HEADER OXIDOREDUCTASE 25-MAY-17 5O40 TITLE SOD1 BOUND TO EBSELEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, F; COMPND 4 SYNONYM: SUPEROXIDE DISMUTASE 1,HSOD1; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, COMPLEX, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR M.J.CAPPER,G.S.A.WRIGHT,S.V.ANTONYUK,S.S.HASNAIN REVDAT 3 07-FEB-24 5O40 1 COMPND REMARK HETNAM HETSYN REVDAT 3 2 1 LINK REVDAT 2 27-JUN-18 5O40 1 JRNL REVDAT 1 13-JUN-18 5O40 0 JRNL AUTH M.J.CAPPER,G.S.A.WRIGHT,L.BARBIERI,E.LUCHINAT,E.MERCATELLI, JRNL AUTH 2 L.MCALARY,J.J.YERBURY,P.M.O'NEILL,S.V.ANTONYUK,L.BANCI, JRNL AUTH 3 S.S.HASNAIN JRNL TITL THE CYSTEINE-REACTIVE SMALL MOLECULE EBSELEN FACILITATES JRNL TITL 2 EFFECTIVE SOD1 MATURATION. JRNL REF NAT COMMUN V. 9 1693 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29703933 JRNL DOI 10.1038/S41467-018-04114-X REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2748 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.56000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2338 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2059 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3179 ; 1.363 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4784 ; 1.220 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 6.627 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;39.102 ;25.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 349 ; 9.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 9.304 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2732 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 452 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1251 ; 1.275 ; 1.073 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1250 ; 1.276 ; 1.073 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1570 ; 1.738 ; 1.618 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1571 ; 1.739 ; 1.618 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1087 ; 1.673 ; 1.246 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1084 ; 1.674 ; 1.247 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1602 ; 2.207 ; 1.790 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2561 ; 4.279 ;15.289 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2468 ; 3.486 ;14.227 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4385 ; 4.575 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 152 ;32.449 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4483 ;11.472 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39891 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2V0A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NAACT PH 4, 2.4 M AMSO4, 150 MM REMARK 280 NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.92000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 9 CD CE NZ REMARK 480 LYS A 23 CD CE NZ REMARK 480 GLU A 24 CD OE1 OE2 REMARK 480 LYS A 30 CD CE NZ REMARK 480 LYS A 70 CE NZ REMARK 480 LYS A 75 CD CE NZ REMARK 480 GLU A 132 CD OE1 OE2 REMARK 480 LYS A 136 CD CE NZ REMARK 480 LYS F 23 CD CE NZ REMARK 480 ASN F 26 CG OD1 ND2 REMARK 480 LYS F 36 CE NZ REMARK 480 LYS F 70 CE NZ REMARK 480 LYS F 75 CD CE NZ REMARK 480 GLU F 77 CD OE1 OE2 REMARK 480 GLU F 132 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 111 SE1 9JT A 503 1.87 REMARK 500 SG CYS F 111 SE1 9JT F 503 1.87 REMARK 500 OD1 ASN F 26 O HOH F 601 1.89 REMARK 500 CG ASN F 26 O HOH F 601 1.94 REMARK 500 OD1 ASN F 26 O HOH F 602 1.95 REMARK 500 ND2 ASN F 26 O HOH F 601 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 136 O HOH F 661 2645 0.59 REMARK 500 CE LYS A 136 O HOH F 661 2645 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 132 CG GLU A 132 CD -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 122.8 REMARK 620 3 HIS A 120 NE2 96.8 126.5 REMARK 620 4 SO4 A 504 O4 100.7 105.2 100.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 101.8 REMARK 620 3 HIS A 80 ND1 107.9 124.5 REMARK 620 4 ASP A 83 OD1 105.7 95.8 118.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 46 ND1 REMARK 620 2 HIS F 48 NE2 121.0 REMARK 620 3 HIS F 120 NE2 99.4 127.0 REMARK 620 4 SO4 F 504 O1 99.7 104.4 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 63 ND1 REMARK 620 2 HIS F 71 ND1 100.5 REMARK 620 3 HIS F 80 ND1 109.4 125.0 REMARK 620 4 ASP F 83 OD1 105.1 96.6 117.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9JT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9JT F 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 504 DBREF 5O40 A 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 5O40 F 1 153 UNP P00441 SODC_HUMAN 2 154 SEQRES 1 A 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 A 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 F 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 F 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 F 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 F 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 F 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 F 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 F 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 F 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 F 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 F 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 F 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 F 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET ZN A 501 1 HET ZN A 502 1 HET 9JT A 503 16 HET SO4 A 504 5 HET ZN F 501 1 HET ZN F 502 1 HET 9JT F 503 16 HET SO4 F 504 5 HETNAM ZN ZINC ION HETNAM 9JT N-PHENYL-2-SELANYLBENZAMIDE HETNAM SO4 SULFATE ION HETSYN 9JT ~{N}-PHENYL-2-SELANYL-BENZAMIDE; EBSELEN, BOUND FORM FORMUL 3 ZN 4(ZN 2+) FORMUL 5 9JT 2(C13 H11 N O SE) FORMUL 6 SO4 2(O4 S 2-) FORMUL 11 HOH *309(H2 O) HELIX 1 AA1 ALA A 55 GLY A 61 5 7 HELIX 2 AA2 GLU A 132 LYS A 136 5 5 HELIX 3 AA3 ALA F 55 GLY F 61 5 7 HELIX 4 AA4 SER F 107 CYS F 111 5 5 HELIX 5 AA5 GLU F 132 LYS F 136 5 5 SHEET 1 AA1 5 ALA A 95 ASP A 101 0 SHEET 2 AA1 5 VAL A 29 LYS A 36 -1 N ILE A 35 O ALA A 95 SHEET 3 AA1 5 GLN A 15 GLN A 22 -1 N ASN A 19 O TRP A 32 SHEET 4 AA1 5 THR A 2 LEU A 8 -1 N ALA A 4 O PHE A 20 SHEET 5 AA1 5 GLY A 150 ALA A 152 -1 O GLY A 150 N VAL A 5 SHEET 1 AA2 4 ASP A 83 ALA A 89 0 SHEET 2 AA2 4 GLY A 41 HIS A 48 -1 N GLY A 41 O ALA A 89 SHEET 3 AA2 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 AA2 4 ARG A 143 VAL A 148 -1 O ALA A 145 N VAL A 119 SHEET 1 AA3 5 ALA F 95 ASP F 101 0 SHEET 2 AA3 5 VAL F 29 LYS F 36 -1 N ILE F 35 O ALA F 95 SHEET 3 AA3 5 VAL F 14 GLN F 22 -1 N ASN F 19 O TRP F 32 SHEET 4 AA3 5 THR F 2 GLY F 10 -1 N THR F 2 O GLN F 22 SHEET 5 AA3 5 GLY F 150 ILE F 151 -1 O GLY F 150 N VAL F 5 SHEET 1 AA4 4 ASP F 83 ALA F 89 0 SHEET 2 AA4 4 GLY F 41 HIS F 48 -1 N GLY F 41 O ALA F 89 SHEET 3 AA4 4 THR F 116 HIS F 120 -1 O THR F 116 N HIS F 48 SHEET 4 AA4 4 ARG F 143 VAL F 148 -1 O ALA F 145 N VAL F 119 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.05 SSBOND 2 CYS F 57 CYS F 146 1555 1555 2.05 LINK ND1 HIS A 46 ZN ZN A 502 1555 1555 2.08 LINK NE2 HIS A 48 ZN ZN A 502 1555 1555 2.07 LINK ND1 HIS A 63 ZN ZN A 501 1555 1555 2.05 LINK ND1 HIS A 71 ZN ZN A 501 1555 1555 2.06 LINK ND1 HIS A 80 ZN ZN A 501 1555 1555 2.02 LINK OD1 ASP A 83 ZN ZN A 501 1555 1555 1.97 LINK NE2 HIS A 120 ZN ZN A 502 1555 1555 1.98 LINK ZN ZN A 502 O4 SO4 A 504 1555 1555 2.01 LINK ND1 HIS F 46 ZN ZN F 502 1555 1555 2.08 LINK NE2 HIS F 48 ZN ZN F 502 1555 1555 2.11 LINK ND1 HIS F 63 ZN ZN F 501 1555 1555 2.04 LINK ND1 HIS F 71 ZN ZN F 501 1555 1555 2.09 LINK ND1 HIS F 80 ZN ZN F 501 1555 1555 2.04 LINK OD1 ASP F 83 ZN ZN F 501 1555 1555 1.98 LINK NE2 HIS F 120 ZN ZN F 502 1555 1555 1.97 LINK ZN ZN F 502 O1 SO4 F 504 1555 1555 1.97 CISPEP 1 GLY F 12 PRO F 13 0 -1.48 SITE 1 AC1 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC2 5 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 2 AC2 5 SO4 A 504 SITE 1 AC3 9 GLN A 15 LYS A 36 LEU A 106 SER A 107 SITE 2 AC3 9 GLY A 108 CYS A 111 ILE A 113 HOH A 613 SITE 3 AC3 9 9JT F 503 SITE 1 AC4 10 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 2 AC4 10 THR A 137 ARG A 143 ZN A 502 HOH A 602 SITE 3 AC4 10 HOH A 629 HOH A 646 SITE 1 AC5 4 HIS F 63 HIS F 71 HIS F 80 ASP F 83 SITE 1 AC6 5 HIS F 46 HIS F 48 HIS F 63 HIS F 120 SITE 2 AC6 5 SO4 F 504 SITE 1 AC7 8 9JT A 503 LEU F 106 GLY F 108 ASP F 109 SITE 2 AC7 8 CYS F 111 ILE F 113 HOH F 609 HOH F 685 SITE 1 AC8 10 HIS F 46 HIS F 48 HIS F 63 HIS F 120 SITE 2 AC8 10 THR F 137 ARG F 143 ZN F 502 HOH F 618 SITE 3 AC8 10 HOH F 626 HOH F 646 CRYST1 38.100 67.840 51.040 90.00 106.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026247 0.000000 0.007700 0.00000 SCALE2 0.000000 0.014741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020418 0.00000