data_5O38 # _entry.id 5O38 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5O38 pdb_00005o38 10.2210/pdb5o38/pdb WWPDB D_1200005030 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-14 2 'Structure model' 1 1 2018-05-16 3 'Structure model' 1 2 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_ISSN' 2 2 'Structure model' '_citation.journal_volume' 3 2 'Structure model' '_citation.page_first' 4 2 'Structure model' '_citation.page_last' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation_author.name' 9 3 'Structure model' '_database_2.pdbx_DOI' 10 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5O38 _pdbx_database_status.recvd_initial_deposition_date 2017-05-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chan, K.-H.' 1 0000-0002-6693-2682 'Runcie, A.C.' 2 ? 'Ciulli, A.' 3 0000-0002-8654-1670 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-6520 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 2452 _citation.page_last 2468 _citation.title ;Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition. ; _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c7sc02536j _citation.pdbx_database_id_PubMed 29732121 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Runcie, A.C.' 1 ? primary 'Zengerle, M.' 2 ? primary 'Chan, K.H.' 3 ? primary 'Testa, A.' 4 ? primary 'van Beurden, L.' 5 ? primary 'Baud, M.G.J.' 6 ? primary 'Epemolu, O.' 7 ? primary 'Ellis, L.C.J.' 8 ? primary 'Read, K.D.' 9 ? primary 'Coulthard, V.' 10 ? primary 'Brien, A.' 11 ? primary 'Ciulli, A.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 2' 13361.383 1 ? L383V ? ? 2 non-polymer syn '3-[(2~{R})-2-oxidanylpropoxy]-2-[[(2~{R})-2-oxidanylpropoxy]methyl]-2-[[(2~{S})-2-oxidanylpropoxy]methyl]propan-1-ol' 310.384 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn '(2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol' 134.174 1 ? ? ? ? 5 water nat water 18.015 237 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'O27.1.1,Really interesting new gene 3 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGVHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_seq_one_letter_code_can ;SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGVHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-[(2~{R})-2-oxidanylpropoxy]-2-[[(2~{R})-2-oxidanylpropoxy]methyl]-2-[[(2~{S})-2-oxidanylpropoxy]methyl]propan-1-ol' 9JB 3 'CHLORIDE ION' CL 4 '(2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol' DQW 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLY n 1 4 LYS n 1 5 LEU n 1 6 SER n 1 7 GLU n 1 8 GLN n 1 9 LEU n 1 10 LYS n 1 11 HIS n 1 12 CYS n 1 13 ASN n 1 14 GLY n 1 15 ILE n 1 16 LEU n 1 17 LYS n 1 18 GLU n 1 19 LEU n 1 20 LEU n 1 21 SER n 1 22 LYS n 1 23 LYS n 1 24 HIS n 1 25 ALA n 1 26 ALA n 1 27 TYR n 1 28 ALA n 1 29 TRP n 1 30 PRO n 1 31 PHE n 1 32 TYR n 1 33 LYS n 1 34 PRO n 1 35 VAL n 1 36 ASP n 1 37 ALA n 1 38 SER n 1 39 ALA n 1 40 LEU n 1 41 GLY n 1 42 VAL n 1 43 HIS n 1 44 ASP n 1 45 TYR n 1 46 HIS n 1 47 ASP n 1 48 ILE n 1 49 ILE n 1 50 LYS n 1 51 HIS n 1 52 PRO n 1 53 MET n 1 54 ASP n 1 55 LEU n 1 56 SER n 1 57 THR n 1 58 VAL n 1 59 LYS n 1 60 ARG n 1 61 LYS n 1 62 MET n 1 63 GLU n 1 64 ASN n 1 65 ARG n 1 66 ASP n 1 67 TYR n 1 68 ARG n 1 69 ASP n 1 70 ALA n 1 71 GLN n 1 72 GLU n 1 73 PHE n 1 74 ALA n 1 75 ALA n 1 76 ASP n 1 77 VAL n 1 78 ARG n 1 79 LEU n 1 80 MET n 1 81 PHE n 1 82 SER n 1 83 ASN n 1 84 CYS n 1 85 TYR n 1 86 LYS n 1 87 TYR n 1 88 ASN n 1 89 PRO n 1 90 PRO n 1 91 ASP n 1 92 HIS n 1 93 ASP n 1 94 VAL n 1 95 VAL n 1 96 ALA n 1 97 MET n 1 98 ALA n 1 99 ARG n 1 100 LYS n 1 101 LEU n 1 102 GLN n 1 103 ASP n 1 104 VAL n 1 105 PHE n 1 106 GLU n 1 107 PHE n 1 108 ARG n 1 109 TYR n 1 110 ALA n 1 111 LYS n 1 112 MET n 1 113 PRO n 1 114 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 114 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD2, KIAA9001, RING3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 9JB non-polymer . '3-[(2~{R})-2-oxidanylpropoxy]-2-[[(2~{R})-2-oxidanylpropoxy]methyl]-2-[[(2~{S})-2-oxidanylpropoxy]methyl]propan-1-ol' ? 'C14 H30 O7' 310.384 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DQW non-polymer . '(2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol' ? 'C6 H14 O3' 134.174 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 342 ? ? ? A . n A 1 2 MET 2 343 343 MET MET A . n A 1 3 GLY 3 344 344 GLY GLY A . n A 1 4 LYS 4 345 345 LYS LYS A . n A 1 5 LEU 5 346 346 LEU LEU A . n A 1 6 SER 6 347 347 SER SER A . n A 1 7 GLU 7 348 348 GLU GLU A . n A 1 8 GLN 8 349 349 GLN GLN A . n A 1 9 LEU 9 350 350 LEU LEU A . n A 1 10 LYS 10 351 351 LYS LYS A . n A 1 11 HIS 11 352 352 HIS HIS A . n A 1 12 CYS 12 353 353 CYS CYS A . n A 1 13 ASN 13 354 354 ASN ASN A . n A 1 14 GLY 14 355 355 GLY GLY A . n A 1 15 ILE 15 356 356 ILE ILE A . n A 1 16 LEU 16 357 357 LEU LEU A . n A 1 17 LYS 17 358 358 LYS LYS A . n A 1 18 GLU 18 359 359 GLU GLU A . n A 1 19 LEU 19 360 360 LEU LEU A . n A 1 20 LEU 20 361 361 LEU LEU A . n A 1 21 SER 21 362 362 SER SER A . n A 1 22 LYS 22 363 363 LYS LYS A . n A 1 23 LYS 23 364 364 LYS LYS A . n A 1 24 HIS 24 365 365 HIS HIS A . n A 1 25 ALA 25 366 366 ALA ALA A . n A 1 26 ALA 26 367 367 ALA ALA A . n A 1 27 TYR 27 368 368 TYR TYR A . n A 1 28 ALA 28 369 369 ALA ALA A . n A 1 29 TRP 29 370 370 TRP TRP A . n A 1 30 PRO 30 371 371 PRO PRO A . n A 1 31 PHE 31 372 372 PHE PHE A . n A 1 32 TYR 32 373 373 TYR TYR A . n A 1 33 LYS 33 374 374 LYS LYS A . n A 1 34 PRO 34 375 375 PRO PRO A . n A 1 35 VAL 35 376 376 VAL VAL A . n A 1 36 ASP 36 377 377 ASP ASP A . n A 1 37 ALA 37 378 378 ALA ALA A . n A 1 38 SER 38 379 379 SER SER A . n A 1 39 ALA 39 380 380 ALA ALA A . n A 1 40 LEU 40 381 381 LEU LEU A . n A 1 41 GLY 41 382 382 GLY GLY A . n A 1 42 VAL 42 383 383 VAL VAL A . n A 1 43 HIS 43 384 384 HIS HIS A . n A 1 44 ASP 44 385 385 ASP ASP A . n A 1 45 TYR 45 386 386 TYR TYR A . n A 1 46 HIS 46 387 387 HIS HIS A . n A 1 47 ASP 47 388 388 ASP ASP A . n A 1 48 ILE 48 389 389 ILE ILE A . n A 1 49 ILE 49 390 390 ILE ILE A . n A 1 50 LYS 50 391 391 LYS LYS A . n A 1 51 HIS 51 392 392 HIS HIS A . n A 1 52 PRO 52 393 393 PRO PRO A . n A 1 53 MET 53 394 394 MET MET A . n A 1 54 ASP 54 395 395 ASP ASP A . n A 1 55 LEU 55 396 396 LEU LEU A . n A 1 56 SER 56 397 397 SER SER A . n A 1 57 THR 57 398 398 THR THR A . n A 1 58 VAL 58 399 399 VAL VAL A . n A 1 59 LYS 59 400 400 LYS LYS A . n A 1 60 ARG 60 401 401 ARG ARG A . n A 1 61 LYS 61 402 402 LYS LYS A . n A 1 62 MET 62 403 403 MET MET A . n A 1 63 GLU 63 404 404 GLU GLU A . n A 1 64 ASN 64 405 405 ASN ASN A . n A 1 65 ARG 65 406 406 ARG ARG A . n A 1 66 ASP 66 407 407 ASP ASP A . n A 1 67 TYR 67 408 408 TYR TYR A . n A 1 68 ARG 68 409 409 ARG ARG A . n A 1 69 ASP 69 410 410 ASP ASP A . n A 1 70 ALA 70 411 411 ALA ALA A . n A 1 71 GLN 71 412 412 GLN GLN A . n A 1 72 GLU 72 413 413 GLU GLU A . n A 1 73 PHE 73 414 414 PHE PHE A . n A 1 74 ALA 74 415 415 ALA ALA A . n A 1 75 ALA 75 416 416 ALA ALA A . n A 1 76 ASP 76 417 417 ASP ASP A . n A 1 77 VAL 77 418 418 VAL VAL A . n A 1 78 ARG 78 419 419 ARG ARG A . n A 1 79 LEU 79 420 420 LEU LEU A . n A 1 80 MET 80 421 421 MET MET A . n A 1 81 PHE 81 422 422 PHE PHE A . n A 1 82 SER 82 423 423 SER SER A . n A 1 83 ASN 83 424 424 ASN ASN A . n A 1 84 CYS 84 425 425 CYS CYS A . n A 1 85 TYR 85 426 426 TYR TYR A . n A 1 86 LYS 86 427 427 LYS LYS A . n A 1 87 TYR 87 428 428 TYR TYR A . n A 1 88 ASN 88 429 429 ASN ASN A . n A 1 89 PRO 89 430 430 PRO PRO A . n A 1 90 PRO 90 431 431 PRO PRO A . n A 1 91 ASP 91 432 432 ASP ASP A . n A 1 92 HIS 92 433 433 HIS HIS A . n A 1 93 ASP 93 434 434 ASP ASP A . n A 1 94 VAL 94 435 435 VAL VAL A . n A 1 95 VAL 95 436 436 VAL VAL A . n A 1 96 ALA 96 437 437 ALA ALA A . n A 1 97 MET 97 438 438 MET MET A . n A 1 98 ALA 98 439 439 ALA ALA A . n A 1 99 ARG 99 440 440 ARG ARG A . n A 1 100 LYS 100 441 441 LYS LYS A . n A 1 101 LEU 101 442 442 LEU LEU A . n A 1 102 GLN 102 443 443 GLN GLN A . n A 1 103 ASP 103 444 444 ASP ASP A . n A 1 104 VAL 104 445 445 VAL VAL A . n A 1 105 PHE 105 446 446 PHE PHE A . n A 1 106 GLU 106 447 447 GLU GLU A . n A 1 107 PHE 107 448 448 PHE PHE A . n A 1 108 ARG 108 449 449 ARG ARG A . n A 1 109 TYR 109 450 450 TYR TYR A . n A 1 110 ALA 110 451 451 ALA ALA A . n A 1 111 LYS 111 452 452 LYS LYS A . n A 1 112 MET 112 453 453 MET MET A . n A 1 113 PRO 113 454 454 PRO PRO A . n A 1 114 ASP 114 455 455 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9JB 1 501 1 9JB PEP A . C 3 CL 1 502 1 CL CL A . D 4 DQW 1 503 1 DQW DPG A . E 5 HOH 1 601 233 HOH HOH A . E 5 HOH 2 602 234 HOH HOH A . E 5 HOH 3 603 229 HOH HOH A . E 5 HOH 4 604 154 HOH HOH A . E 5 HOH 5 605 131 HOH HOH A . E 5 HOH 6 606 239 HOH HOH A . E 5 HOH 7 607 199 HOH HOH A . E 5 HOH 8 608 107 HOH HOH A . E 5 HOH 9 609 108 HOH HOH A . E 5 HOH 10 610 103 HOH HOH A . E 5 HOH 11 611 44 HOH HOH A . E 5 HOH 12 612 54 HOH HOH A . E 5 HOH 13 613 173 HOH HOH A . E 5 HOH 14 614 2 HOH HOH A . E 5 HOH 15 615 182 HOH HOH A . E 5 HOH 16 616 4 HOH HOH A . E 5 HOH 17 617 189 HOH HOH A . E 5 HOH 18 618 192 HOH HOH A . E 5 HOH 19 619 143 HOH HOH A . E 5 HOH 20 620 208 HOH HOH A . E 5 HOH 21 621 37 HOH HOH A . E 5 HOH 22 622 30 HOH HOH A . E 5 HOH 23 623 116 HOH HOH A . E 5 HOH 24 624 31 HOH HOH A . E 5 HOH 25 625 146 HOH HOH A . E 5 HOH 26 626 113 HOH HOH A . E 5 HOH 27 627 138 HOH HOH A . E 5 HOH 28 628 77 HOH HOH A . E 5 HOH 29 629 87 HOH HOH A . E 5 HOH 30 630 8 HOH HOH A . E 5 HOH 31 631 21 HOH HOH A . E 5 HOH 32 632 130 HOH HOH A . E 5 HOH 33 633 119 HOH HOH A . E 5 HOH 34 634 1 HOH HOH A . E 5 HOH 35 635 153 HOH HOH A . E 5 HOH 36 636 129 HOH HOH A . E 5 HOH 37 637 90 HOH HOH A . E 5 HOH 38 638 47 HOH HOH A . E 5 HOH 39 639 65 HOH HOH A . E 5 HOH 40 640 41 HOH HOH A . E 5 HOH 41 641 125 HOH HOH A . E 5 HOH 42 642 91 HOH HOH A . E 5 HOH 43 643 193 HOH HOH A . E 5 HOH 44 644 225 HOH HOH A . E 5 HOH 45 645 162 HOH HOH A . E 5 HOH 46 646 28 HOH HOH A . E 5 HOH 47 647 15 HOH HOH A . E 5 HOH 48 648 96 HOH HOH A . E 5 HOH 49 649 24 HOH HOH A . E 5 HOH 50 650 68 HOH HOH A . E 5 HOH 51 651 9 HOH HOH A . E 5 HOH 52 652 39 HOH HOH A . E 5 HOH 53 653 32 HOH HOH A . E 5 HOH 54 654 64 HOH HOH A . E 5 HOH 55 655 104 HOH HOH A . E 5 HOH 56 656 114 HOH HOH A . E 5 HOH 57 657 13 HOH HOH A . E 5 HOH 58 658 48 HOH HOH A . E 5 HOH 59 659 183 HOH HOH A . E 5 HOH 60 660 102 HOH HOH A . E 5 HOH 61 661 6 HOH HOH A . E 5 HOH 62 662 3 HOH HOH A . E 5 HOH 63 663 14 HOH HOH A . E 5 HOH 64 664 109 HOH HOH A . E 5 HOH 65 665 118 HOH HOH A . E 5 HOH 66 666 20 HOH HOH A . E 5 HOH 67 667 69 HOH HOH A . E 5 HOH 68 668 38 HOH HOH A . E 5 HOH 69 669 60 HOH HOH A . E 5 HOH 70 670 56 HOH HOH A . E 5 HOH 71 671 26 HOH HOH A . E 5 HOH 72 672 85 HOH HOH A . E 5 HOH 73 673 157 HOH HOH A . E 5 HOH 74 674 49 HOH HOH A . E 5 HOH 75 675 52 HOH HOH A . E 5 HOH 76 676 212 HOH HOH A . E 5 HOH 77 677 163 HOH HOH A . E 5 HOH 78 678 124 HOH HOH A . E 5 HOH 79 679 100 HOH HOH A . E 5 HOH 80 680 195 HOH HOH A . E 5 HOH 81 681 16 HOH HOH A . E 5 HOH 82 682 106 HOH HOH A . E 5 HOH 83 683 99 HOH HOH A . E 5 HOH 84 684 29 HOH HOH A . E 5 HOH 85 685 50 HOH HOH A . E 5 HOH 86 686 76 HOH HOH A . E 5 HOH 87 687 175 HOH HOH A . E 5 HOH 88 688 88 HOH HOH A . E 5 HOH 89 689 10 HOH HOH A . E 5 HOH 90 690 145 HOH HOH A . E 5 HOH 91 691 128 HOH HOH A . E 5 HOH 92 692 19 HOH HOH A . E 5 HOH 93 693 110 HOH HOH A . E 5 HOH 94 694 105 HOH HOH A . E 5 HOH 95 695 149 HOH HOH A . E 5 HOH 96 696 36 HOH HOH A . E 5 HOH 97 697 159 HOH HOH A . E 5 HOH 98 698 95 HOH HOH A . E 5 HOH 99 699 63 HOH HOH A . E 5 HOH 100 700 23 HOH HOH A . E 5 HOH 101 701 22 HOH HOH A . E 5 HOH 102 702 200 HOH HOH A . E 5 HOH 103 703 89 HOH HOH A . E 5 HOH 104 704 33 HOH HOH A . E 5 HOH 105 705 18 HOH HOH A . E 5 HOH 106 706 62 HOH HOH A . E 5 HOH 107 707 5 HOH HOH A . E 5 HOH 108 708 81 HOH HOH A . E 5 HOH 109 709 111 HOH HOH A . E 5 HOH 110 710 51 HOH HOH A . E 5 HOH 111 711 238 HOH HOH A . E 5 HOH 112 712 67 HOH HOH A . E 5 HOH 113 713 115 HOH HOH A . E 5 HOH 114 714 169 HOH HOH A . E 5 HOH 115 715 27 HOH HOH A . E 5 HOH 116 716 228 HOH HOH A . E 5 HOH 117 717 194 HOH HOH A . E 5 HOH 118 718 7 HOH HOH A . E 5 HOH 119 719 97 HOH HOH A . E 5 HOH 120 720 46 HOH HOH A . E 5 HOH 121 721 83 HOH HOH A . E 5 HOH 122 722 185 HOH HOH A . E 5 HOH 123 723 75 HOH HOH A . E 5 HOH 124 724 178 HOH HOH A . E 5 HOH 125 725 45 HOH HOH A . E 5 HOH 126 726 58 HOH HOH A . E 5 HOH 127 727 179 HOH HOH A . E 5 HOH 128 728 211 HOH HOH A . E 5 HOH 129 729 166 HOH HOH A . E 5 HOH 130 730 121 HOH HOH A . E 5 HOH 131 731 170 HOH HOH A . E 5 HOH 132 732 184 HOH HOH A . E 5 HOH 133 733 70 HOH HOH A . E 5 HOH 134 734 40 HOH HOH A . E 5 HOH 135 735 93 HOH HOH A . E 5 HOH 136 736 78 HOH HOH A . E 5 HOH 137 737 53 HOH HOH A . E 5 HOH 138 738 86 HOH HOH A . E 5 HOH 139 739 11 HOH HOH A . E 5 HOH 140 740 237 HOH HOH A . E 5 HOH 141 741 59 HOH HOH A . E 5 HOH 142 742 165 HOH HOH A . E 5 HOH 143 743 35 HOH HOH A . E 5 HOH 144 744 197 HOH HOH A . E 5 HOH 145 745 126 HOH HOH A . E 5 HOH 146 746 155 HOH HOH A . E 5 HOH 147 747 220 HOH HOH A . E 5 HOH 148 748 17 HOH HOH A . E 5 HOH 149 749 191 HOH HOH A . E 5 HOH 150 750 236 HOH HOH A . E 5 HOH 151 751 139 HOH HOH A . E 5 HOH 152 752 231 HOH HOH A . E 5 HOH 153 753 55 HOH HOH A . E 5 HOH 154 754 210 HOH HOH A . E 5 HOH 155 755 92 HOH HOH A . E 5 HOH 156 756 230 HOH HOH A . E 5 HOH 157 757 171 HOH HOH A . E 5 HOH 158 758 226 HOH HOH A . E 5 HOH 159 759 120 HOH HOH A . E 5 HOH 160 760 206 HOH HOH A . E 5 HOH 161 761 151 HOH HOH A . E 5 HOH 162 762 135 HOH HOH A . E 5 HOH 163 763 164 HOH HOH A . E 5 HOH 164 764 117 HOH HOH A . E 5 HOH 165 765 140 HOH HOH A . E 5 HOH 166 766 201 HOH HOH A . E 5 HOH 167 767 57 HOH HOH A . E 5 HOH 168 768 241 HOH HOH A . E 5 HOH 169 769 122 HOH HOH A . E 5 HOH 170 770 152 HOH HOH A . E 5 HOH 171 771 207 HOH HOH A . E 5 HOH 172 772 176 HOH HOH A . E 5 HOH 173 773 217 HOH HOH A . E 5 HOH 174 774 61 HOH HOH A . E 5 HOH 175 775 12 HOH HOH A . E 5 HOH 176 776 147 HOH HOH A . E 5 HOH 177 777 112 HOH HOH A . E 5 HOH 178 778 218 HOH HOH A . E 5 HOH 179 779 80 HOH HOH A . E 5 HOH 180 780 172 HOH HOH A . E 5 HOH 181 781 82 HOH HOH A . E 5 HOH 182 782 84 HOH HOH A . E 5 HOH 183 783 43 HOH HOH A . E 5 HOH 184 784 168 HOH HOH A . E 5 HOH 185 785 227 HOH HOH A . E 5 HOH 186 786 223 HOH HOH A . E 5 HOH 187 787 72 HOH HOH A . E 5 HOH 188 788 142 HOH HOH A . E 5 HOH 189 789 34 HOH HOH A . E 5 HOH 190 790 134 HOH HOH A . E 5 HOH 191 791 25 HOH HOH A . E 5 HOH 192 792 222 HOH HOH A . E 5 HOH 193 793 202 HOH HOH A . E 5 HOH 194 794 123 HOH HOH A . E 5 HOH 195 795 214 HOH HOH A . E 5 HOH 196 796 190 HOH HOH A . E 5 HOH 197 797 221 HOH HOH A . E 5 HOH 198 798 160 HOH HOH A . E 5 HOH 199 799 71 HOH HOH A . E 5 HOH 200 800 127 HOH HOH A . E 5 HOH 201 801 187 HOH HOH A . E 5 HOH 202 802 79 HOH HOH A . E 5 HOH 203 803 141 HOH HOH A . E 5 HOH 204 804 198 HOH HOH A . E 5 HOH 205 805 156 HOH HOH A . E 5 HOH 206 806 150 HOH HOH A . E 5 HOH 207 807 215 HOH HOH A . E 5 HOH 208 808 203 HOH HOH A . E 5 HOH 209 809 219 HOH HOH A . E 5 HOH 210 810 204 HOH HOH A . E 5 HOH 211 811 186 HOH HOH A . E 5 HOH 212 812 136 HOH HOH A . E 5 HOH 213 813 148 HOH HOH A . E 5 HOH 214 814 133 HOH HOH A . E 5 HOH 215 815 216 HOH HOH A . E 5 HOH 216 816 98 HOH HOH A . E 5 HOH 217 817 42 HOH HOH A . E 5 HOH 218 818 144 HOH HOH A . E 5 HOH 219 819 213 HOH HOH A . E 5 HOH 220 820 161 HOH HOH A . E 5 HOH 221 821 94 HOH HOH A . E 5 HOH 222 822 167 HOH HOH A . E 5 HOH 223 823 74 HOH HOH A . E 5 HOH 224 824 181 HOH HOH A . E 5 HOH 225 825 73 HOH HOH A . E 5 HOH 226 826 235 HOH HOH A . E 5 HOH 227 827 101 HOH HOH A . E 5 HOH 228 828 240 HOH HOH A . E 5 HOH 229 829 158 HOH HOH A . E 5 HOH 230 830 209 HOH HOH A . E 5 HOH 231 831 180 HOH HOH A . E 5 HOH 232 832 224 HOH HOH A . E 5 HOH 233 833 66 HOH HOH A . E 5 HOH 234 834 132 HOH HOH A . E 5 HOH 235 835 205 HOH HOH A . E 5 HOH 236 836 137 HOH HOH A . E 5 HOH 237 837 177 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.entry_id 5O38 _cell.length_a 52.420 _cell.length_b 71.409 _cell.length_c 31.969 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O38 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5O38 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1M Tris pH8.0 50% Pentaerythritol propoxylate (5/4 PO/OH) 0.2M Imidazole ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-11-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9174 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9174 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5O38 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.2 _reflns.d_resolution_low 19.5 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 37657 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.26 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.0 _reflns.pdbx_Rmerge_I_obs 0.02237 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.57 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.2 _reflns_shell.d_res_low 1.243 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 6.62 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3520 _reflns_shell.percent_possible_all 93.37 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.08386 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 1.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.974 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5O38 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 37657 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.499 _refine.ls_d_res_high 1.200 _refine.ls_percent_reflns_obs 98.26 _refine.ls_R_factor_obs 0.1189 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1178 _refine.ls_R_factor_R_free 0.1413 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.87 _refine.ls_number_reflns_R_free 1833 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 4QEU _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.08 _refine.pdbx_overall_phase_error 11.14 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 930 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 237 _refine_hist.number_atoms_total 1198 _refine_hist.d_res_high 1.200 _refine_hist.d_res_low 19.499 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 1055 'X-RAY DIFFRACTION' ? f_angle_d 1.030 ? ? 1429 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 10.751 ? ? 427 'X-RAY DIFFRACTION' ? f_chiral_restr 0.076 ? ? 146 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 182 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.2000 1.2325 2551 0.1081 92.00 0.1298 . . 130 . . 'X-RAY DIFFRACTION' . 1.2325 1.2687 2646 0.0986 97.00 0.1383 . . 152 . . 'X-RAY DIFFRACTION' . 1.2687 1.3097 2693 0.0982 98.00 0.1475 . . 152 . . 'X-RAY DIFFRACTION' . 1.3097 1.3565 2730 0.0980 99.00 0.1394 . . 125 . . 'X-RAY DIFFRACTION' . 1.3565 1.4108 2772 0.0971 99.00 0.1399 . . 139 . . 'X-RAY DIFFRACTION' . 1.4108 1.4749 2789 0.0965 99.00 0.1320 . . 118 . . 'X-RAY DIFFRACTION' . 1.4749 1.5527 2739 0.0921 99.00 0.1273 . . 134 . . 'X-RAY DIFFRACTION' . 1.5527 1.6499 2795 0.0933 100.00 0.1222 . . 132 . . 'X-RAY DIFFRACTION' . 1.6499 1.7772 2771 0.1041 100.00 0.1279 . . 158 . . 'X-RAY DIFFRACTION' . 1.7772 1.9559 2804 0.1143 99.00 0.1446 . . 130 . . 'X-RAY DIFFRACTION' . 1.9559 2.2386 2767 0.1168 98.00 0.1133 . . 143 . . 'X-RAY DIFFRACTION' . 2.2386 2.8190 2852 0.1394 100.00 0.1366 . . 140 . . 'X-RAY DIFFRACTION' . 2.8190 19.5012 2915 0.1411 98.00 0.1720 . . 180 . . # _struct.entry_id 5O38 _struct.title 'Human Brd2(BD2) mutant in free form' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5O38 _struct_keywords.text 'The Bromodomain and Extra-Terminal Domain (BET) Family Chromatin binding protein, transcription' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD2_HUMAN _struct_ref.pdbx_db_accession P25440 _struct_ref.pdbx_db_isoform P25440-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFS NCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _struct_ref.pdbx_align_begin 344 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5O38 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P25440 _struct_ref_seq.db_align_beg 344 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 455 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 344 _struct_ref_seq.pdbx_auth_seq_align_end 455 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5O38 SER A 1 ? UNP P25440 ? ? 'expression tag' 342 1 1 5O38 MET A 2 ? UNP P25440 ? ? 'expression tag' 343 2 1 5O38 VAL A 42 ? UNP P25440 LEU 383 'engineered mutation' 383 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6410 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 6 ? LEU A 20 ? SER A 347 LEU A 361 1 ? 15 HELX_P HELX_P2 AA2 SER A 21 ? LYS A 23 ? SER A 362 LYS A 364 5 ? 3 HELX_P HELX_P3 AA3 HIS A 24 ? TRP A 29 ? HIS A 365 TRP A 370 1 ? 6 HELX_P HELX_P4 AA4 PRO A 30 ? TYR A 32 ? PRO A 371 TYR A 373 5 ? 3 HELX_P HELX_P5 AA5 ASP A 36 ? GLY A 41 ? ASP A 377 GLY A 382 1 ? 6 HELX_P HELX_P6 AA6 ASP A 44 ? ILE A 49 ? ASP A 385 ILE A 390 1 ? 6 HELX_P HELX_P7 AA7 ASP A 54 ? ASN A 64 ? ASP A 395 ASN A 405 1 ? 11 HELX_P HELX_P8 AA8 ASP A 69 ? ASN A 88 ? ASP A 410 ASN A 429 1 ? 20 HELX_P HELX_P9 AA9 HIS A 92 ? ALA A 110 ? HIS A 433 ALA A 451 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 9JB 501 ? 8 'binding site for residue 9JB A 501' AC2 Software A CL 502 ? 4 'binding site for residue CL A 502' AC3 Software A DQW 503 ? 10 'binding site for residue DQW A 503' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TRP A 29 ? TRP A 370 . ? 1_555 ? 2 AC1 8 PRO A 30 ? PRO A 371 . ? 1_555 ? 3 AC1 8 PHE A 31 ? PHE A 372 . ? 1_555 ? 4 AC1 8 ASN A 88 ? ASN A 429 . ? 1_555 ? 5 AC1 8 VAL A 94 ? VAL A 435 . ? 1_555 ? 6 AC1 8 HOH E . ? HOH A 620 . ? 1_555 ? 7 AC1 8 HOH E . ? HOH A 698 . ? 1_555 ? 8 AC1 8 HOH E . ? HOH A 830 . ? 3_445 ? 9 AC2 4 ARG A 78 ? ARG A 419 . ? 2_555 ? 10 AC2 4 ARG A 78 ? ARG A 419 . ? 1_555 ? 11 AC2 4 HOH E . ? HOH A 657 . ? 1_555 ? 12 AC2 4 HOH E . ? HOH A 657 . ? 2_555 ? 13 AC3 10 TYR A 85 ? TYR A 426 . ? 2_555 ? 14 AC3 10 TYR A 85 ? TYR A 426 . ? 1_555 ? 15 AC3 10 ARG A 99 ? ARG A 440 . ? 2_555 ? 16 AC3 10 ARG A 99 ? ARG A 440 . ? 1_555 ? 17 AC3 10 GLN A 102 ? GLN A 443 . ? 1_555 ? 18 AC3 10 ASP A 103 ? ASP A 444 . ? 2_555 ? 19 AC3 10 ASP A 103 ? ASP A 444 . ? 1_555 ? 20 AC3 10 GLU A 106 ? GLU A 447 . ? 2_555 ? 21 AC3 10 GLU A 106 ? GLU A 447 . ? 1_555 ? 22 AC3 10 HOH E . ? HOH A 618 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 710 ? ? O A HOH 801 ? ? 2.08 2 1 O A HOH 635 ? ? O A HOH 808 ? ? 2.15 3 1 NZ A LYS 427 ? B O A HOH 601 ? ? 2.17 4 1 O A HOH 612 ? ? O A HOH 785 ? ? 2.17 5 1 NH1 A ARG 440 ? B O A HOH 602 ? ? 2.18 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CL 502 ? C CL . 2 1 A HOH 836 ? E HOH . # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 834 ? 6.05 . 2 1 O ? A HOH 835 ? 6.13 . 3 1 O ? A HOH 836 ? 6.38 . 4 1 O ? A HOH 837 ? 6.69 . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 342 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 9JB CAA C N N 1 9JB CAB C N N 2 9JB CAC C N N 3 9JB OAD O N N 4 9JB CAE C N N 5 9JB CAF C N R 6 9JB OAG O N N 7 9JB OAH O N N 8 9JB CAI C N R 9 9JB CAJ C N N 10 9JB OAK O N N 11 9JB CAL C N N 12 9JB CAM C N N 13 9JB CAN C N N 14 9JB OAO O N N 15 9JB OAS O N N 16 9JB CAT C N S 17 9JB CAU C N N 18 9JB OAV O N N 19 9JB CAW C N N 20 9JB CAY C N N 21 9JB HAAA H N N 22 9JB HAA H N N 23 9JB HAAB H N N 24 9JB HABB H N N 25 9JB HABA H N N 26 9JB HAB H N N 27 9JB HACA H N N 28 9JB HAC H N N 29 9JB HAE H N N 30 9JB HAEA H N N 31 9JB HAF H N N 32 9JB HOAG H N N 33 9JB HOAH H N N 34 9JB HAI H N N 35 9JB HAJ H N N 36 9JB HAJA H N N 37 9JB HAL H N N 38 9JB HALA H N N 39 9JB HANA H N N 40 9JB HAN H N N 41 9JB HA4 H N N 42 9JB HOAS H N N 43 9JB HAT H N N 44 9JB HAU H N N 45 9JB HAUA H N N 46 9JB HAW H N N 47 9JB HAWA H N N 48 9JB HAYB H N N 49 9JB HAY H N N 50 9JB HAYA H N N 51 ALA N N N N 52 ALA CA C N S 53 ALA C C N N 54 ALA O O N N 55 ALA CB C N N 56 ALA OXT O N N 57 ALA H H N N 58 ALA H2 H N N 59 ALA HA H N N 60 ALA HB1 H N N 61 ALA HB2 H N N 62 ALA HB3 H N N 63 ALA HXT H N N 64 ARG N N N N 65 ARG CA C N S 66 ARG C C N N 67 ARG O O N N 68 ARG CB C N N 69 ARG CG C N N 70 ARG CD C N N 71 ARG NE N N N 72 ARG CZ C N N 73 ARG NH1 N N N 74 ARG NH2 N N N 75 ARG OXT O N N 76 ARG H H N N 77 ARG H2 H N N 78 ARG HA H N N 79 ARG HB2 H N N 80 ARG HB3 H N N 81 ARG HG2 H N N 82 ARG HG3 H N N 83 ARG HD2 H N N 84 ARG HD3 H N N 85 ARG HE H N N 86 ARG HH11 H N N 87 ARG HH12 H N N 88 ARG HH21 H N N 89 ARG HH22 H N N 90 ARG HXT H N N 91 ASN N N N N 92 ASN CA C N S 93 ASN C C N N 94 ASN O O N N 95 ASN CB C N N 96 ASN CG C N N 97 ASN OD1 O N N 98 ASN ND2 N N N 99 ASN OXT O N N 100 ASN H H N N 101 ASN H2 H N N 102 ASN HA H N N 103 ASN HB2 H N N 104 ASN HB3 H N N 105 ASN HD21 H N N 106 ASN HD22 H N N 107 ASN HXT H N N 108 ASP N N N N 109 ASP CA C N S 110 ASP C C N N 111 ASP O O N N 112 ASP CB C N N 113 ASP CG C N N 114 ASP OD1 O N N 115 ASP OD2 O N N 116 ASP OXT O N N 117 ASP H H N N 118 ASP H2 H N N 119 ASP HA H N N 120 ASP HB2 H N N 121 ASP HB3 H N N 122 ASP HD2 H N N 123 ASP HXT H N N 124 CL CL CL N N 125 CYS N N N N 126 CYS CA C N R 127 CYS C C N N 128 CYS O O N N 129 CYS CB C N N 130 CYS SG S N N 131 CYS OXT O N N 132 CYS H H N N 133 CYS H2 H N N 134 CYS HA H N N 135 CYS HB2 H N N 136 CYS HB3 H N N 137 CYS HG H N N 138 CYS HXT H N N 139 DQW CAD C N N 140 DQW CAB C N S 141 DQW OAA O N N 142 DQW CAC C N N 143 DQW OAE O N N 144 DQW CAF C N N 145 DQW CAG C N S 146 DQW CAI C N N 147 DQW OAH O N N 148 DQW HAG H N N 149 DQW HAE H N N 150 DQW HAF H N N 151 DQW HAB H N N 152 DQW HAA H N N 153 DQW HAC H N N 154 DQW HAD H N N 155 DQW HAI H N N 156 DQW HAH H N N 157 DQW HAJ H N N 158 DQW HAL H N N 159 DQW HAM H N N 160 DQW HAK H N N 161 DQW HAN H N N 162 GLN N N N N 163 GLN CA C N S 164 GLN C C N N 165 GLN O O N N 166 GLN CB C N N 167 GLN CG C N N 168 GLN CD C N N 169 GLN OE1 O N N 170 GLN NE2 N N N 171 GLN OXT O N N 172 GLN H H N N 173 GLN H2 H N N 174 GLN HA H N N 175 GLN HB2 H N N 176 GLN HB3 H N N 177 GLN HG2 H N N 178 GLN HG3 H N N 179 GLN HE21 H N N 180 GLN HE22 H N N 181 GLN HXT H N N 182 GLU N N N N 183 GLU CA C N S 184 GLU C C N N 185 GLU O O N N 186 GLU CB C N N 187 GLU CG C N N 188 GLU CD C N N 189 GLU OE1 O N N 190 GLU OE2 O N N 191 GLU OXT O N N 192 GLU H H N N 193 GLU H2 H N N 194 GLU HA H N N 195 GLU HB2 H N N 196 GLU HB3 H N N 197 GLU HG2 H N N 198 GLU HG3 H N N 199 GLU HE2 H N N 200 GLU HXT H N N 201 GLY N N N N 202 GLY CA C N N 203 GLY C C N N 204 GLY O O N N 205 GLY OXT O N N 206 GLY H H N N 207 GLY H2 H N N 208 GLY HA2 H N N 209 GLY HA3 H N N 210 GLY HXT H N N 211 HIS N N N N 212 HIS CA C N S 213 HIS C C N N 214 HIS O O N N 215 HIS CB C N N 216 HIS CG C Y N 217 HIS ND1 N Y N 218 HIS CD2 C Y N 219 HIS CE1 C Y N 220 HIS NE2 N Y N 221 HIS OXT O N N 222 HIS H H N N 223 HIS H2 H N N 224 HIS HA H N N 225 HIS HB2 H N N 226 HIS HB3 H N N 227 HIS HD1 H N N 228 HIS HD2 H N N 229 HIS HE1 H N N 230 HIS HE2 H N N 231 HIS HXT H N N 232 HOH O O N N 233 HOH H1 H N N 234 HOH H2 H N N 235 ILE N N N N 236 ILE CA C N S 237 ILE C C N N 238 ILE O O N N 239 ILE CB C N S 240 ILE CG1 C N N 241 ILE CG2 C N N 242 ILE CD1 C N N 243 ILE OXT O N N 244 ILE H H N N 245 ILE H2 H N N 246 ILE HA H N N 247 ILE HB H N N 248 ILE HG12 H N N 249 ILE HG13 H N N 250 ILE HG21 H N N 251 ILE HG22 H N N 252 ILE HG23 H N N 253 ILE HD11 H N N 254 ILE HD12 H N N 255 ILE HD13 H N N 256 ILE HXT H N N 257 LEU N N N N 258 LEU CA C N S 259 LEU C C N N 260 LEU O O N N 261 LEU CB C N N 262 LEU CG C N N 263 LEU CD1 C N N 264 LEU CD2 C N N 265 LEU OXT O N N 266 LEU H H N N 267 LEU H2 H N N 268 LEU HA H N N 269 LEU HB2 H N N 270 LEU HB3 H N N 271 LEU HG H N N 272 LEU HD11 H N N 273 LEU HD12 H N N 274 LEU HD13 H N N 275 LEU HD21 H N N 276 LEU HD22 H N N 277 LEU HD23 H N N 278 LEU HXT H N N 279 LYS N N N N 280 LYS CA C N S 281 LYS C C N N 282 LYS O O N N 283 LYS CB C N N 284 LYS CG C N N 285 LYS CD C N N 286 LYS CE C N N 287 LYS NZ N N N 288 LYS OXT O N N 289 LYS H H N N 290 LYS H2 H N N 291 LYS HA H N N 292 LYS HB2 H N N 293 LYS HB3 H N N 294 LYS HG2 H N N 295 LYS HG3 H N N 296 LYS HD2 H N N 297 LYS HD3 H N N 298 LYS HE2 H N N 299 LYS HE3 H N N 300 LYS HZ1 H N N 301 LYS HZ2 H N N 302 LYS HZ3 H N N 303 LYS HXT H N N 304 MET N N N N 305 MET CA C N S 306 MET C C N N 307 MET O O N N 308 MET CB C N N 309 MET CG C N N 310 MET SD S N N 311 MET CE C N N 312 MET OXT O N N 313 MET H H N N 314 MET H2 H N N 315 MET HA H N N 316 MET HB2 H N N 317 MET HB3 H N N 318 MET HG2 H N N 319 MET HG3 H N N 320 MET HE1 H N N 321 MET HE2 H N N 322 MET HE3 H N N 323 MET HXT H N N 324 PHE N N N N 325 PHE CA C N S 326 PHE C C N N 327 PHE O O N N 328 PHE CB C N N 329 PHE CG C Y N 330 PHE CD1 C Y N 331 PHE CD2 C Y N 332 PHE CE1 C Y N 333 PHE CE2 C Y N 334 PHE CZ C Y N 335 PHE OXT O N N 336 PHE H H N N 337 PHE H2 H N N 338 PHE HA H N N 339 PHE HB2 H N N 340 PHE HB3 H N N 341 PHE HD1 H N N 342 PHE HD2 H N N 343 PHE HE1 H N N 344 PHE HE2 H N N 345 PHE HZ H N N 346 PHE HXT H N N 347 PRO N N N N 348 PRO CA C N S 349 PRO C C N N 350 PRO O O N N 351 PRO CB C N N 352 PRO CG C N N 353 PRO CD C N N 354 PRO OXT O N N 355 PRO H H N N 356 PRO HA H N N 357 PRO HB2 H N N 358 PRO HB3 H N N 359 PRO HG2 H N N 360 PRO HG3 H N N 361 PRO HD2 H N N 362 PRO HD3 H N N 363 PRO HXT H N N 364 SER N N N N 365 SER CA C N S 366 SER C C N N 367 SER O O N N 368 SER CB C N N 369 SER OG O N N 370 SER OXT O N N 371 SER H H N N 372 SER H2 H N N 373 SER HA H N N 374 SER HB2 H N N 375 SER HB3 H N N 376 SER HG H N N 377 SER HXT H N N 378 THR N N N N 379 THR CA C N S 380 THR C C N N 381 THR O O N N 382 THR CB C N R 383 THR OG1 O N N 384 THR CG2 C N N 385 THR OXT O N N 386 THR H H N N 387 THR H2 H N N 388 THR HA H N N 389 THR HB H N N 390 THR HG1 H N N 391 THR HG21 H N N 392 THR HG22 H N N 393 THR HG23 H N N 394 THR HXT H N N 395 TRP N N N N 396 TRP CA C N S 397 TRP C C N N 398 TRP O O N N 399 TRP CB C N N 400 TRP CG C Y N 401 TRP CD1 C Y N 402 TRP CD2 C Y N 403 TRP NE1 N Y N 404 TRP CE2 C Y N 405 TRP CE3 C Y N 406 TRP CZ2 C Y N 407 TRP CZ3 C Y N 408 TRP CH2 C Y N 409 TRP OXT O N N 410 TRP H H N N 411 TRP H2 H N N 412 TRP HA H N N 413 TRP HB2 H N N 414 TRP HB3 H N N 415 TRP HD1 H N N 416 TRP HE1 H N N 417 TRP HE3 H N N 418 TRP HZ2 H N N 419 TRP HZ3 H N N 420 TRP HH2 H N N 421 TRP HXT H N N 422 TYR N N N N 423 TYR CA C N S 424 TYR C C N N 425 TYR O O N N 426 TYR CB C N N 427 TYR CG C Y N 428 TYR CD1 C Y N 429 TYR CD2 C Y N 430 TYR CE1 C Y N 431 TYR CE2 C Y N 432 TYR CZ C Y N 433 TYR OH O N N 434 TYR OXT O N N 435 TYR H H N N 436 TYR H2 H N N 437 TYR HA H N N 438 TYR HB2 H N N 439 TYR HB3 H N N 440 TYR HD1 H N N 441 TYR HD2 H N N 442 TYR HE1 H N N 443 TYR HE2 H N N 444 TYR HH H N N 445 TYR HXT H N N 446 VAL N N N N 447 VAL CA C N S 448 VAL C C N N 449 VAL O O N N 450 VAL CB C N N 451 VAL CG1 C N N 452 VAL CG2 C N N 453 VAL OXT O N N 454 VAL H H N N 455 VAL H2 H N N 456 VAL HA H N N 457 VAL HB H N N 458 VAL HG11 H N N 459 VAL HG12 H N N 460 VAL HG13 H N N 461 VAL HG21 H N N 462 VAL HG22 H N N 463 VAL HG23 H N N 464 VAL HXT H N N 465 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9JB CAA CAF sing N N 1 9JB OAG CAF sing N N 2 9JB CAF CAE sing N N 3 9JB CAE OAD sing N N 4 9JB OAD CAC sing N N 5 9JB CAC CAM sing N N 6 9JB CAN OAO sing N N 7 9JB CAN CAM sing N N 8 9JB CAW CAM sing N N 9 9JB CAW OAV sing N N 10 9JB CAM CAL sing N N 11 9JB OAV CAU sing N N 12 9JB CAU CAT sing N N 13 9JB CAL OAK sing N N 14 9JB OAK CAJ sing N N 15 9JB OAS CAT sing N N 16 9JB CAT CAY sing N N 17 9JB CAJ CAI sing N N 18 9JB CAI OAH sing N N 19 9JB CAI CAB sing N N 20 9JB CAA HAAA sing N N 21 9JB CAA HAA sing N N 22 9JB CAA HAAB sing N N 23 9JB CAB HABB sing N N 24 9JB CAB HABA sing N N 25 9JB CAB HAB sing N N 26 9JB CAC HACA sing N N 27 9JB CAC HAC sing N N 28 9JB CAE HAE sing N N 29 9JB CAE HAEA sing N N 30 9JB CAF HAF sing N N 31 9JB OAG HOAG sing N N 32 9JB OAH HOAH sing N N 33 9JB CAI HAI sing N N 34 9JB CAJ HAJ sing N N 35 9JB CAJ HAJA sing N N 36 9JB CAL HAL sing N N 37 9JB CAL HALA sing N N 38 9JB CAN HANA sing N N 39 9JB CAN HAN sing N N 40 9JB OAO HA4 sing N N 41 9JB OAS HOAS sing N N 42 9JB CAT HAT sing N N 43 9JB CAU HAU sing N N 44 9JB CAU HAUA sing N N 45 9JB CAW HAW sing N N 46 9JB CAW HAWA sing N N 47 9JB CAY HAYB sing N N 48 9JB CAY HAY sing N N 49 9JB CAY HAYA sing N N 50 ALA N CA sing N N 51 ALA N H sing N N 52 ALA N H2 sing N N 53 ALA CA C sing N N 54 ALA CA CB sing N N 55 ALA CA HA sing N N 56 ALA C O doub N N 57 ALA C OXT sing N N 58 ALA CB HB1 sing N N 59 ALA CB HB2 sing N N 60 ALA CB HB3 sing N N 61 ALA OXT HXT sing N N 62 ARG N CA sing N N 63 ARG N H sing N N 64 ARG N H2 sing N N 65 ARG CA C sing N N 66 ARG CA CB sing N N 67 ARG CA HA sing N N 68 ARG C O doub N N 69 ARG C OXT sing N N 70 ARG CB CG sing N N 71 ARG CB HB2 sing N N 72 ARG CB HB3 sing N N 73 ARG CG CD sing N N 74 ARG CG HG2 sing N N 75 ARG CG HG3 sing N N 76 ARG CD NE sing N N 77 ARG CD HD2 sing N N 78 ARG CD HD3 sing N N 79 ARG NE CZ sing N N 80 ARG NE HE sing N N 81 ARG CZ NH1 sing N N 82 ARG CZ NH2 doub N N 83 ARG NH1 HH11 sing N N 84 ARG NH1 HH12 sing N N 85 ARG NH2 HH21 sing N N 86 ARG NH2 HH22 sing N N 87 ARG OXT HXT sing N N 88 ASN N CA sing N N 89 ASN N H sing N N 90 ASN N H2 sing N N 91 ASN CA C sing N N 92 ASN CA CB sing N N 93 ASN CA HA sing N N 94 ASN C O doub N N 95 ASN C OXT sing N N 96 ASN CB CG sing N N 97 ASN CB HB2 sing N N 98 ASN CB HB3 sing N N 99 ASN CG OD1 doub N N 100 ASN CG ND2 sing N N 101 ASN ND2 HD21 sing N N 102 ASN ND2 HD22 sing N N 103 ASN OXT HXT sing N N 104 ASP N CA sing N N 105 ASP N H sing N N 106 ASP N H2 sing N N 107 ASP CA C sing N N 108 ASP CA CB sing N N 109 ASP CA HA sing N N 110 ASP C O doub N N 111 ASP C OXT sing N N 112 ASP CB CG sing N N 113 ASP CB HB2 sing N N 114 ASP CB HB3 sing N N 115 ASP CG OD1 doub N N 116 ASP CG OD2 sing N N 117 ASP OD2 HD2 sing N N 118 ASP OXT HXT sing N N 119 CYS N CA sing N N 120 CYS N H sing N N 121 CYS N H2 sing N N 122 CYS CA C sing N N 123 CYS CA CB sing N N 124 CYS CA HA sing N N 125 CYS C O doub N N 126 CYS C OXT sing N N 127 CYS CB SG sing N N 128 CYS CB HB2 sing N N 129 CYS CB HB3 sing N N 130 CYS SG HG sing N N 131 CYS OXT HXT sing N N 132 DQW CAI CAG sing N N 133 DQW OAA CAB sing N N 134 DQW CAB CAD sing N N 135 DQW CAB CAC sing N N 136 DQW CAG OAH sing N N 137 DQW CAG CAF sing N N 138 DQW OAE CAC sing N N 139 DQW OAE CAF sing N N 140 DQW CAD HAG sing N N 141 DQW CAD HAE sing N N 142 DQW CAD HAF sing N N 143 DQW CAB HAB sing N N 144 DQW OAA HAA sing N N 145 DQW CAC HAC sing N N 146 DQW CAC HAD sing N N 147 DQW CAF HAI sing N N 148 DQW CAF HAH sing N N 149 DQW CAG HAJ sing N N 150 DQW CAI HAL sing N N 151 DQW CAI HAM sing N N 152 DQW CAI HAK sing N N 153 DQW OAH HAN sing N N 154 GLN N CA sing N N 155 GLN N H sing N N 156 GLN N H2 sing N N 157 GLN CA C sing N N 158 GLN CA CB sing N N 159 GLN CA HA sing N N 160 GLN C O doub N N 161 GLN C OXT sing N N 162 GLN CB CG sing N N 163 GLN CB HB2 sing N N 164 GLN CB HB3 sing N N 165 GLN CG CD sing N N 166 GLN CG HG2 sing N N 167 GLN CG HG3 sing N N 168 GLN CD OE1 doub N N 169 GLN CD NE2 sing N N 170 GLN NE2 HE21 sing N N 171 GLN NE2 HE22 sing N N 172 GLN OXT HXT sing N N 173 GLU N CA sing N N 174 GLU N H sing N N 175 GLU N H2 sing N N 176 GLU CA C sing N N 177 GLU CA CB sing N N 178 GLU CA HA sing N N 179 GLU C O doub N N 180 GLU C OXT sing N N 181 GLU CB CG sing N N 182 GLU CB HB2 sing N N 183 GLU CB HB3 sing N N 184 GLU CG CD sing N N 185 GLU CG HG2 sing N N 186 GLU CG HG3 sing N N 187 GLU CD OE1 doub N N 188 GLU CD OE2 sing N N 189 GLU OE2 HE2 sing N N 190 GLU OXT HXT sing N N 191 GLY N CA sing N N 192 GLY N H sing N N 193 GLY N H2 sing N N 194 GLY CA C sing N N 195 GLY CA HA2 sing N N 196 GLY CA HA3 sing N N 197 GLY C O doub N N 198 GLY C OXT sing N N 199 GLY OXT HXT sing N N 200 HIS N CA sing N N 201 HIS N H sing N N 202 HIS N H2 sing N N 203 HIS CA C sing N N 204 HIS CA CB sing N N 205 HIS CA HA sing N N 206 HIS C O doub N N 207 HIS C OXT sing N N 208 HIS CB CG sing N N 209 HIS CB HB2 sing N N 210 HIS CB HB3 sing N N 211 HIS CG ND1 sing Y N 212 HIS CG CD2 doub Y N 213 HIS ND1 CE1 doub Y N 214 HIS ND1 HD1 sing N N 215 HIS CD2 NE2 sing Y N 216 HIS CD2 HD2 sing N N 217 HIS CE1 NE2 sing Y N 218 HIS CE1 HE1 sing N N 219 HIS NE2 HE2 sing N N 220 HIS OXT HXT sing N N 221 HOH O H1 sing N N 222 HOH O H2 sing N N 223 ILE N CA sing N N 224 ILE N H sing N N 225 ILE N H2 sing N N 226 ILE CA C sing N N 227 ILE CA CB sing N N 228 ILE CA HA sing N N 229 ILE C O doub N N 230 ILE C OXT sing N N 231 ILE CB CG1 sing N N 232 ILE CB CG2 sing N N 233 ILE CB HB sing N N 234 ILE CG1 CD1 sing N N 235 ILE CG1 HG12 sing N N 236 ILE CG1 HG13 sing N N 237 ILE CG2 HG21 sing N N 238 ILE CG2 HG22 sing N N 239 ILE CG2 HG23 sing N N 240 ILE CD1 HD11 sing N N 241 ILE CD1 HD12 sing N N 242 ILE CD1 HD13 sing N N 243 ILE OXT HXT sing N N 244 LEU N CA sing N N 245 LEU N H sing N N 246 LEU N H2 sing N N 247 LEU CA C sing N N 248 LEU CA CB sing N N 249 LEU CA HA sing N N 250 LEU C O doub N N 251 LEU C OXT sing N N 252 LEU CB CG sing N N 253 LEU CB HB2 sing N N 254 LEU CB HB3 sing N N 255 LEU CG CD1 sing N N 256 LEU CG CD2 sing N N 257 LEU CG HG sing N N 258 LEU CD1 HD11 sing N N 259 LEU CD1 HD12 sing N N 260 LEU CD1 HD13 sing N N 261 LEU CD2 HD21 sing N N 262 LEU CD2 HD22 sing N N 263 LEU CD2 HD23 sing N N 264 LEU OXT HXT sing N N 265 LYS N CA sing N N 266 LYS N H sing N N 267 LYS N H2 sing N N 268 LYS CA C sing N N 269 LYS CA CB sing N N 270 LYS CA HA sing N N 271 LYS C O doub N N 272 LYS C OXT sing N N 273 LYS CB CG sing N N 274 LYS CB HB2 sing N N 275 LYS CB HB3 sing N N 276 LYS CG CD sing N N 277 LYS CG HG2 sing N N 278 LYS CG HG3 sing N N 279 LYS CD CE sing N N 280 LYS CD HD2 sing N N 281 LYS CD HD3 sing N N 282 LYS CE NZ sing N N 283 LYS CE HE2 sing N N 284 LYS CE HE3 sing N N 285 LYS NZ HZ1 sing N N 286 LYS NZ HZ2 sing N N 287 LYS NZ HZ3 sing N N 288 LYS OXT HXT sing N N 289 MET N CA sing N N 290 MET N H sing N N 291 MET N H2 sing N N 292 MET CA C sing N N 293 MET CA CB sing N N 294 MET CA HA sing N N 295 MET C O doub N N 296 MET C OXT sing N N 297 MET CB CG sing N N 298 MET CB HB2 sing N N 299 MET CB HB3 sing N N 300 MET CG SD sing N N 301 MET CG HG2 sing N N 302 MET CG HG3 sing N N 303 MET SD CE sing N N 304 MET CE HE1 sing N N 305 MET CE HE2 sing N N 306 MET CE HE3 sing N N 307 MET OXT HXT sing N N 308 PHE N CA sing N N 309 PHE N H sing N N 310 PHE N H2 sing N N 311 PHE CA C sing N N 312 PHE CA CB sing N N 313 PHE CA HA sing N N 314 PHE C O doub N N 315 PHE C OXT sing N N 316 PHE CB CG sing N N 317 PHE CB HB2 sing N N 318 PHE CB HB3 sing N N 319 PHE CG CD1 doub Y N 320 PHE CG CD2 sing Y N 321 PHE CD1 CE1 sing Y N 322 PHE CD1 HD1 sing N N 323 PHE CD2 CE2 doub Y N 324 PHE CD2 HD2 sing N N 325 PHE CE1 CZ doub Y N 326 PHE CE1 HE1 sing N N 327 PHE CE2 CZ sing Y N 328 PHE CE2 HE2 sing N N 329 PHE CZ HZ sing N N 330 PHE OXT HXT sing N N 331 PRO N CA sing N N 332 PRO N CD sing N N 333 PRO N H sing N N 334 PRO CA C sing N N 335 PRO CA CB sing N N 336 PRO CA HA sing N N 337 PRO C O doub N N 338 PRO C OXT sing N N 339 PRO CB CG sing N N 340 PRO CB HB2 sing N N 341 PRO CB HB3 sing N N 342 PRO CG CD sing N N 343 PRO CG HG2 sing N N 344 PRO CG HG3 sing N N 345 PRO CD HD2 sing N N 346 PRO CD HD3 sing N N 347 PRO OXT HXT sing N N 348 SER N CA sing N N 349 SER N H sing N N 350 SER N H2 sing N N 351 SER CA C sing N N 352 SER CA CB sing N N 353 SER CA HA sing N N 354 SER C O doub N N 355 SER C OXT sing N N 356 SER CB OG sing N N 357 SER CB HB2 sing N N 358 SER CB HB3 sing N N 359 SER OG HG sing N N 360 SER OXT HXT sing N N 361 THR N CA sing N N 362 THR N H sing N N 363 THR N H2 sing N N 364 THR CA C sing N N 365 THR CA CB sing N N 366 THR CA HA sing N N 367 THR C O doub N N 368 THR C OXT sing N N 369 THR CB OG1 sing N N 370 THR CB CG2 sing N N 371 THR CB HB sing N N 372 THR OG1 HG1 sing N N 373 THR CG2 HG21 sing N N 374 THR CG2 HG22 sing N N 375 THR CG2 HG23 sing N N 376 THR OXT HXT sing N N 377 TRP N CA sing N N 378 TRP N H sing N N 379 TRP N H2 sing N N 380 TRP CA C sing N N 381 TRP CA CB sing N N 382 TRP CA HA sing N N 383 TRP C O doub N N 384 TRP C OXT sing N N 385 TRP CB CG sing N N 386 TRP CB HB2 sing N N 387 TRP CB HB3 sing N N 388 TRP CG CD1 doub Y N 389 TRP CG CD2 sing Y N 390 TRP CD1 NE1 sing Y N 391 TRP CD1 HD1 sing N N 392 TRP CD2 CE2 doub Y N 393 TRP CD2 CE3 sing Y N 394 TRP NE1 CE2 sing Y N 395 TRP NE1 HE1 sing N N 396 TRP CE2 CZ2 sing Y N 397 TRP CE3 CZ3 doub Y N 398 TRP CE3 HE3 sing N N 399 TRP CZ2 CH2 doub Y N 400 TRP CZ2 HZ2 sing N N 401 TRP CZ3 CH2 sing Y N 402 TRP CZ3 HZ3 sing N N 403 TRP CH2 HH2 sing N N 404 TRP OXT HXT sing N N 405 TYR N CA sing N N 406 TYR N H sing N N 407 TYR N H2 sing N N 408 TYR CA C sing N N 409 TYR CA CB sing N N 410 TYR CA HA sing N N 411 TYR C O doub N N 412 TYR C OXT sing N N 413 TYR CB CG sing N N 414 TYR CB HB2 sing N N 415 TYR CB HB3 sing N N 416 TYR CG CD1 doub Y N 417 TYR CG CD2 sing Y N 418 TYR CD1 CE1 sing Y N 419 TYR CD1 HD1 sing N N 420 TYR CD2 CE2 doub Y N 421 TYR CD2 HD2 sing N N 422 TYR CE1 CZ doub Y N 423 TYR CE1 HE1 sing N N 424 TYR CE2 CZ sing Y N 425 TYR CE2 HE2 sing N N 426 TYR CZ OH sing N N 427 TYR OH HH sing N N 428 TYR OXT HXT sing N N 429 VAL N CA sing N N 430 VAL N H sing N N 431 VAL N H2 sing N N 432 VAL CA C sing N N 433 VAL CA CB sing N N 434 VAL CA HA sing N N 435 VAL C O doub N N 436 VAL C OXT sing N N 437 VAL CB CG1 sing N N 438 VAL CB CG2 sing N N 439 VAL CB HB sing N N 440 VAL CG1 HG11 sing N N 441 VAL CG1 HG12 sing N N 442 VAL CG1 HG13 sing N N 443 VAL CG2 HG21 sing N N 444 VAL CG2 HG22 sing N N 445 VAL CG2 HG23 sing N N 446 VAL OXT HXT sing N N 447 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/J001201/2 1 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/G023123/2 2 'European Research Council' ? 'ERC-2012-StG-311460 DrugE3CRLs' 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4QEU _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5O38 _atom_sites.fract_transf_matrix[1][1] 0.019077 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014004 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031280 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H N O S # loop_