HEADER ONCOPROTEIN 29-MAY-17 5O4G TITLE HER2 IN COMPLEX WITH FAB MF3958 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: UNP RESIDUES 23-628; COMPND 5 SYNONYM: METASTATIC LYMPH NODE GENE 19 PROTEIN,MLN 19,PROTO-ONCOGENE COMPND 6 NEU,PROTO-ONCOGENE C-ERBB-2,TYROSINE KINASE-TYPE CELL SURFACE COMPND 7 RECEPTOR HER2,P185ERBB2; COMPND 8 EC: 2.7.10.1; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: MF3958 FAB LIGHT CHAIN; COMPND 12 CHAIN: A; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: MF3958 FAB HEAVY CHAIN; COMPND 16 CHAIN: B; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERBB2, HER2, MLN19, NEU, NGL; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 23 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 25 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS HER2 ECTODOMAIN, COMPLEX, FAB, TRANSFERASE, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.DE NARDIS,P.GROS REVDAT 5 17-JAN-24 5O4G 1 HETSYN LINK REVDAT 4 29-JUL-20 5O4G 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 20-FEB-19 5O4G 1 REMARK LINK REVDAT 2 23-MAY-18 5O4G 1 JRNL REVDAT 1 16-MAY-18 5O4G 0 JRNL AUTH C.A.W.GEUIJEN,C.DE NARDIS,D.MAUSSANG,E.ROVERS,T.GALLENNE, JRNL AUTH 2 L.J.A.HENDRIKS,T.VISSER,R.NIJHUIS,T.LOGTENBERG,J.DE KRUIF, JRNL AUTH 3 P.GROS,M.THROSBY JRNL TITL UNBIASED COMBINATORIAL SCREENING IDENTIFIES A BISPECIFIC JRNL TITL 2 IGG1 THAT POTENTLY INHIBITS HER3 SIGNALING VIA HER2-GUIDED JRNL TITL 3 LIGAND BLOCKADE. JRNL REF CANCER CELL V. 33 922 2018 JRNL REFN ISSN 1878-3686 JRNL PMID 29763625 JRNL DOI 10.1016/J.CCELL.2018.04.003 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 30435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8372 - 6.6590 0.95 2610 169 0.2153 0.2462 REMARK 3 2 6.6590 - 5.2909 0.97 2632 128 0.2282 0.2857 REMARK 3 3 5.2909 - 4.6237 0.96 2606 134 0.1920 0.2217 REMARK 3 4 4.6237 - 4.2016 0.98 2620 125 0.1833 0.2106 REMARK 3 5 4.2016 - 3.9009 0.98 2668 144 0.2044 0.2367 REMARK 3 6 3.9009 - 3.6711 0.98 2652 131 0.2245 0.2877 REMARK 3 7 3.6711 - 3.4874 0.95 2538 141 0.2544 0.3496 REMARK 3 8 3.4874 - 3.3357 0.98 2637 130 0.2727 0.3080 REMARK 3 9 3.3357 - 3.2074 0.98 2653 137 0.2797 0.3552 REMARK 3 10 3.2074 - 3.0968 0.99 2635 131 0.3054 0.2767 REMARK 3 11 3.0968 - 3.0000 0.99 2653 161 0.3450 0.3974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 7678 REMARK 3 ANGLE : 0.576 10432 REMARK 3 CHIRALITY : 0.023 1191 REMARK 3 PLANARITY : 0.003 1343 REMARK 3 DIHEDRAL : 10.284 2786 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30946 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.835 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.78600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1N8Y, 3SKJ, 2EH7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 15% PEG 6000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.75000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO C 100 REMARK 465 LEU C 101 REMARK 465 ASN C 102 REMARK 465 ASN C 103 REMARK 465 THR C 104 REMARK 465 THR C 105 REMARK 465 PRO C 106 REMARK 465 VAL C 107 REMARK 465 THR C 108 REMARK 465 GLY C 109 REMARK 465 ALA C 110 REMARK 465 SER C 111 REMARK 465 PRO C 543 REMARK 465 GLU C 544 REMARK 465 CYS C 545 REMARK 465 GLN C 546 REMARK 465 PRO C 547 REMARK 465 GLN C 548 REMARK 465 ASN C 549 REMARK 465 GLY C 550 REMARK 465 SER C 551 REMARK 465 VAL C 552 REMARK 465 THR C 553 REMARK 465 CYS C 554 REMARK 465 PHE C 555 REMARK 465 GLY C 556 REMARK 465 PRO C 557 REMARK 465 GLU C 558 REMARK 465 ALA C 559 REMARK 465 ASP C 560 REMARK 465 GLN C 561 REMARK 465 CYS C 562 REMARK 465 VAL C 563 REMARK 465 ALA C 564 REMARK 465 CYS C 565 REMARK 465 ALA C 566 REMARK 465 HIS C 567 REMARK 465 TYR C 568 REMARK 465 LYS C 569 REMARK 465 ASP C 570 REMARK 465 PRO C 571 REMARK 465 PRO C 572 REMARK 465 PHE C 573 REMARK 465 CYS C 574 REMARK 465 VAL C 575 REMARK 465 ALA C 576 REMARK 465 ARG C 577 REMARK 465 CYS C 578 REMARK 465 PRO C 579 REMARK 465 SER C 580 REMARK 465 GLY C 581 REMARK 465 VAL C 582 REMARK 465 LYS C 583 REMARK 465 PRO C 584 REMARK 465 ASP C 585 REMARK 465 LEU C 586 REMARK 465 SER C 587 REMARK 465 TYR C 588 REMARK 465 MET C 589 REMARK 465 PRO C 590 REMARK 465 ILE C 591 REMARK 465 TRP C 592 REMARK 465 LYS C 593 REMARK 465 PHE C 594 REMARK 465 PRO C 595 REMARK 465 ASP C 596 REMARK 465 GLU C 597 REMARK 465 GLU C 598 REMARK 465 GLY C 599 REMARK 465 ALA C 600 REMARK 465 CYS C 601 REMARK 465 GLN C 602 REMARK 465 PRO C 603 REMARK 465 CYS C 604 REMARK 465 PRO C 605 REMARK 465 ILE C 606 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 TRP B -17 REMARK 465 SER B -16 REMARK 465 CYS B -15 REMARK 465 ILE B -14 REMARK 465 ILE B -13 REMARK 465 LEU B -12 REMARK 465 PHE B -11 REMARK 465 LEU B -10 REMARK 465 VAL B -9 REMARK 465 LEU B -8 REMARK 465 LEU B -7 REMARK 465 LEU B -6 REMARK 465 ALA B -5 REMARK 465 GLN B -4 REMARK 465 PRO B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 LYS B 217 REMARK 465 ARG B 218 REMARK 465 VAL B 219 REMARK 465 GLU B 220 REMARK 465 PRO B 221 REMARK 465 LYS B 222 REMARK 465 SER B 223 REMARK 465 CYS B 224 REMARK 465 ALA B 225 REMARK 465 ALA B 226 REMARK 465 ALA B 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS C 522 SG CYS C 538 0.68 REMARK 500 CB CYS C 214 SG CYS C 222 1.59 REMARK 500 SG CYS B 148 CB CYS B 204 1.91 REMARK 500 SG CYS C 214 CB CYS C 222 2.06 REMARK 500 SG CYS C 522 CB CYS C 538 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 529 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 7 -169.71 -123.92 REMARK 500 ASP C 8 37.18 -162.15 REMARK 500 LYS C 10 -134.25 53.09 REMARK 500 ASN C 46 31.60 -93.66 REMARK 500 SER C 50 5.15 -69.33 REMARK 500 PRO C 73 88.13 -66.62 REMARK 500 LEU C 77 105.55 -58.52 REMARK 500 ASP C 88 8.71 58.81 REMARK 500 LEU C 123 98.32 -65.92 REMARK 500 ASN C 165 87.81 -67.32 REMARK 500 ARG C 195 -50.18 -137.36 REMARK 500 ALA C 219 -73.76 -118.56 REMARK 500 HIS C 235 -75.00 -129.09 REMARK 500 THR C 256 -12.28 67.10 REMARK 500 PRO C 315 127.35 -37.12 REMARK 500 GLU C 326 -117.80 51.14 REMARK 500 THR C 335 -165.74 -121.93 REMARK 500 ASN C 338 4.19 -150.60 REMARK 500 LEU C 400 45.68 -96.40 REMARK 500 ALA C 418 -51.35 -126.67 REMARK 500 CYS C 453 -165.79 -121.65 REMARK 500 LEU C 487 70.57 -106.35 REMARK 500 PHE C 512 80.09 53.08 REMARK 500 LEU C 525 27.74 -144.61 REMARK 500 PRO C 529 52.41 -2.24 REMARK 500 TYR A 32 33.81 -96.00 REMARK 500 ALA A 51 -106.02 60.12 REMARK 500 ARG A 108 -167.22 -128.08 REMARK 500 ASN A 138 71.38 53.37 REMARK 500 ASN A 158 36.39 -92.97 REMARK 500 LYS A 169 -69.31 -95.81 REMARK 500 PRO A 204 109.90 -48.84 REMARK 500 ALA B 9 78.47 -65.52 REMARK 500 ARG B 67 -159.27 -117.06 REMARK 500 ALA B 68 75.73 53.53 REMARK 500 ALA B 72 142.64 -170.47 REMARK 500 TYR B 80 74.29 52.26 REMARK 500 SER B 84 -62.82 -92.43 REMARK 500 GLN B 113 88.40 -64.94 REMARK 500 ASP B 152 74.60 56.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 5O4G C 1 606 UNP P04626 ERBB2_HUMAN 23 628 DBREF 5O4G A 1 214 PDB 5O4G 5O4G 1 214 DBREF 5O4G B -19 227 PDB 5O4G 5O4G -19 227 SEQRES 1 C 606 THR GLN VAL CYS THR GLY THR ASP MET LYS LEU ARG LEU SEQRES 2 C 606 PRO ALA SER PRO GLU THR HIS LEU ASP MET LEU ARG HIS SEQRES 3 C 606 LEU TYR GLN GLY CYS GLN VAL VAL GLN GLY ASN LEU GLU SEQRES 4 C 606 LEU THR TYR LEU PRO THR ASN ALA SER LEU SER PHE LEU SEQRES 5 C 606 GLN ASP ILE GLN GLU VAL GLN GLY TYR VAL LEU ILE ALA SEQRES 6 C 606 HIS ASN GLN VAL ARG GLN VAL PRO LEU GLN ARG LEU ARG SEQRES 7 C 606 ILE VAL ARG GLY THR GLN LEU PHE GLU ASP ASN TYR ALA SEQRES 8 C 606 LEU ALA VAL LEU ASP ASN GLY ASP PRO LEU ASN ASN THR SEQRES 9 C 606 THR PRO VAL THR GLY ALA SER PRO GLY GLY LEU ARG GLU SEQRES 10 C 606 LEU GLN LEU ARG SER LEU THR GLU ILE LEU LYS GLY GLY SEQRES 11 C 606 VAL LEU ILE GLN ARG ASN PRO GLN LEU CYS TYR GLN ASP SEQRES 12 C 606 THR ILE LEU TRP LYS ASP ILE PHE HIS LYS ASN ASN GLN SEQRES 13 C 606 LEU ALA LEU THR LEU ILE ASP THR ASN ARG SER ARG ALA SEQRES 14 C 606 CYS HIS PRO CYS SER PRO MET CYS LYS GLY SER ARG CYS SEQRES 15 C 606 TRP GLY GLU SER SER GLU ASP CYS GLN SER LEU THR ARG SEQRES 16 C 606 THR VAL CYS ALA GLY GLY CYS ALA ARG CYS LYS GLY PRO SEQRES 17 C 606 LEU PRO THR ASP CYS CYS HIS GLU GLN CYS ALA ALA GLY SEQRES 18 C 606 CYS THR GLY PRO LYS HIS SER ASP CYS LEU ALA CYS LEU SEQRES 19 C 606 HIS PHE ASN HIS SER GLY ILE CYS GLU LEU HIS CYS PRO SEQRES 20 C 606 ALA LEU VAL THR TYR ASN THR ASP THR PHE GLU SER MET SEQRES 21 C 606 PRO ASN PRO GLU GLY ARG TYR THR PHE GLY ALA SER CYS SEQRES 22 C 606 VAL THR ALA CYS PRO TYR ASN TYR LEU SER THR ASP VAL SEQRES 23 C 606 GLY SER CYS THR LEU VAL CYS PRO LEU HIS ASN GLN GLU SEQRES 24 C 606 VAL THR ALA GLU ASP GLY THR GLN ARG CYS GLU LYS CYS SEQRES 25 C 606 SER LYS PRO CYS ALA ARG VAL CYS TYR GLY LEU GLY MET SEQRES 26 C 606 GLU HIS LEU ARG GLU VAL ARG ALA VAL THR SER ALA ASN SEQRES 27 C 606 ILE GLN GLU PHE ALA GLY CYS LYS LYS ILE PHE GLY SER SEQRES 28 C 606 LEU ALA PHE LEU PRO GLU SER PHE ASP GLY ASP PRO ALA SEQRES 29 C 606 SER ASN THR ALA PRO LEU GLN PRO GLU GLN LEU GLN VAL SEQRES 30 C 606 PHE GLU THR LEU GLU GLU ILE THR GLY TYR LEU TYR ILE SEQRES 31 C 606 SER ALA TRP PRO ASP SER LEU PRO ASP LEU SER VAL PHE SEQRES 32 C 606 GLN ASN LEU GLN VAL ILE ARG GLY ARG ILE LEU HIS ASN SEQRES 33 C 606 GLY ALA TYR SER LEU THR LEU GLN GLY LEU GLY ILE SER SEQRES 34 C 606 TRP LEU GLY LEU ARG SER LEU ARG GLU LEU GLY SER GLY SEQRES 35 C 606 LEU ALA LEU ILE HIS HIS ASN THR HIS LEU CYS PHE VAL SEQRES 36 C 606 HIS THR VAL PRO TRP ASP GLN LEU PHE ARG ASN PRO HIS SEQRES 37 C 606 GLN ALA LEU LEU HIS THR ALA ASN ARG PRO GLU ASP GLU SEQRES 38 C 606 CYS VAL GLY GLU GLY LEU ALA CYS HIS GLN LEU CYS ALA SEQRES 39 C 606 ARG GLY HIS CYS TRP GLY PRO GLY PRO THR GLN CYS VAL SEQRES 40 C 606 ASN CYS SER GLN PHE LEU ARG GLY GLN GLU CYS VAL GLU SEQRES 41 C 606 GLU CYS ARG VAL LEU GLN GLY LEU PRO ARG GLU TYR VAL SEQRES 42 C 606 ASN ALA ARG HIS CYS LEU PRO CYS HIS PRO GLU CYS GLN SEQRES 43 C 606 PRO GLN ASN GLY SER VAL THR CYS PHE GLY PRO GLU ALA SEQRES 44 C 606 ASP GLN CYS VAL ALA CYS ALA HIS TYR LYS ASP PRO PRO SEQRES 45 C 606 PHE CYS VAL ALA ARG CYS PRO SER GLY VAL LYS PRO ASP SEQRES 46 C 606 LEU SER TYR MET PRO ILE TRP LYS PHE PRO ASP GLU GLU SEQRES 47 C 606 GLY ALA CYS GLN PRO CYS PRO ILE SEQRES 1 A 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 A 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 A 214 GLN SER ILE SER SER TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 A 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 A 214 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 A 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 A 214 TYR SER THR PRO PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 A 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 A 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 A 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 A 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 A 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 A 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 A 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 A 214 PHE ASN ARG GLY GLU CYS SEQRES 1 B 247 MET GLY TRP SER CYS ILE ILE LEU PHE LEU VAL LEU LEU SEQRES 2 B 247 LEU ALA GLN PRO ALA MET ALA GLN VAL GLN LEU VAL GLN SEQRES 3 B 247 SER GLY ALA GLU VAL LYS LYS PRO GLY ALA SER VAL LYS SEQRES 4 B 247 LEU SER CYS LYS ALA SER GLY TYR THR PHE THR ALA TYR SEQRES 5 B 247 TYR ILE ASN TRP VAL ARG GLN ALA PRO GLY GLN GLY LEU SEQRES 6 B 247 GLU TRP ILE GLY ARG ILE TYR PRO GLY SER GLY TYR THR SEQRES 7 B 247 SER TYR ALA GLN LYS PHE GLN GLY ARG ALA THR LEU THR SEQRES 8 B 247 ALA ASP GLU SER THR SER THR ALA TYR MET GLU LEU SER SEQRES 9 B 247 SER LEU ARG SER GLU ASP THR ALA VAL TYR PHE CYS ALA SEQRES 10 B 247 ARG PRO PRO VAL TYR TYR ASP SER ALA TRP PHE ALA TYR SEQRES 11 B 247 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER SEQRES 12 B 247 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 13 B 247 LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 14 B 247 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 15 B 247 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 16 B 247 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 17 B 247 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 18 B 247 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 19 B 247 VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ALA ALA ALA HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET MAN D 6 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG C 707 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 3(C6 H12 O6) HELIX 1 AA1 THR C 19 GLN C 29 1 11 HELIX 2 AA2 PHE C 51 ILE C 55 5 5 HELIX 3 AA3 LEU C 85 ASP C 88 5 4 HELIX 4 AA4 LEU C 146 PHE C 151 1 6 HELIX 5 AA5 HIS C 152 GLN C 156 5 5 HELIX 6 AA6 LEU C 209 CYS C 213 5 5 HELIX 7 AA7 MET C 325 ARG C 329 5 5 HELIX 8 AA8 ASN C 338 ALA C 343 5 6 HELIX 9 AA9 LEU C 355 ASP C 360 5 6 HELIX 10 AB1 ASP C 362 ASN C 366 5 5 HELIX 11 AB2 GLU C 373 LEU C 381 5 9 HELIX 12 AB3 LEU C 400 GLN C 404 5 5 HELIX 13 AB4 LEU C 414 GLY C 417 5 4 HELIX 14 AB5 PRO C 459 PHE C 464 1 6 HELIX 15 AB6 PRO C 478 GLU C 485 1 8 HELIX 16 AB7 CYS C 493 HIS C 497 5 5 HELIX 17 AB8 GLN A 79 PHE A 83 5 5 HELIX 18 AB9 SER A 121 LYS A 126 1 6 HELIX 19 AC1 THR B 28 TYR B 32 5 5 HELIX 20 AC2 GLN B 62 GLN B 65 5 4 HELIX 21 AC3 ARG B 87 THR B 91 5 5 HELIX 22 AC4 SER B 135 THR B 139 5 5 HELIX 23 AC5 SER B 195 LEU B 197 5 3 SHEET 1 AA1 5 VAL C 3 THR C 5 0 SHEET 2 AA1 5 VAL C 33 GLN C 35 1 O GLN C 35 N CYS C 4 SHEET 3 AA1 5 GLU C 57 VAL C 58 1 O GLU C 57 N VAL C 34 SHEET 4 AA1 5 ILE C 79 VAL C 80 1 O ILE C 79 N VAL C 58 SHEET 5 AA1 5 GLU C 125 ILE C 126 1 O GLU C 125 N VAL C 80 SHEET 1 AA2 5 LEU C 38 THR C 41 0 SHEET 2 AA2 5 VAL C 62 ALA C 65 1 O LEU C 63 N LEU C 40 SHEET 3 AA2 5 TYR C 90 LEU C 95 1 O ALA C 93 N ILE C 64 SHEET 4 AA2 5 GLY C 130 GLN C 134 1 O LEU C 132 N VAL C 94 SHEET 5 AA2 5 THR C 160 ILE C 162 1 O LEU C 161 N ILE C 133 SHEET 1 AA3 2 PHE C 236 ASN C 237 0 SHEET 2 AA3 2 CYS C 242 GLU C 243 -1 O GLU C 243 N PHE C 236 SHEET 1 AA4 2 VAL C 250 TYR C 252 0 SHEET 2 AA4 2 SER C 259 PRO C 261 -1 O MET C 260 N THR C 251 SHEET 1 AA5 2 TYR C 267 PHE C 269 0 SHEET 2 AA5 2 SER C 272 VAL C 274 -1 O VAL C 274 N TYR C 267 SHEET 1 AA6 2 LEU C 282 SER C 283 0 SHEET 2 AA6 2 CYS C 289 THR C 290 -1 O THR C 290 N LEU C 282 SHEET 1 AA7 2 ASN C 297 THR C 301 0 SHEET 2 AA7 2 GLN C 307 LYS C 311 -1 O GLU C 310 N GLN C 298 SHEET 1 AA8 5 CYS C 320 TYR C 321 0 SHEET 2 AA8 5 LYS C 347 PHE C 349 1 O PHE C 349 N CYS C 320 SHEET 3 AA8 5 GLU C 383 ILE C 384 1 O GLU C 383 N ILE C 348 SHEET 4 AA8 5 VAL C 408 ILE C 409 1 O VAL C 408 N ILE C 384 SHEET 5 AA8 5 GLU C 438 LEU C 439 1 O GLU C 438 N ILE C 409 SHEET 1 AA9 5 LEU C 352 PHE C 354 0 SHEET 2 AA9 5 LEU C 388 ILE C 390 1 O TYR C 389 N PHE C 354 SHEET 3 AA9 5 TYR C 419 GLN C 424 1 O THR C 422 N ILE C 390 SHEET 4 AA9 5 LEU C 443 HIS C 447 1 O LEU C 445 N LEU C 421 SHEET 5 AA9 5 LEU C 471 THR C 474 1 O LEU C 472 N ALA C 444 SHEET 1 AB1 4 GLU C 517 CYS C 518 0 SHEET 2 AB1 4 LEU C 513 ARG C 514 -1 N ARG C 514 O GLU C 517 SHEET 3 AB1 4 HIS C 537 LEU C 539 1 O CYS C 538 N LEU C 513 SHEET 4 AB1 4 TYR C 532 VAL C 533 -1 N TYR C 532 O LEU C 539 SHEET 1 AB2 3 MET A 4 SER A 7 0 SHEET 2 AB2 3 VAL A 19 ILE A 29 -1 O ARG A 24 N THR A 5 SHEET 3 AB2 3 PHE A 62 ILE A 75 -1 O LEU A 73 N ILE A 21 SHEET 1 AB3 3 SER A 10 SER A 14 0 SHEET 2 AB3 3 THR A 102 LYS A 107 1 O GLU A 105 N LEU A 11 SHEET 3 AB3 3 ALA A 84 TYR A 86 -1 N TYR A 86 O THR A 102 SHEET 1 AB4 2 LEU A 33 TRP A 35 0 SHEET 2 AB4 2 CYS A 88 GLN A 90 -1 O GLN A 89 N ASN A 34 SHEET 1 AB5 4 SER A 114 PHE A 118 0 SHEET 2 AB5 4 THR A 129 PHE A 139 -1 O LEU A 135 N PHE A 116 SHEET 3 AB5 4 TYR A 173 SER A 182 -1 O LEU A 179 N VAL A 132 SHEET 4 AB5 4 SER A 159 GLU A 161 -1 N GLN A 160 O THR A 178 SHEET 1 AB6 3 LYS A 145 GLN A 147 0 SHEET 2 AB6 3 GLU A 195 THR A 197 -1 O GLU A 195 N GLN A 147 SHEET 3 AB6 3 VAL A 205 THR A 206 -1 O VAL A 205 N VAL A 196 SHEET 1 AB7 2 VAL A 191 TYR A 192 0 SHEET 2 AB7 2 PHE A 209 ASN A 210 -1 O PHE A 209 N TYR A 192 SHEET 1 AB8 4 GLN B 3 SER B 7 0 SHEET 2 AB8 4 VAL B 18 SER B 25 -1 O LYS B 23 N VAL B 5 SHEET 3 AB8 4 MET B 81 LEU B 83 -1 O MET B 81 N LEU B 20 SHEET 4 AB8 4 THR B 69 LEU B 70 -1 N THR B 69 O GLU B 82 SHEET 1 AB9 6 VAL B 11 LYS B 12 0 SHEET 2 AB9 6 THR B 115 VAL B 119 1 O THR B 118 N LYS B 12 SHEET 3 AB9 6 ALA B 92 ALA B 97 -1 N ALA B 92 O VAL B 117 SHEET 4 AB9 6 ILE B 34 GLN B 39 -1 N VAL B 37 O PHE B 95 SHEET 5 AB9 6 LEU B 45 ILE B 51 -1 O ILE B 51 N ILE B 34 SHEET 6 AB9 6 THR B 58 TYR B 60 -1 O SER B 59 N ARG B 50 SHEET 1 AC1 4 SER B 128 LEU B 132 0 SHEET 2 AC1 4 THR B 143 TYR B 153 -1 O GLY B 147 N LEU B 132 SHEET 3 AC1 4 TYR B 184 PRO B 193 -1 O VAL B 190 N LEU B 146 SHEET 4 AC1 4 VAL B 171 THR B 173 -1 N HIS B 172 O VAL B 189 SHEET 1 AC2 3 THR B 159 TRP B 162 0 SHEET 2 AC2 3 CYS B 204 HIS B 208 -1 O ASN B 207 N THR B 159 SHEET 3 AC2 3 THR B 213 VAL B 215 -1 O THR B 213 N HIS B 208 SSBOND 1 CYS C 4 CYS C 31 1555 1555 2.03 SSBOND 2 CYS C 140 CYS C 170 1555 1555 2.03 SSBOND 3 CYS C 173 CYS C 182 1555 1555 2.03 SSBOND 4 CYS C 177 CYS C 190 1555 1555 2.03 SSBOND 5 CYS C 198 CYS C 205 1555 1555 2.03 SSBOND 6 CYS C 202 CYS C 213 1555 1555 2.03 SSBOND 7 CYS C 214 CYS C 222 1555 1555 2.03 SSBOND 8 CYS C 218 CYS C 230 1555 1555 2.03 SSBOND 9 CYS C 233 CYS C 242 1555 1555 2.03 SSBOND 10 CYS C 246 CYS C 273 1555 1555 2.03 SSBOND 11 CYS C 277 CYS C 289 1555 1555 2.03 SSBOND 12 CYS C 293 CYS C 309 1555 1555 2.03 SSBOND 13 CYS C 320 CYS C 345 1555 1555 2.03 SSBOND 14 CYS C 453 CYS C 482 1555 1555 2.03 SSBOND 15 CYS C 489 CYS C 498 1555 1555 2.03 SSBOND 16 CYS C 493 CYS C 506 1555 1555 2.03 SSBOND 17 CYS C 509 CYS C 518 1555 1555 2.04 SSBOND 18 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 19 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 20 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 21 CYS B 148 CYS B 204 1555 1555 2.03 LINK ND2 ASN C 46 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN C 165 C1 NAG C 707 1555 1555 1.44 LINK ND2 ASN C 237 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 6 1555 1555 1.44 LINK O3 MAN D 4 C1 MAN D 5 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 CISPEP 1 SER A 7 PRO A 8 0 -1.13 CISPEP 2 THR A 94 PRO A 95 0 -1.01 CISPEP 3 TYR A 140 PRO A 141 0 -0.08 CISPEP 4 GLU B 156 PRO B 157 0 -0.34 CRYST1 62.790 113.500 113.490 90.00 101.92 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015926 0.000000 0.003362 0.00000 SCALE2 0.000000 0.008811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009006 0.00000