HEADER HYDROLASE 31-MAY-17 5O4Z TITLE STRUCTURE OF THE INACTIVE T.MARITIMA PDE (TM1595) D80N D154N MUTANT TITLE 2 WITH SUBSTRATE 5'-PAPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DHH/DHHA1-TYPE PHOSPHODIESTERASE TM1595; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM_1595; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHODIESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.WITTE,D.DREXLER,M.MUELLER REVDAT 5 17-JAN-24 5O4Z 1 REMARK REVDAT 4 20-FEB-19 5O4Z 1 SOURCE REVDAT 3 13-DEC-17 5O4Z 1 JRNL REVDAT 2 15-NOV-17 5O4Z 1 JRNL REVDAT 1 25-OCT-17 5O4Z 0 JRNL AUTH D.J.DREXLER,M.MULLER,C.A.ROJAS-CORDOVA,A.M.BANDERA,G.WITTE JRNL TITL STRUCTURAL AND BIOPHYSICAL ANALYSIS OF THE SOLUBLE JRNL TITL 2 DHH/DHHA1-TYPE PHOSPHODIESTERASE TM1595 FROM THERMOTOGA JRNL TITL 3 MARITIMA. JRNL REF STRUCTURE V. 25 1887 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 29107484 JRNL DOI 10.1016/J.STR.2017.10.001 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 42286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 2014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9296 - 4.0961 1.00 3074 152 0.1513 0.1677 REMARK 3 2 4.0961 - 3.2516 1.00 2979 135 0.1432 0.1563 REMARK 3 3 3.2516 - 2.8406 1.00 2943 129 0.1650 0.1925 REMARK 3 4 2.8406 - 2.5809 1.00 2910 145 0.1689 0.2052 REMARK 3 5 2.5809 - 2.3960 1.00 2894 177 0.1688 0.1915 REMARK 3 6 2.3960 - 2.2547 0.99 2886 134 0.1709 0.1904 REMARK 3 7 2.2547 - 2.1418 0.99 2877 148 0.1911 0.2324 REMARK 3 8 2.1418 - 2.0486 0.99 2847 155 0.2061 0.2109 REMARK 3 9 2.0486 - 1.9697 0.99 2859 152 0.2008 0.2156 REMARK 3 10 1.9697 - 1.9017 0.95 2758 116 0.2836 0.3301 REMARK 3 11 1.9017 - 1.8423 0.95 2732 143 0.2730 0.3196 REMARK 3 12 1.8423 - 1.7896 0.99 2837 152 0.2632 0.3003 REMARK 3 13 1.7896 - 1.7425 0.99 2891 129 0.3096 0.3414 REMARK 3 14 1.7425 - 1.7000 0.98 2785 147 0.3714 0.3875 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2748 REMARK 3 ANGLE : 0.763 3733 REMARK 3 CHIRALITY : 0.055 405 REMARK 3 PLANARITY : 0.005 473 REMARK 3 DIHEDRAL : 11.660 1622 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID -2 THROUGH 320) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5698 -9.7724 -14.4268 REMARK 3 T TENSOR REMARK 3 T11: 0.2467 T22: 0.2740 REMARK 3 T33: 0.2264 T12: -0.0126 REMARK 3 T13: 0.0014 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.8628 L22: 1.8985 REMARK 3 L33: 0.9496 L12: 0.7825 REMARK 3 L13: -0.0648 L23: 0.1099 REMARK 3 S TENSOR REMARK 3 S11: 0.1237 S12: -0.1410 S13: 0.0020 REMARK 3 S21: 0.2119 S22: -0.1004 S23: 0.0152 REMARK 3 S31: -0.0483 S32: -0.0636 S33: -0.0269 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 1 THROUGH 2) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2838 -8.2628 -14.1779 REMARK 3 T TENSOR REMARK 3 T11: 0.5590 T22: 0.4875 REMARK 3 T33: 0.4772 T12: -0.1133 REMARK 3 T13: -0.0573 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.3677 L22: 0.9397 REMARK 3 L33: 1.7081 L12: 0.1003 REMARK 3 L13: -0.3110 L23: 0.3632 REMARK 3 S TENSOR REMARK 3 S11: 0.2090 S12: 0.0549 S13: -0.1101 REMARK 3 S21: 0.0370 S22: 0.0986 S23: 0.0383 REMARK 3 S31: 0.1102 S32: 0.0243 S33: -0.1989 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42319 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5O1U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AMMONIUMSULFATE 0.1 M SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.21500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.21500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.83500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.91500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.83500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.91500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.21500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.83500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.91500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.21500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.83500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.91500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -61.21500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 635 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 672 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 698 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 740 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 742 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 749 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLU A 321 REMARK 465 SER A 322 REMARK 465 GLU A 323 REMARK 465 LYS A 324 REMARK 465 ILE A 325 REMARK 465 PRO A 326 REMARK 465 GLU A 327 REMARK 465 GLY A 328 REMARK 465 ASP A 329 REMARK 465 VAL A 330 REMARK 465 LEU A 331 REMARK 465 GLY A 332 REMARK 465 GLY A 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' A A 401 P A A 402 1.62 REMARK 500 ND2 ASN A 80 O HOH A 501 2.12 REMARK 500 OD1 ASP A 221 O HOH A 502 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 258 -166.38 -68.43 REMARK 500 TRP A 271 -23.72 -148.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 A A 402 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5O1U RELATED DB: PDB REMARK 900 SAME PROTEIN WITH AMP/MN REMARK 900 RELATED ID: 5O25 RELATED DB: PDB REMARK 900 SAME PROTEIN IN APO-STATE DBREF 5O4Z A 1 333 UNP Q9X1T1 Q9X1T1_THEMA 1 333 SEQADV 5O4Z GLY A -4 UNP Q9X1T1 EXPRESSION TAG SEQADV 5O4Z SER A -3 UNP Q9X1T1 EXPRESSION TAG SEQADV 5O4Z GLY A -2 UNP Q9X1T1 EXPRESSION TAG SEQADV 5O4Z SER A -1 UNP Q9X1T1 EXPRESSION TAG SEQADV 5O4Z GLY A 0 UNP Q9X1T1 EXPRESSION TAG SEQADV 5O4Z ASN A 80 UNP Q9X1T1 ASP 80 ENGINEERED MUTATION SEQADV 5O4Z ASN A 154 UNP Q9X1T1 ASP 154 ENGINEERED MUTATION SEQRES 1 A 338 GLY SER GLY SER GLY MET ASP GLU ILE VAL LYS VAL LEU SEQRES 2 A 338 SER GLN HIS ASP ARG ILE LEU VAL VAL GLY HIS ILE MET SEQRES 3 A 338 PRO ASP GLY ASP CYS VAL SER SER VAL LEU SER LEU THR SEQRES 4 A 338 LEU GLY LEU GLU LYS LEU GLY LYS GLU VAL LYS ALA ALA SEQRES 5 A 338 VAL ASP TYR LYS ILE PRO TYR VAL PHE GLU LYS PHE PRO SEQRES 6 A 338 TYR ILE ASP LYS ILE GLU GLU ASN PRO ASN PHE ASP PRO SEQRES 7 A 338 GLU LEU LEU VAL VAL VAL ASN ALA SER SER PRO ASP ARG SEQRES 8 A 338 ILE GLY LYS PHE GLN ASP LEU LEU ASP LYS VAL PRO SER SEQRES 9 A 338 VAL VAL ILE ASP HIS HIS SER THR ASN THR ASN PHE GLY SEQRES 10 A 338 ASN TRP ASN TRP VAL ASP PRO SER PHE ALA ALA THR ALA SEQRES 11 A 338 GLN MET ILE PHE ARG ILE ASN LYS ALA LEU GLY VAL GLU SEQRES 12 A 338 TYR ASP SER ASN LEU ALA THR LEU ASN TYR LEU GLY ILE SEQRES 13 A 338 ALA THR ASN THR GLY PHE PHE ARG HIS SER ASN ALA ASP SEQRES 14 A 338 VAL ARG VAL PHE GLU ASP ALA TYR LYS LEU VAL LYS MET SEQRES 15 A 338 GLY ALA ASP ALA HIS PHE VAL ALA LYS GLU ILE LEU GLU SEQRES 16 A 338 ASN LYS ARG PHE GLU GLN PHE LYS LEU PHE ALA GLU VAL SEQRES 17 A 338 LEU GLU ARG LEU GLN LEU LEU GLU ASN GLY LYS ILE ALA SEQRES 18 A 338 TYR SER TYR ILE ASP TYR ASP THR TYR LEU ARG HIS ASN SEQRES 19 A 338 CYS THR ASP GLU ASP SER ALA GLY PHE VAL GLY GLU LEU SEQRES 20 A 338 ARG SER ILE ARG GLY VAL GLU VAL ALA VAL LEU PHE MET SEQRES 21 A 338 GLU PHE PRO ARG GLY LYS ILE HIS VAL SER MET ARG SER SEQRES 22 A 338 LYS ASP TRP PHE ASN VAL ASN GLU VAL ALA PHE GLU LEU SEQRES 23 A 338 GLY GLY GLY GLY HIS PRO ARG ALA ALA GLY VAL THR PHE SEQRES 24 A 338 GLU GLY LYS LYS ILE GLU GLU VAL ILE PRO ARG VAL ILE SEQRES 25 A 338 ASN HIS LEU LEU LYS LYS PHE LYS GLU GLY VAL GLU SER SEQRES 26 A 338 GLU SER GLU LYS ILE PRO GLU GLY ASP VAL LEU GLY GLY HET A A 401 23 HET A A 402 22 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET GOL A 409 6 HET GOL A 410 6 HET CL A 411 1 HET CL A 412 1 HETNAM A ADENOSINE-5'-MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 A 2(C10 H14 N5 O7 P) FORMUL 4 SO4 6(O4 S 2-) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 12 CL 2(CL 1-) FORMUL 14 HOH *249(H2 O) HELIX 1 AA1 GLY A 0 HIS A 11 1 12 HELIX 2 AA2 ASP A 23 LEU A 40 1 18 HELIX 3 AA3 PRO A 53 GLU A 57 5 5 HELIX 4 AA4 TYR A 61 ASP A 63 5 3 HELIX 5 AA5 SER A 83 LYS A 96 5 14 HELIX 6 AA6 ALA A 123 GLY A 136 1 14 HELIX 7 AA7 ASP A 140 THR A 155 1 16 HELIX 8 AA8 ASP A 164 MET A 177 1 14 HELIX 9 AA9 ASP A 180 GLU A 190 1 11 HELIX 10 AB1 ARG A 193 LEU A 207 1 15 HELIX 11 AB2 ASP A 221 HIS A 228 1 8 HELIX 12 AB3 GLY A 237 SER A 244 1 8 HELIX 13 AB4 ASN A 273 LEU A 281 1 9 HELIX 14 AB5 LYS A 298 GLU A 319 1 22 SHEET 1 AA1 6 ILE A 65 GLU A 66 0 SHEET 2 AA1 6 GLU A 43 ALA A 47 1 N ALA A 46 O GLU A 66 SHEET 3 AA1 6 ARG A 13 VAL A 17 1 N VAL A 16 O LYS A 45 SHEET 4 AA1 6 LEU A 75 VAL A 79 1 O VAL A 77 N VAL A 17 SHEET 5 AA1 6 SER A 99 ASP A 103 1 O VAL A 100 N VAL A 78 SHEET 6 AA1 6 TRP A 114 VAL A 117 1 O TRP A 116 N VAL A 101 SHEET 1 AA2 6 GLN A 208 LEU A 210 0 SHEET 2 AA2 6 ILE A 215 ILE A 220 -1 O TYR A 217 N GLN A 208 SHEET 3 AA2 6 VAL A 250 GLU A 256 1 O GLU A 256 N ILE A 220 SHEET 4 AA2 6 LYS A 261 SER A 268 -1 O HIS A 263 N MET A 255 SHEET 5 AA2 6 ALA A 289 GLU A 295 -1 O VAL A 292 N VAL A 264 SHEET 6 AA2 6 GLY A 284 HIS A 286 -1 N HIS A 286 O ALA A 289 CISPEP 1 PHE A 257 PRO A 258 0 -8.06 SITE 1 AC1 20 HIS A 105 HIS A 263 SER A 265 ARG A 267 SITE 2 AC1 20 GLY A 283 GLY A 284 GLY A 285 HIS A 286 SITE 3 AC1 20 ALA A 289 ALA A 290 GLY A 291 THR A 293 SITE 4 AC1 20 A A 402 GOL A 409 HOH A 511 HOH A 546 SITE 5 AC1 20 HOH A 611 HOH A 616 HOH A 621 HOH A 629 SITE 1 AC2 17 HIS A 104 HIS A 105 THR A 153 ASN A 154 SITE 2 AC2 17 GLY A 156 HIS A 160 SER A 161 ASN A 162 SITE 3 AC2 17 ARG A 267 HIS A 286 ARG A 288 ALA A 289 SITE 4 AC2 17 A A 401 SO4 A 407 HOH A 579 HOH A 603 SITE 5 AC2 17 HOH A 638 SITE 1 AC3 4 GLU A 66 GLU A 67 ASN A 68 HOH A 552 SITE 1 AC4 3 ARG A 130 ARG A 166 HOH A 640 SITE 1 AC5 3 ASP A 140 SER A 141 HOH A 505 SITE 1 AC6 2 LYS A 192 GLU A 241 SITE 1 AC7 8 ARG A 159 HIS A 160 GLY A 237 GLY A 240 SITE 2 AC7 8 ARG A 243 ARG A 267 A A 402 HOH A 606 SITE 1 AC8 6 LEU A 281 GLY A 282 VAL A 292 THR A 293 SITE 2 AC8 6 PHE A 294 HOH A 636 SITE 1 AC9 4 ARG A 86 A A 401 HOH A 568 HOH A 621 SITE 1 AD1 5 GLY A 41 TYR A 219 HOH A 525 HOH A 557 SITE 2 AD1 5 HOH A 631 SITE 1 AD2 1 TYR A 61 CRYST1 71.670 87.830 122.430 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008168 0.00000