HEADER ATP BINDING PROTEIN 30-MAY-17 5O4P TITLE CRYSTAL STRUCTURE OF AMPYLATED GRP78 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 78 KDA GLUCOSE-REGULATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: I79_019946; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI M15; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1007065; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS BIP/GRP78, AMPYLATION, ATP BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.YAN,R.CHEN,D.RON,R.READ REVDAT 3 07-FEB-24 5O4P 1 REMARK REVDAT 2 10-APR-19 5O4P 1 SOURCE REVDAT 1 01-NOV-17 5O4P 0 JRNL AUTH S.PREISSLER,L.ROHLAND,Y.YAN,R.CHEN,R.J.READ,D.RON JRNL TITL AMPYLATION TARGETS THE RATE-LIMITING STEP OF BIP'S ATPASE JRNL TITL 2 CYCLE FOR ITS FUNCTIONAL INACTIVATION. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 29064368 JRNL DOI 10.7554/ELIFE.29428 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 104104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5399 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7660 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 417 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 679 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : 1.37000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.427 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8182 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7702 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11083 ; 1.261 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17915 ; 0.873 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1043 ; 5.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 361 ;36.116 ;25.402 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1448 ;11.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;14.742 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1293 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9070 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1511 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4172 ; 1.076 ; 2.378 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4171 ; 1.075 ; 2.377 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5215 ; 1.800 ; 3.559 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5216 ; 1.800 ; 3.560 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4010 ; 1.522 ; 2.664 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3955 ; 1.506 ; 2.625 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5785 ; 2.461 ; 3.832 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8779 ; 4.025 ;28.530 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8614 ; 3.819 ;28.227 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 28 548 B 28 548 32408 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 67.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.98900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M LITHIUM SULFATE, 0.1M HEPES REMARK 280 PH7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.32500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 27 REMARK 465 THR A 518 REMARK 465 GLY A 519 REMARK 465 ASN A 520 REMARK 465 ALA A 549 REMARK 465 ALA B 549 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 304 CG CD OE1 NE2 REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LYS A 521 CG CD CE NZ REMARK 470 LYS A 523 CG CD CE NZ REMARK 470 ARG B 49 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 ARG B 297 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 310 CG CD OE1 OE2 REMARK 470 ASP B 410 CG OD1 OD2 REMARK 470 LYS B 521 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 87 52.50 -145.11 REMARK 500 ASN B 87 51.67 -144.64 REMARK 500 SER B 311 72.60 42.66 REMARK 500 LEU B 414 124.01 -37.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1083 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.21 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AMP B 601 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide AMP B 601 and THR B REMARK 800 518 DBREF 5O4P A 28 549 UNP G3I8R9 G3I8R9_CRIGR 28 549 DBREF 5O4P B 28 549 UNP G3I8R9 G3I8R9_CRIGR 28 549 SEQADV 5O4P SER A 27 UNP G3I8R9 EXPRESSION TAG SEQADV 5O4P ALA A 229 UNP G3I8R9 THR 229 CONFLICT SEQADV 5O4P SER B 27 UNP G3I8R9 EXPRESSION TAG SEQADV 5O4P ALA B 229 UNP G3I8R9 THR 229 CONFLICT SEQRES 1 A 523 SER GLY THR VAL VAL GLY ILE ASP LEU GLY THR THR TYR SEQRES 2 A 523 SER CYS VAL GLY VAL PHE LYS ASN GLY ARG VAL GLU ILE SEQRES 3 A 523 ILE ALA ASN ASP GLN GLY ASN ARG ILE THR PRO SER TYR SEQRES 4 A 523 VAL ALA PHE THR PRO GLU GLY GLU ARG LEU ILE GLY ASP SEQRES 5 A 523 ALA ALA LYS ASN GLN LEU THR SER ASN PRO GLU ASN THR SEQRES 6 A 523 VAL PHE ASP ALA LYS ARG LEU ILE GLY ARG THR TRP ASN SEQRES 7 A 523 ASP PRO SER VAL GLN GLN ASP ILE LYS PHE LEU PRO PHE SEQRES 8 A 523 LYS VAL VAL GLU LYS LYS THR LYS PRO TYR ILE GLN VAL SEQRES 9 A 523 ASP ILE GLY GLY GLY GLN THR LYS THR PHE ALA PRO GLU SEQRES 10 A 523 GLU ILE SER ALA MET VAL LEU THR LYS MET LYS GLU THR SEQRES 11 A 523 ALA GLU ALA TYR LEU GLY LYS LYS VAL THR HIS ALA VAL SEQRES 12 A 523 VAL THR VAL PRO ALA TYR PHE ASN ASP ALA GLN ARG GLN SEQRES 13 A 523 ALA THR LYS ASP ALA GLY THR ILE ALA GLY LEU ASN VAL SEQRES 14 A 523 MET ARG ILE ILE ASN GLU PRO THR ALA ALA ALA ILE ALA SEQRES 15 A 523 TYR GLY LEU ASP LYS ARG GLU GLY GLU LYS ASN ILE LEU SEQRES 16 A 523 VAL PHE ASP LEU GLY GLY GLY ALA PHE ASP VAL SER LEU SEQRES 17 A 523 LEU THR ILE ASP ASN GLY VAL PHE GLU VAL VAL ALA THR SEQRES 18 A 523 ASN GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP GLN SEQRES 19 A 523 ARG VAL MET GLU HIS PHE ILE LYS LEU TYR LYS LYS LYS SEQRES 20 A 523 THR GLY LYS ASP VAL ARG LYS ASP ASN ARG ALA VAL GLN SEQRES 21 A 523 LYS LEU ARG ARG GLU VAL GLU LYS ALA LYS ARG ALA LEU SEQRES 22 A 523 SER SER GLN HIS GLN ALA ARG ILE GLU ILE GLU SER PHE SEQRES 23 A 523 PHE GLU GLY GLU ASP PHE SER GLU THR LEU THR ARG ALA SEQRES 24 A 523 LYS PHE GLU GLU LEU ASN MET ASP LEU PHE ARG SER THR SEQRES 25 A 523 MET LYS PRO VAL GLN LYS VAL LEU GLU ASP SER ASP LEU SEQRES 26 A 523 LYS LYS SER ASP ILE ASP GLU ILE VAL LEU VAL GLY GLY SEQRES 27 A 523 SER THR ARG ILE PRO LYS ILE GLN GLN LEU VAL LYS GLU SEQRES 28 A 523 PHE PHE ASN GLY LYS GLU PRO SER ARG GLY ILE ASN PRO SEQRES 29 A 523 ASP GLU ALA VAL ALA TYR GLY ALA ALA VAL GLN ALA GLY SEQRES 30 A 523 VAL LEU SER GLY ASP GLN ASP THR GLY ASP LEU VAL LEU SEQRES 31 A 523 LEU ASP VAL CYS PRO LEU THR LEU GLY ILE GLU THR VAL SEQRES 32 A 523 GLY GLY VAL MET THR LYS LEU ILE PRO ARG ASN THR VAL SEQRES 33 A 523 VAL PRO THR LYS LYS SER GLN ILE PHE SER THR ALA SER SEQRES 34 A 523 ASP ASN GLN PRO THR VAL THR ILE LYS VAL TYR GLU GLY SEQRES 35 A 523 GLU ARG PRO LEU THR LYS ASP ASN HIS LEU LEU GLY THR SEQRES 36 A 523 PHE ASP LEU THR GLY ILE PRO PRO ALA PRO ARG GLY VAL SEQRES 37 A 523 PRO GLN ILE GLU VAL THR PHE GLU ILE ASP VAL ASN GLY SEQRES 38 A 523 ILE LEU ARG VAL THR ALA GLU ASP LYS GLY THR GLY ASN SEQRES 39 A 523 LYS ASN LYS ILE THR ILE THR ASN ASP GLN ASN ARG LEU SEQRES 40 A 523 THR PRO GLU GLU ILE GLU ARG MET VAL ASN ASP ALA GLU SEQRES 41 A 523 LYS PHE ALA SEQRES 1 B 523 SER GLY THR VAL VAL GLY ILE ASP LEU GLY THR THR TYR SEQRES 2 B 523 SER CYS VAL GLY VAL PHE LYS ASN GLY ARG VAL GLU ILE SEQRES 3 B 523 ILE ALA ASN ASP GLN GLY ASN ARG ILE THR PRO SER TYR SEQRES 4 B 523 VAL ALA PHE THR PRO GLU GLY GLU ARG LEU ILE GLY ASP SEQRES 5 B 523 ALA ALA LYS ASN GLN LEU THR SER ASN PRO GLU ASN THR SEQRES 6 B 523 VAL PHE ASP ALA LYS ARG LEU ILE GLY ARG THR TRP ASN SEQRES 7 B 523 ASP PRO SER VAL GLN GLN ASP ILE LYS PHE LEU PRO PHE SEQRES 8 B 523 LYS VAL VAL GLU LYS LYS THR LYS PRO TYR ILE GLN VAL SEQRES 9 B 523 ASP ILE GLY GLY GLY GLN THR LYS THR PHE ALA PRO GLU SEQRES 10 B 523 GLU ILE SER ALA MET VAL LEU THR LYS MET LYS GLU THR SEQRES 11 B 523 ALA GLU ALA TYR LEU GLY LYS LYS VAL THR HIS ALA VAL SEQRES 12 B 523 VAL THR VAL PRO ALA TYR PHE ASN ASP ALA GLN ARG GLN SEQRES 13 B 523 ALA THR LYS ASP ALA GLY THR ILE ALA GLY LEU ASN VAL SEQRES 14 B 523 MET ARG ILE ILE ASN GLU PRO THR ALA ALA ALA ILE ALA SEQRES 15 B 523 TYR GLY LEU ASP LYS ARG GLU GLY GLU LYS ASN ILE LEU SEQRES 16 B 523 VAL PHE ASP LEU GLY GLY GLY ALA PHE ASP VAL SER LEU SEQRES 17 B 523 LEU THR ILE ASP ASN GLY VAL PHE GLU VAL VAL ALA THR SEQRES 18 B 523 ASN GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP GLN SEQRES 19 B 523 ARG VAL MET GLU HIS PHE ILE LYS LEU TYR LYS LYS LYS SEQRES 20 B 523 THR GLY LYS ASP VAL ARG LYS ASP ASN ARG ALA VAL GLN SEQRES 21 B 523 LYS LEU ARG ARG GLU VAL GLU LYS ALA LYS ARG ALA LEU SEQRES 22 B 523 SER SER GLN HIS GLN ALA ARG ILE GLU ILE GLU SER PHE SEQRES 23 B 523 PHE GLU GLY GLU ASP PHE SER GLU THR LEU THR ARG ALA SEQRES 24 B 523 LYS PHE GLU GLU LEU ASN MET ASP LEU PHE ARG SER THR SEQRES 25 B 523 MET LYS PRO VAL GLN LYS VAL LEU GLU ASP SER ASP LEU SEQRES 26 B 523 LYS LYS SER ASP ILE ASP GLU ILE VAL LEU VAL GLY GLY SEQRES 27 B 523 SER THR ARG ILE PRO LYS ILE GLN GLN LEU VAL LYS GLU SEQRES 28 B 523 PHE PHE ASN GLY LYS GLU PRO SER ARG GLY ILE ASN PRO SEQRES 29 B 523 ASP GLU ALA VAL ALA TYR GLY ALA ALA VAL GLN ALA GLY SEQRES 30 B 523 VAL LEU SER GLY ASP GLN ASP THR GLY ASP LEU VAL LEU SEQRES 31 B 523 LEU ASP VAL CYS PRO LEU THR LEU GLY ILE GLU THR VAL SEQRES 32 B 523 GLY GLY VAL MET THR LYS LEU ILE PRO ARG ASN THR VAL SEQRES 33 B 523 VAL PRO THR LYS LYS SER GLN ILE PHE SER THR ALA SER SEQRES 34 B 523 ASP ASN GLN PRO THR VAL THR ILE LYS VAL TYR GLU GLY SEQRES 35 B 523 GLU ARG PRO LEU THR LYS ASP ASN HIS LEU LEU GLY THR SEQRES 36 B 523 PHE ASP LEU THR GLY ILE PRO PRO ALA PRO ARG GLY VAL SEQRES 37 B 523 PRO GLN ILE GLU VAL THR PHE GLU ILE ASP VAL ASN GLY SEQRES 38 B 523 ILE LEU ARG VAL THR ALA GLU ASP LYS GLY THR GLY ASN SEQRES 39 B 523 LYS ASN LYS ILE THR ILE THR ASN ASP GLN ASN ARG LEU SEQRES 40 B 523 THR PRO GLU GLU ILE GLU ARG MET VAL ASN ASP ALA GLU SEQRES 41 B 523 LYS PHE ALA HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET AMP B 601 5 HET SO4 B 602 5 HET SO4 B 603 5 HET SO4 B 604 5 HET SO4 B 605 5 HET SO4 B 606 5 HET SO4 B 607 5 HET SO4 B 608 5 HET SO4 B 609 5 HETNAM SO4 SULFATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 SO4 13(O4 S 2-) FORMUL 8 AMP C10 H14 N5 O7 P FORMUL 17 HOH *679(H2 O) HELIX 1 AA1 GLY A 77 GLN A 83 1 7 HELIX 2 AA2 ASN A 87 GLU A 89 5 3 HELIX 3 AA3 ASP A 94 LEU A 98 5 5 HELIX 4 AA4 ASP A 105 LYS A 113 1 9 HELIX 5 AA5 ALA A 141 GLY A 162 1 22 HELIX 6 AA6 ASN A 177 ALA A 191 1 15 HELIX 7 AA7 GLU A 201 LEU A 211 1 11 HELIX 8 AA8 GLY A 254 GLY A 275 1 22 HELIX 9 AA9 ASP A 281 LEU A 299 1 19 HELIX 10 AB1 ARG A 324 THR A 338 1 15 HELIX 11 AB2 THR A 338 SER A 349 1 12 HELIX 12 AB3 LYS A 352 ILE A 356 5 5 HELIX 13 AB4 GLY A 363 ARG A 367 5 5 HELIX 14 AB5 ILE A 368 PHE A 379 1 12 HELIX 15 AB6 GLU A 392 SER A 406 1 15 HELIX 16 AB7 ASP A 408 GLY A 412 5 5 HELIX 17 AB8 LEU A 472 ASN A 476 5 5 HELIX 18 AB9 THR A 534 PHE A 548 1 15 HELIX 19 AC1 GLY B 77 GLN B 83 1 7 HELIX 20 AC2 ASN B 87 GLU B 89 5 3 HELIX 21 AC3 ASP B 94 LEU B 98 5 5 HELIX 22 AC4 ASP B 105 LYS B 113 1 9 HELIX 23 AC5 ALA B 141 GLY B 162 1 22 HELIX 24 AC6 ASN B 177 ALA B 191 1 15 HELIX 25 AC7 GLU B 201 LEU B 211 1 11 HELIX 26 AC8 GLY B 254 GLY B 275 1 22 HELIX 27 AC9 ASP B 281 LEU B 299 1 19 HELIX 28 AD1 ARG B 324 THR B 338 1 15 HELIX 29 AD2 THR B 338 SER B 349 1 12 HELIX 30 AD3 LYS B 352 ILE B 356 5 5 HELIX 31 AD4 GLY B 363 ARG B 367 5 5 HELIX 32 AD5 ILE B 368 PHE B 379 1 12 HELIX 33 AD6 GLU B 392 GLY B 407 1 16 HELIX 34 AD7 LEU B 472 ASN B 476 5 5 HELIX 35 AD8 THR B 534 PHE B 548 1 15 SHEET 1 AA1 3 ARG A 49 ILE A 52 0 SHEET 2 AA1 3 TYR A 39 LYS A 46 -1 N VAL A 44 O GLU A 51 SHEET 3 AA1 3 THR A 62 PRO A 63 -1 O THR A 62 N SER A 40 SHEET 1 AA2 5 ARG A 49 ILE A 52 0 SHEET 2 AA2 5 TYR A 39 LYS A 46 -1 N VAL A 44 O GLU A 51 SHEET 3 AA2 5 VAL A 31 ASP A 34 -1 N ASP A 34 O CYS A 41 SHEET 4 AA2 5 HIS A 167 VAL A 172 1 O VAL A 169 N ILE A 33 SHEET 5 AA2 5 ASN A 194 ASN A 200 1 O ASN A 194 N ALA A 168 SHEET 1 AA3 3 ARG A 74 ILE A 76 0 SHEET 2 AA3 3 VAL A 66 PHE A 68 -1 N ALA A 67 O LEU A 75 SHEET 3 AA3 3 THR A 91 VAL A 92 -1 O VAL A 92 N VAL A 66 SHEET 1 AA4 3 LYS A 118 LYS A 122 0 SHEET 2 AA4 3 LYS A 125 ASP A 131 -1 O TYR A 127 N VAL A 120 SHEET 3 AA4 3 THR A 137 PHE A 140 -1 O PHE A 140 N ILE A 128 SHEET 1 AA5 6 GLU A 358 VAL A 362 0 SHEET 2 AA5 6 GLU A 217 LEU A 225 1 N LEU A 221 O VAL A 360 SHEET 3 AA5 6 PHE A 230 ASP A 238 -1 O LEU A 235 N ILE A 220 SHEET 4 AA5 6 VAL A 241 ASP A 250 -1 O ASP A 250 N PHE A 230 SHEET 5 AA5 6 VAL A 415 VAL A 419 1 O VAL A 415 N PHE A 242 SHEET 6 AA5 6 VAL A 442 VAL A 443 -1 O VAL A 443 N ASP A 418 SHEET 1 AA6 2 GLN A 304 PHE A 313 0 SHEET 2 AA6 2 GLU A 316 THR A 323 -1 O GLU A 320 N ILE A 307 SHEET 1 AA7 5 VAL A 432 ILE A 437 0 SHEET 2 AA7 5 LEU A 424 THR A 428 -1 N LEU A 424 O LEU A 436 SHEET 3 AA7 5 VAL A 461 GLU A 467 -1 O TYR A 466 N GLY A 425 SHEET 4 AA7 5 HIS A 477 THR A 485 -1 O LEU A 484 N VAL A 461 SHEET 5 AA7 5 THR A 525 ASP A 529 -1 O THR A 527 N ASP A 483 SHEET 1 AA8 3 THR A 445 PHE A 451 0 SHEET 2 AA8 3 ILE A 497 ILE A 503 -1 O PHE A 501 N LYS A 447 SHEET 3 AA8 3 LEU A 509 ASP A 515 -1 O THR A 512 N THR A 500 SHEET 1 AA9 3 ARG B 49 ILE B 52 0 SHEET 2 AA9 3 TYR B 39 LYS B 46 -1 N VAL B 44 O GLU B 51 SHEET 3 AA9 3 THR B 62 PRO B 63 -1 O THR B 62 N SER B 40 SHEET 1 AB1 5 ARG B 49 ILE B 52 0 SHEET 2 AB1 5 TYR B 39 LYS B 46 -1 N VAL B 44 O GLU B 51 SHEET 3 AB1 5 VAL B 31 ASP B 34 -1 N ASP B 34 O CYS B 41 SHEET 4 AB1 5 HIS B 167 VAL B 172 1 O VAL B 169 N ILE B 33 SHEET 5 AB1 5 ASN B 194 ASN B 200 1 O ASN B 194 N ALA B 168 SHEET 1 AB2 3 ARG B 74 ILE B 76 0 SHEET 2 AB2 3 VAL B 66 PHE B 68 -1 N ALA B 67 O LEU B 75 SHEET 3 AB2 3 THR B 91 VAL B 92 -1 O VAL B 92 N VAL B 66 SHEET 1 AB3 3 LYS B 118 LYS B 122 0 SHEET 2 AB3 3 LYS B 125 ASP B 131 -1 O TYR B 127 N VAL B 120 SHEET 3 AB3 3 THR B 137 PHE B 140 -1 O PHE B 140 N ILE B 128 SHEET 1 AB4 5 GLU B 358 VAL B 362 0 SHEET 2 AB4 5 GLU B 217 LEU B 225 1 N LEU B 221 O VAL B 360 SHEET 3 AB4 5 PHE B 230 ASP B 238 -1 O LEU B 235 N ILE B 220 SHEET 4 AB4 5 VAL B 241 ASP B 250 -1 O ASP B 250 N PHE B 230 SHEET 5 AB4 5 VAL B 415 LEU B 417 1 O VAL B 415 N PHE B 242 SHEET 1 AB5 2 GLN B 304 PHE B 313 0 SHEET 2 AB5 2 GLU B 316 THR B 323 -1 O GLU B 320 N ILE B 307 SHEET 1 AB6 8 VAL B 432 ILE B 437 0 SHEET 2 AB6 8 LEU B 424 THR B 428 -1 N LEU B 424 O LEU B 436 SHEET 3 AB6 8 VAL B 461 GLU B 467 -1 O TYR B 466 N GLY B 425 SHEET 4 AB6 8 HIS B 477 THR B 485 -1 O LEU B 484 N VAL B 461 SHEET 5 AB6 8 LYS B 523 ASP B 529 -1 O THR B 527 N ASP B 483 SHEET 6 AB6 8 LEU B 509 ASP B 515 -1 N ALA B 513 O ILE B 524 SHEET 7 AB6 8 ILE B 497 ILE B 503 -1 N THR B 500 O THR B 512 SHEET 8 AB6 8 THR B 445 PHE B 451 -1 N LYS B 447 O PHE B 501 LINK CB THR B 518 O1P AMP B 601 1555 1555 1.33 CISPEP 1 VAL A 443 PRO A 444 0 0.32 CISPEP 2 VAL B 443 PRO B 444 0 -0.53 SITE 1 AC1 6 ASN A 59 ARG A 60 ILE A 61 ASN A 457 SITE 2 AC1 6 HOH A 735 HOH A 904 SITE 1 AC2 10 THR A 37 LYS A 96 GLU A 201 GLY A 226 SITE 2 AC2 10 GLY A 227 GLY A 228 ALA A 229 HOH A 701 SITE 3 AC2 10 HOH A 746 HOH A 828 SITE 1 AC3 5 LYS A 287 ARG A 290 ILE A 309 GLU A 310 SITE 2 AC3 5 SER A 311 SITE 1 AC4 6 GLN A 182 LYS A 185 ARG A 532 HOH A 731 SITE 2 AC4 6 HOH A 781 HOH A 804 SITE 1 AC5 2 ASN A 528 HOH A 842 SITE 1 AC6 6 ASN B 59 ARG B 60 ILE B 61 ASN B 457 SITE 2 AC6 6 HOH B 766 HOH B 814 SITE 1 AC7 12 GLY B 36 THR B 37 LYS B 96 GLU B 201 SITE 2 AC7 12 GLY B 226 GLY B 227 GLY B 228 ALA B 229 SITE 3 AC7 12 HOH B 719 HOH B 728 HOH B 844 HOH B 901 SITE 1 AC8 5 GLN B 182 LYS B 185 ARG B 532 HOH B 735 SITE 2 AC8 5 HOH B 739 SITE 1 AC9 3 ASN B 528 HOH B 787 HOH B 829 SITE 1 AD1 4 LYS A 474 ASP B 333 ARG B 336 HOH B 704 SITE 1 AD2 3 GLN B 302 HIS B 303 GLN B 304 SITE 1 AD3 3 GLN B 302 ALA B 305 ARG B 306 SITE 1 AD4 7 ILE B 388 ASN B 389 GLU B 392 ALA B 393 SITE 2 AD4 7 TYR B 396 PRO B 491 HOH B 885 SITE 1 AD5 3 GLY B 517 GLY B 519 ASN B 520 CRYST1 68.330 118.650 83.150 90.00 96.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014635 0.000000 0.001768 0.00000 SCALE2 0.000000 0.008428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012114 0.00000