HEADER VIRAL PROTEIN 23-MAY-17 5O36 TITLE JAPANESE ENCEPHALITIS VIRUS NON-STRUCTURAL PROTEIN 1' C-TERMINAL TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: JAPANESE ENCEPHALITIS VIRUS NON-STRUCTURAL PROTEIN 1' COMPND 3 (NS1'),JAPANESE ENCEPHALITIS VIRUS NON-STRUCTURAL PROTEIN 1' (NS1'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JAPANESE ENCEPHALITIS VIRUS STRAIN SA-14; SOURCE 3 ORGANISM_TAXID: 11073; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET303 KEYWDS FLAVIVIRUS PROTEIN, NS1', JAPANESE ENCEPHALITIS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.THANALAI,G.S.A.WRIGHT,S.V.ANTONYUK REVDAT 4 17-JAN-24 5O36 1 REMARK REVDAT 3 28-MAR-18 5O36 1 JRNL REVDAT 2 31-JAN-18 5O36 1 JRNL REVDAT 1 24-JAN-18 5O36 0 JRNL AUTH T.POONSIRI,G.S.A.WRIGHT,M.S.DIAMOND,L.TURTLE,T.SOLOMON, JRNL AUTH 2 S.V.ANTONYUK JRNL TITL STRUCTURAL STUDY OF THE C-TERMINAL DOMAIN OF NONSTRUCTURAL JRNL TITL 2 PROTEIN 1 FROM JAPANESE ENCEPHALITIS VIRUS. JRNL REF J. VIROL. V. 92 2018 JRNL REFN ESSN 1098-5514 JRNL PMID 29343583 JRNL DOI 10.1128/JVI.01868-17 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 527 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 2.61000 REMARK 3 B33 (A**2) : -2.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.300 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.101 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1510 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1322 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2059 ; 1.741 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3060 ; 1.022 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ; 7.465 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;34.198 ;23.623 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 241 ;15.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.384 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 224 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1633 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 334 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 711 ; 3.104 ; 3.579 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 710 ; 3.081 ; 3.575 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 887 ; 4.849 ; 5.354 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 888 ; 4.846 ; 5.359 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 797 ; 4.753 ; 4.290 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 797 ; 4.753 ; 4.290 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1173 ; 7.164 ; 6.245 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1641 ; 9.300 ;28.910 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1642 ; 9.297 ;28.930 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10247 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 81.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 1.41300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4OIE REMARK 200 REMARK 200 REMARK: NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM SULFATE, 5% (V/V) REMARK 280 PROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.16000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.16000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.16000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.74500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.16000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.74500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -298.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.32000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 38.97000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 171 REMARK 465 ARG A 172 REMARK 465 GLU A 173 REMARK 465 GLU A 174 REMARK 465 SER A 175 REMARK 465 THR A 176 REMARK 465 GLY A 355 REMARK 465 GLU A 356 REMARK 465 MET A 357 REMARK 465 VAL A 358 REMARK 465 ASP A 359 REMARK 465 PRO A 360 REMARK 465 PHE A 361 REMARK 465 SER A 362 REMARK 465 ALA A 363 REMARK 465 GLY A 364 REMARK 465 PRO A 365 REMARK 465 SER A 366 REMARK 465 GLY A 367 REMARK 465 ASP A 368 REMARK 465 VAL A 369 REMARK 465 SER A 370 REMARK 465 GLY A 371 REMARK 465 HIS A 372 REMARK 465 PRO A 373 REMARK 465 GLY A 374 REMARK 465 SER A 375 REMARK 465 PRO A 376 REMARK 465 SER A 377 REMARK 465 GLN A 378 REMARK 465 GLU A 379 REMARK 465 VAL A 380 REMARK 465 ASP A 381 REMARK 465 GLY A 382 REMARK 465 GLN A 383 REMARK 465 ILE A 384 REMARK 465 ASP A 385 REMARK 465 HIS A 386 REMARK 465 SER A 387 REMARK 465 CYS A 388 REMARK 465 GLY A 389 REMARK 465 PHE A 390 REMARK 465 GLY A 391 REMARK 465 GLY A 392 REMARK 465 PRO A 393 REMARK 465 THR A 394 REMARK 465 CYS A 395 REMARK 465 ALA A 396 REMARK 465 ASP A 397 REMARK 465 ALA A 398 REMARK 465 TRP A 399 REMARK 465 GLY A 400 REMARK 465 TYR A 401 REMARK 465 HIS A 402 REMARK 465 LEU A 403 REMARK 465 HIS A 404 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 618 O HOH A 684 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 SO4 A 510 O1 SO4 A 510 7555 1.17 REMARK 500 O HOH A 608 O HOH A 645 7555 1.76 REMARK 500 O HOH A 604 O HOH A 604 6655 2.01 REMARK 500 O HOH A 630 O HOH A 644 8565 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 197 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 207 -76.09 -109.17 REMARK 500 GLN A 263 58.70 -91.20 REMARK 500 PRO A 296 154.48 -47.94 REMARK 500 SER A 315 38.94 -155.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue POL A 513 DBREF 5O36 A 172 361 UNP P27395 POLG_JAEV1 966 1155 DBREF 5O36 A 362 404 PDB 5O36 5O36 362 404 SEQADV 5O36 MET A 171 UNP P27395 INITIATING METHIONINE SEQRES 1 A 234 MET ARG GLU GLU SER THR ASP GLU CYS ASP GLY ALA ILE SEQRES 2 A 234 ILE GLY THR ALA VAL LYS GLY HIS VAL ALA VAL HIS SER SEQRES 3 A 234 ASP LEU SER TYR TRP ILE GLU SER ARG TYR ASN ASP THR SEQRES 4 A 234 TRP LYS LEU GLU ARG ALA VAL PHE GLY GLU VAL LYS SER SEQRES 5 A 234 CYS THR TRP PRO GLU THR HIS THR LEU TRP GLY ASP ASP SEQRES 6 A 234 VAL GLU GLU SER GLU LEU ILE ILE PRO HIS THR ILE ALA SEQRES 7 A 234 GLY PRO LYS SER LYS HIS ASN ARG ARG GLU GLY TYR LYS SEQRES 8 A 234 THR GLN ASN GLN GLY PRO TRP ASP GLU ASN GLY ILE VAL SEQRES 9 A 234 LEU ASP PHE ASP TYR CYS PRO GLY THR LYS VAL THR ILE SEQRES 10 A 234 THR GLU ASP CYS SER LYS ARG GLY PRO SER VAL ARG THR SEQRES 11 A 234 THR THR ASP SER GLY LYS LEU ILE THR ASP TRP CYS CYS SEQRES 12 A 234 ARG SER CYS SER LEU PRO PRO LEU ARG PHE ARG THR GLU SEQRES 13 A 234 ASN GLY CYS TRP TYR GLY MET GLU ILE ARG PRO VAL MET SEQRES 14 A 234 HIS ASP GLU THR THR LEU VAL ARG SER GLN VAL ASP ALA SEQRES 15 A 234 PHE LYS GLY GLU MET VAL ASP PRO PHE SER ALA GLY PRO SEQRES 16 A 234 SER GLY ASP VAL SER GLY HIS PRO GLY SER PRO SER GLN SEQRES 17 A 234 GLU VAL ASP GLY GLN ILE ASP HIS SER CYS GLY PHE GLY SEQRES 18 A 234 GLY PRO THR CYS ALA ASP ALA TRP GLY TYR HIS LEU HIS HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HET SO4 A 510 5 HET SO4 A 511 5 HET SO4 A 512 5 HET POL A 513 4 HETNAM SO4 SULFATE ION HETNAM POL N-PROPANOL HETSYN POL 1-PROPONOL FORMUL 2 SO4 12(O4 S 2-) FORMUL 14 POL C3 H8 O FORMUL 15 HOH *91(H2 O) HELIX 1 AA1 PRO A 226 THR A 230 5 5 HELIX 2 AA2 GLU A 237 LEU A 241 5 5 HELIX 3 AA3 PRO A 244 ALA A 248 5 5 SHEET 1 AA1 7 GLY A 185 LYS A 189 0 SHEET 2 AA1 7 VAL A 192 SER A 196 -1 O VAL A 194 N ALA A 187 SHEET 3 AA1 7 TYR A 200 TYR A 206 -1 O SER A 204 N ALA A 193 SHEET 4 AA1 7 TRP A 210 PHE A 217 -1 O ARG A 214 N GLU A 203 SHEET 5 AA1 7 VAL A 274 PHE A 277 -1 O LEU A 275 N ALA A 215 SHEET 6 AA1 7 LEU A 321 ARG A 324 -1 O ARG A 322 N ASP A 276 SHEET 7 AA1 7 CYS A 329 TYR A 331 -1 O TRP A 330 N PHE A 323 SHEET 1 AA2 3 LYS A 284 ILE A 287 0 SHEET 2 AA2 3 ASP A 310 CYS A 313 1 O TRP A 311 N THR A 286 SHEET 3 AA2 3 ARG A 336 VAL A 338 -1 O ARG A 336 N CYS A 312 SSBOND 1 CYS A 179 CYS A 223 1555 1555 2.11 SSBOND 2 CYS A 280 CYS A 329 1555 1555 2.18 SSBOND 3 CYS A 291 CYS A 312 1555 1555 2.11 SSBOND 4 CYS A 313 CYS A 316 1555 1555 2.15 CISPEP 1 LEU A 318 PRO A 319 0 -6.09 SITE 1 AC1 4 ARG A 347 GLN A 349 HOH A 640 HOH A 641 SITE 1 AC2 6 LYS A 261 LYS A 293 ARG A 294 SO4 A 504 SITE 2 AC2 6 HOH A 615 HOH A 650 SITE 1 AC3 5 THR A 302 SER A 304 LYS A 306 THR A 343 SITE 2 AC3 5 THR A 344 SITE 1 AC4 2 ARG A 294 SO4 A 502 SITE 1 AC5 4 THR A 224 GLU A 238 HIS A 245 LYS A 251 SITE 1 AC6 2 LYS A 253 ARG A 256 SITE 1 AC7 7 GLU A 227 TRP A 232 ASP A 234 LYS A 253 SITE 2 AC7 7 HOH A 601 HOH A 608 HOH A 645 SITE 1 AC8 5 GLU A 203 ARG A 205 GLU A 213 ARG A 214 SITE 2 AC8 5 ASN A 271 SITE 1 AC9 2 VAL A 192 VAL A 194 SITE 1 AD1 3 ASP A 234 ASP A 235 HOH A 609 SITE 1 AD2 5 GLY A 181 TRP A 210 THR A 228 HIS A 229 SITE 2 AD2 5 HOH A 643 SITE 1 AD3 2 ARG A 324 GLY A 328 SITE 1 AD4 2 GLU A 238 SER A 239 CRYST1 50.320 77.940 163.490 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006117 0.00000