 0.0743 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1354 THROUGH 1372 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8999 -12.1517 10.3885 REMARK 3 T TENSOR REMARK 3 T11: 0.3144 T22: 0.4175 REMARK 3 T33: 0.2798 T12: 0.1347 REMARK 3 T13: -0.0468 T23: -0.0786 REMARK 3 L TENSOR REMARK 3 L11: 2.1868 L22: 0.7568 REMARK 3 L33: 1.1033 L12: -1.0973 REMARK 3 L13: -0.7023 L23: -0.0723 REMARK 3 S TENSOR REMARK 3 S11: 0.4025 S12: 0.2331 S13: -0.1026 REMARK 3 S21: -0.4142 S22: -0.0937 S23: 0.0953 REMARK 3 S31: 0.0855 S32: 0.4804 S33: -0.1887 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1373 THROUGH 1387 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4574 -8.6681 32.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.3499 T22: 0.4102 REMARK 3 T33: 0.3488 T12: 0.1594 REMARK 3 T13: -0.0378 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.6102 L22: 2.9956 REMARK 3 L33: 1.9404 L12: 1.1341 REMARK 3 L13: 1.1312 L23: 0.9254 REMARK 3 S TENSOR REMARK 3 S11: -0.1215 S12: -0.6084 S13: 0.3007 REMARK 3 S21: 0.7592 S22: 0.3732 S23: -0.1358 REMARK 3 S31: 0.0220 S32: 0.1424 S33: -0.3015 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1388 THROUGH 1410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0968 -18.0740 25.9345 REMARK 3 T TENSOR REMARK 3 T11: 0.3349 T22: 0.4060 REMARK 3 T33: 0.4797 T12: -0.0237 REMARK 3 T13: -0.0529 T23: 0.1035 REMARK 3 L TENSOR REMARK 3 L11: 2.6267 L22: 2.2976 REMARK 3 L33: 2.4387 L12: 1.1346 REMARK 3 L13: 1.4577 L23: -0.7675 REMARK 3 S TENSOR REMARK 3 S11: 0.4519 S12: -0.4438 S13: -0.5565 REMARK 3 S21: 0.8833 S22: -0.0564 S23: 0.4421 REMARK 3 S31: 0.7739 S32: -0.7131 S33: -0.4694 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52137 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 57.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.09710 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2NZ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE PH4.2, 0.2M SODIUM REMARK 280 CHLORIDE, 18% (W/V) PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 231.13600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.56800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 173.35200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.78400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 288.92000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 231.13600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 115.56800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.78400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 173.35200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 288.92000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 1411 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 MET A 45 CG SD CE REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 PHE B1236 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B1269 CG CD OE1 OE2 REMARK 470 GLU B1348 CG CD OE1 OE2 REMARK 470 GLN B1351 CG CD OE1 NE2 REMARK 470 GLU B1385 CG CD OE1 OE2 REMARK 470 GLU B1386 CG CD OE1 OE2 REMARK 470 LYS B1388 CG CD CE NZ REMARK 470 LYS B1392 CG CD CE NZ REMARK 470 HIS B1410 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 407 O HOH A 436 2.01 REMARK 500 NH2 ARG B 1369 O HOH B 1601 2.14 REMARK 500 OE1 GLU B 1245 O HOH B 1601 2.16 REMARK 500 O HOH A 407 O HOH A 418 2.18 REMARK 500 O HOH A 430 O HOH A 442 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 325 O HOH A 325 10445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 96 -55.38 -127.36 REMARK 500 THR B1258 -76.71 -116.68 REMARK 500 GLU B1268 -157.13 -130.89 REMARK 500 ILE B1295 -60.33 -125.94 REMARK 500 CYS B1383 17.31 -140.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1504 DBREF 5O33 A 1 177 UNP P63000 RAC1_HUMAN 1 177 DBREF 5O33 B 1232 1411 UNP P97924 KALRN_RAT 1253 1432 SEQRES 1 A 177 MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 A 177 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 A 177 ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP ASN SEQRES 4 A 177 TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL ASN SEQRES 5 A 177 LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 A 177 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 A 177 LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE GLU SEQRES 8 A 177 ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS HIS SEQRES 9 A 177 CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS LEU SEQRES 10 A 177 ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU LYS SEQRES 11 A 177 GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY LEU SEQRES 12 A 177 ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU GLU SEQRES 13 A 177 CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL PHE SEQRES 14 A 177 ASP GLU ALA ILE ARG ALA VAL LEU SEQRES 1 B 180 ARG LYS LYS GLU PHE ILE MET ALA GLU LEU LEU GLN THR SEQRES 2 B 180 GLU LYS ALA TYR VAL ARG ASP LEU HIS GLU CYS LEU GLU SEQRES 3 B 180 THR TYR LEU TRP GLU MET THR SER GLY VAL GLU GLU ILE SEQRES 4 B 180 PRO PRO GLY ILE LEU ASN LYS GLU HIS ILE ILE PHE GLY SEQRES 5 B 180 ASN ILE GLN GLU ILE TYR ASP PHE HIS ASN ASN ILE PHE SEQRES 6 B 180 LEU LYS GLU LEU GLU LYS TYR GLU GLN LEU PRO GLU ASP SEQRES 7 B 180 VAL GLY HIS CYS PHE VAL THR TRP ALA ASP LYS PHE GLN SEQRES 8 B 180 MET TYR VAL THR TYR CYS LYS ASN LYS PRO ASP SER ASN SEQRES 9 B 180 GLN LEU ILE LEU GLU HIS ALA GLY THR PHE PHE ASP GLU SEQRES 10 B 180 ILE GLN GLN ARG HIS GLY LEU ALA ASN SER ILE SER SER SEQRES 11 B 180 TYR LEU ILE LYS PRO VAL GLN ARG VAL THR LYS TYR GLN SEQRES 12 B 180 LEU LEU LEU LYS GLU LEU LEU THR CYS CYS GLU GLU GLY SEQRES 13 B 180 LYS GLY GLU LEU LYS ASP GLY LEU GLU VAL MET LEU SER SEQRES 14 B 180 VAL PRO LYS LYS ALA ASN ASP ALA MET HIS VAL HET EDO A 201 4 HET EDO A 202 10 HET GDP A 203 28 HET EDO B1501 4 HET EDO B1502 10 HET EDO B1503 10 HET EDO B1504 10 HETNAM EDO 1,2-ETHANEDIOL HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 10 HOH *282(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 LEU A 67 TYR A 72 5 6 HELIX 3 AA3 SER A 86 LYS A 96 1 11 HELIX 4 AA4 LYS A 96 CYS A 105 1 10 HELIX 5 AA5 LYS A 116 ARG A 120 5 5 HELIX 6 AA6 ASP A 122 GLU A 131 1 10 HELIX 7 AA7 THR A 138 GLY A 150 1 13 HELIX 8 AA8 GLY A 164 LEU A 177 1 14 HELIX 9 AA9 LYS B 1233 THR B 1258 1 26 HELIX 10 AB1 THR B 1258 GLY B 1266 1 9 HELIX 11 AB2 LYS B 1277 GLY B 1283 1 7 HELIX 12 AB3 ASN B 1284 ILE B 1295 1 12 HELIX 13 AB4 ILE B 1295 TYR B 1303 1 9 HELIX 14 AB5 LEU B 1306 ASP B 1309 5 4 HELIX 15 AB6 VAL B 1310 TRP B 1317 1 8 HELIX 16 AB7 ALA B 1318 PHE B 1321 5 4 HELIX 17 AB8 GLN B 1322 ALA B 1342 1 21 HELIX 18 AB9 THR B 1344 GLY B 1354 1 11 HELIX 19 AC1 SER B 1358 ILE B 1364 1 7 HELIX 20 AC2 ILE B 1364 THR B 1371 1 8 HELIX 21 AC3 LYS B 1372 THR B 1382 1 11 HELIX 22 AC4 GLY B 1387 ALA B 1408 1 22 SHEET 1 AA1 6 TYR A 40 VAL A 46 0 SHEET 2 AA1 6 LYS A 49 TRP A 56 -1 O LEU A 55 N TYR A 40 SHEET 3 AA1 6 GLN A 2 VAL A 9 1 N ILE A 4 O GLY A 54 SHEET 4 AA1 6 VAL A 77 SER A 83 1 O CYS A 81 N VAL A 9 SHEET 5 AA1 6 ILE A 110 THR A 115 1 O THR A 115 N PHE A 82 SHEET 6 AA1 6 LYS A 153 GLU A 156 1 O LEU A 155 N GLY A 114 CISPEP 1 GLU B 1386 GLY B 1387 0 -6.83 SITE 1 AC1 5 LYS A 153 TYR A 154 HOH A 301 HOH A 370 SITE 2 AC1 5 HOH A 377 SITE 1 AC2 5 ASP A 121 HOH A 331 HOH A 354 THR B1316 SITE 2 AC2 5 TRP B1317 SITE 1 AC3 18 ASP A 11 ALA A 13 VAL A 14 GLY A 15 SITE 2 AC3 18 LYS A 16 THR A 17 CYS A 18 ILE A 33 SITE 3 AC3 18 LYS A 116 ASP A 118 LEU A 119 SER A 158 SITE 4 AC3 18 ALA A 159 LEU A 160 HOH A 307 HOH A 363 SITE 5 AC3 18 HOH A 368 HOH A 371 SITE 1 AC4 4 ARG B1232 PHE B1236 ALA B1239 GLN B1243 SITE 1 AC5 6 VAL A 36 ASP A 38 GLN B1368 ARG B1369 SITE 2 AC5 6 HOH B1609 HOH B1643 SITE 1 AC6 5 THR A 138 HOH A 328 GLU B1299 HOH B1669 SITE 2 AC6 5 HOH B1688 SITE 1 AC7 2 ARG B1232 LYS B1233 CRYST1 63.255 63.255 346.704 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015809 0.009127 0.000000 0.00000 SCALE2 0.000000 0.018255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002884 0.00000