HEADER TRANSFERASE 06-JUN-17 5O6K TITLE STRUCTURE OF POLYPHOSPHATE KINASE FROM MEIOTHERMUS RUBER N121D COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEIOTHERMUS RUBER H328; SOURCE 3 ORGANISM_TAXID: 1297799; SOURCE 4 GENE: MRH_2468; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYPHOSPHATE KINASE TYPE 2 CLASS III, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.KEMPER,S.GERHARDT,O.EINSLE REVDAT 3 17-JAN-24 5O6K 1 REMARK REVDAT 2 11-APR-18 5O6K 1 JRNL REVDAT 1 21-MAR-18 5O6K 0 JRNL AUTH A.E.PARNELL,S.MORDHORST,F.KEMPER,M.GIURRANDINO,J.P.PRINCE, JRNL AUTH 2 N.J.SCHWARZER,A.HOFER,D.WOHLWEND,H.J.JESSEN,S.GERHARDT, JRNL AUTH 3 O.EINSLE,P.C.F.OYSTON,J.N.ANDEXER,P.L.ROACH JRNL TITL SUBSTRATE RECOGNITION AND MECHANISM REVEALED BY LIGAND-BOUND JRNL TITL 2 POLYPHOSPHATE KINASE 2 STRUCTURES. JRNL REF PROC. NATL. ACAD. SCI. V. 115 3350 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29531036 JRNL DOI 10.1073/PNAS.1710741115 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 29892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9180 - 6.4525 0.99 2774 141 0.2107 0.2427 REMARK 3 2 6.4525 - 5.1234 1.00 2641 136 0.2416 0.2689 REMARK 3 3 5.1234 - 4.4763 1.00 2610 129 0.2183 0.2417 REMARK 3 4 4.4763 - 4.0673 1.00 2577 128 0.2296 0.2477 REMARK 3 5 4.0673 - 3.7759 1.00 2565 144 0.2511 0.2942 REMARK 3 6 3.7759 - 3.5533 1.00 2557 135 0.2870 0.3390 REMARK 3 7 3.5533 - 3.3754 1.00 2564 137 0.3015 0.3228 REMARK 3 8 3.3754 - 3.2285 1.00 2549 137 0.3143 0.3728 REMARK 3 9 3.2285 - 3.1043 0.99 2525 138 0.3213 0.3784 REMARK 3 10 3.1043 - 2.9972 1.00 2512 149 0.3569 0.3173 REMARK 3 11 2.9972 - 2.9035 0.99 2515 129 0.3861 0.4449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8922 REMARK 3 ANGLE : 0.504 12057 REMARK 3 CHIRALITY : 0.041 1245 REMARK 3 PLANARITY : 0.004 1562 REMARK 3 DIHEDRAL : 17.764 5355 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -42.2016 0.3619 9.8445 REMARK 3 T TENSOR REMARK 3 T11: 0.6426 T22: 0.4912 REMARK 3 T33: 0.6195 T12: 0.0009 REMARK 3 T13: 0.0133 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.1233 L22: 0.2941 REMARK 3 L33: 1.3127 L12: -0.0955 REMARK 3 L13: 0.1346 L23: 0.1776 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: 0.0626 S13: 0.0764 REMARK 3 S21: 0.0635 S22: 0.0232 S23: -0.1816 REMARK 3 S31: -0.0628 S32: 0.1435 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30049 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.31700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 1.70900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5LC9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/HCL PH 8.5 27 % (W/V) PEG REMARK 280 3350 200 MM LI2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.41800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 83.27600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 83.27600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.12700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 83.27600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 83.27600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.70900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 83.27600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.27600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.12700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 83.27600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.27600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.70900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.41800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 259 REMARK 465 ALA A 260 REMARK 465 SER A 261 REMARK 465 GLU A 262 REMARK 465 LYS A 263 REMARK 465 ILE A 264 REMARK 465 VAL A 265 REMARK 465 ILE A 266 REMARK 465 GLU A 267 REMARK 465 PRO B 257 REMARK 465 GLU B 258 REMARK 465 THR B 259 REMARK 465 ALA B 260 REMARK 465 SER B 261 REMARK 465 GLU B 262 REMARK 465 LYS B 263 REMARK 465 ILE B 264 REMARK 465 VAL B 265 REMARK 465 ILE B 266 REMARK 465 GLU B 267 REMARK 465 ARG C 193 REMARK 465 MET C 194 REMARK 465 GLY C 195 REMARK 465 THR C 259 REMARK 465 ALA C 260 REMARK 465 SER C 261 REMARK 465 GLU C 262 REMARK 465 ARG D 193 REMARK 465 GLU D 258 REMARK 465 THR D 259 REMARK 465 ALA D 260 REMARK 465 SER D 261 REMARK 465 GLU D 262 REMARK 465 GLU D 267 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3 PO4 A 302 O7 DPO B 302 4444 1.26 REMARK 500 NH2 ARG A 201 O LEU D 183 4445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 7 C PRO B 8 N 0.146 REMARK 500 GLN C 7 C PRO C 8 N 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 78 30.03 -98.40 REMARK 500 ARG A 101 -169.28 -109.88 REMARK 500 ARG A 122 147.58 63.95 REMARK 500 LEU A 129 -77.68 -121.86 REMARK 500 LEU A 202 37.60 -91.28 REMARK 500 PRO A 257 -147.39 -73.65 REMARK 500 PHE B 78 31.19 -98.53 REMARK 500 ARG B 101 -169.65 -110.22 REMARK 500 ARG B 122 134.27 63.90 REMARK 500 SER B 123 -163.02 -129.44 REMARK 500 LEU B 129 -77.34 -121.52 REMARK 500 MET B 194 6.27 -59.80 REMARK 500 LEU B 202 37.38 -96.14 REMARK 500 ARG C 101 -169.40 -111.34 REMARK 500 ARG C 122 165.32 65.77 REMARK 500 LEU C 129 -75.28 -119.80 REMARK 500 THR D 22 32.94 -140.31 REMARK 500 ARG D 101 -169.71 -110.18 REMARK 500 ARG D 122 155.39 64.44 REMARK 500 LEU D 129 -76.12 -122.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PO4 D 302 and LYS D REMARK 800 29 DBREF1 5O6K A 1 267 UNP A0A0S7ASE9_MEIRU DBREF2 5O6K A A0A0S7ASE9 14 280 DBREF1 5O6K B 1 267 UNP A0A0S7ASE9_MEIRU DBREF2 5O6K B A0A0S7ASE9 14 280 DBREF1 5O6K C 1 267 UNP A0A0S7ASE9_MEIRU DBREF2 5O6K C A0A0S7ASE9 14 280 DBREF1 5O6K D 1 267 UNP A0A0S7ASE9_MEIRU DBREF2 5O6K D A0A0S7ASE9 14 280 SEQADV 5O6K ASP A 121 UNP A0A0S7ASE ASN 134 ENGINEERED MUTATION SEQADV 5O6K ASP B 121 UNP A0A0S7ASE ASN 134 ENGINEERED MUTATION SEQADV 5O6K ASP C 121 UNP A0A0S7ASE ASN 134 ENGINEERED MUTATION SEQADV 5O6K ASP D 121 UNP A0A0S7ASE ASN 134 ENGINEERED MUTATION SEQRES 1 A 267 MET LYS LYS TYR ARG VAL GLN PRO ASP GLY ARG PHE GLU SEQRES 2 A 267 LEU LYS ARG PHE ASP PRO ASP ASP THR SER ALA PHE GLU SEQRES 3 A 267 GLY GLY LYS GLN ALA ALA LEU GLU ALA LEU ALA VAL LEU SEQRES 4 A 267 ASN ARG ARG LEU GLU LYS LEU GLN GLU LEU LEU TYR ALA SEQRES 5 A 267 GLU GLY GLN HIS LYS VAL LEU VAL VAL LEU GLN ALA MET SEQRES 6 A 267 ASP ALA GLY GLY LYS ASP GLY THR ILE ARG VAL VAL PHE SEQRES 7 A 267 ASP GLY VAL ASN PRO SER GLY VAL ARG VAL ALA SER PHE SEQRES 8 A 267 GLY VAL PRO THR GLU GLN GLU LEU ALA ARG ASP TYR LEU SEQRES 9 A 267 TRP ARG VAL HIS GLN GLN VAL PRO ARG LYS GLY GLU LEU SEQRES 10 A 267 VAL ILE PHE ASP ARG SER HIS TYR GLU ASP VAL LEU VAL SEQRES 11 A 267 VAL ARG VAL LYS ASN LEU VAL PRO GLN GLN VAL TRP GLN SEQRES 12 A 267 LYS ARG TYR ARG HIS ILE ARG GLU PHE GLU ARG MET LEU SEQRES 13 A 267 ALA ASP GLU GLY THR THR ILE LEU LYS PHE PHE LEU HIS SEQRES 14 A 267 ILE SER LYS ASP GLU GLN ARG GLN ARG LEU GLN GLU ARG SEQRES 15 A 267 LEU ASP ASN PRO GLU LYS ARG TRP LYS PHE ARG MET GLY SEQRES 16 A 267 ASP LEU GLU ASP ARG ARG LEU TRP ASP ARG TYR GLN GLU SEQRES 17 A 267 ALA TYR GLU ALA ALA ILE ARG GLU THR SER THR GLU TYR SEQRES 18 A 267 ALA PRO TRP TYR VAL ILE PRO ALA ASN LYS ASN TRP TYR SEQRES 19 A 267 ARG ASN TRP LEU VAL SER HIS ILE LEU VAL GLU THR LEU SEQRES 20 A 267 GLU GLY LEU ALA MET GLN TYR PRO GLN PRO GLU THR ALA SEQRES 21 A 267 SER GLU LYS ILE VAL ILE GLU SEQRES 1 B 267 MET LYS LYS TYR ARG VAL GLN PRO ASP GLY ARG PHE GLU SEQRES 2 B 267 LEU LYS ARG PHE ASP PRO ASP ASP THR SER ALA PHE GLU SEQRES 3 B 267 GLY GLY LYS GLN ALA ALA LEU GLU ALA LEU ALA VAL LEU SEQRES 4 B 267 ASN ARG ARG LEU GLU LYS LEU GLN GLU LEU LEU TYR ALA SEQRES 5 B 267 GLU GLY GLN HIS LYS VAL LEU VAL VAL LEU GLN ALA MET SEQRES 6 B 267 ASP ALA GLY GLY LYS ASP GLY THR ILE ARG VAL VAL PHE SEQRES 7 B 267 ASP GLY VAL ASN PRO SER GLY VAL ARG VAL ALA SER PHE SEQRES 8 B 267 GLY VAL PRO THR GLU GLN GLU LEU ALA ARG ASP TYR LEU SEQRES 9 B 267 TRP ARG VAL HIS GLN GLN VAL PRO ARG LYS GLY GLU LEU SEQRES 10 B 267 VAL ILE PHE ASP ARG SER HIS TYR GLU ASP VAL LEU VAL SEQRES 11 B 267 VAL ARG VAL LYS ASN LEU VAL PRO GLN GLN VAL TRP GLN SEQRES 12 B 267 LYS ARG TYR ARG HIS ILE ARG GLU PHE GLU ARG MET LEU SEQRES 13 B 267 ALA ASP GLU GLY THR THR ILE LEU LYS PHE PHE LEU HIS SEQRES 14 B 267 ILE SER LYS ASP GLU GLN ARG GLN ARG LEU GLN GLU ARG SEQRES 15 B 267 LEU ASP ASN PRO GLU LYS ARG TRP LYS PHE ARG MET GLY SEQRES 16 B 267 ASP LEU GLU ASP ARG ARG LEU TRP ASP ARG TYR GLN GLU SEQRES 17 B 267 ALA TYR GLU ALA ALA ILE ARG GLU THR SER THR GLU TYR SEQRES 18 B 267 ALA PRO TRP TYR VAL ILE PRO ALA ASN LYS ASN TRP TYR SEQRES 19 B 267 ARG ASN TRP LEU VAL SER HIS ILE LEU VAL GLU THR LEU SEQRES 20 B 267 GLU GLY LEU ALA MET GLN TYR PRO GLN PRO GLU THR ALA SEQRES 21 B 267 SER GLU LYS ILE VAL ILE GLU SEQRES 1 C 267 MET LYS LYS TYR ARG VAL GLN PRO ASP GLY ARG PHE GLU SEQRES 2 C 267 LEU LYS ARG PHE ASP PRO ASP ASP THR SER ALA PHE GLU SEQRES 3 C 267 GLY GLY LYS GLN ALA ALA LEU GLU ALA LEU ALA VAL LEU SEQRES 4 C 267 ASN ARG ARG LEU GLU LYS LEU GLN GLU LEU LEU TYR ALA SEQRES 5 C 267 GLU GLY GLN HIS LYS VAL LEU VAL VAL LEU GLN ALA MET SEQRES 6 C 267 ASP ALA GLY GLY LYS ASP GLY THR ILE ARG VAL VAL PHE SEQRES 7 C 267 ASP GLY VAL ASN PRO SER GLY VAL ARG VAL ALA SER PHE SEQRES 8 C 267 GLY VAL PRO THR GLU GLN GLU LEU ALA ARG ASP TYR LEU SEQRES 9 C 267 TRP ARG VAL HIS GLN GLN VAL PRO ARG LYS GLY GLU LEU SEQRES 10 C 267 VAL ILE PHE ASP ARG SER HIS TYR GLU ASP VAL LEU VAL SEQRES 11 C 267 VAL ARG VAL LYS ASN LEU VAL PRO GLN GLN VAL TRP GLN SEQRES 12 C 267 LYS ARG TYR ARG HIS ILE ARG GLU PHE GLU ARG MET LEU SEQRES 13 C 267 ALA ASP GLU GLY THR THR ILE LEU LYS PHE PHE LEU HIS SEQRES 14 C 267 ILE SER LYS ASP GLU GLN ARG GLN ARG LEU GLN GLU ARG SEQRES 15 C 267 LEU ASP ASN PRO GLU LYS ARG TRP LYS PHE ARG MET GLY SEQRES 16 C 267 ASP LEU GLU ASP ARG ARG LEU TRP ASP ARG TYR GLN GLU SEQRES 17 C 267 ALA TYR GLU ALA ALA ILE ARG GLU THR SER THR GLU TYR SEQRES 18 C 267 ALA PRO TRP TYR VAL ILE PRO ALA ASN LYS ASN TRP TYR SEQRES 19 C 267 ARG ASN TRP LEU VAL SER HIS ILE LEU VAL GLU THR LEU SEQRES 20 C 267 GLU GLY LEU ALA MET GLN TYR PRO GLN PRO GLU THR ALA SEQRES 21 C 267 SER GLU LYS ILE VAL ILE GLU SEQRES 1 D 267 MET LYS LYS TYR ARG VAL GLN PRO ASP GLY ARG PHE GLU SEQRES 2 D 267 LEU LYS ARG PHE ASP PRO ASP ASP THR SER ALA PHE GLU SEQRES 3 D 267 GLY GLY LYS GLN ALA ALA LEU GLU ALA LEU ALA VAL LEU SEQRES 4 D 267 ASN ARG ARG LEU GLU LYS LEU GLN GLU LEU LEU TYR ALA SEQRES 5 D 267 GLU GLY GLN HIS LYS VAL LEU VAL VAL LEU GLN ALA MET SEQRES 6 D 267 ASP ALA GLY GLY LYS ASP GLY THR ILE ARG VAL VAL PHE SEQRES 7 D 267 ASP GLY VAL ASN PRO SER GLY VAL ARG VAL ALA SER PHE SEQRES 8 D 267 GLY VAL PRO THR GLU GLN GLU LEU ALA ARG ASP TYR LEU SEQRES 9 D 267 TRP ARG VAL HIS GLN GLN VAL PRO ARG LYS GLY GLU LEU SEQRES 10 D 267 VAL ILE PHE ASP ARG SER HIS TYR GLU ASP VAL LEU VAL SEQRES 11 D 267 VAL ARG VAL LYS ASN LEU VAL PRO GLN GLN VAL TRP GLN SEQRES 12 D 267 LYS ARG TYR ARG HIS ILE ARG GLU PHE GLU ARG MET LEU SEQRES 13 D 267 ALA ASP GLU GLY THR THR ILE LEU LYS PHE PHE LEU HIS SEQRES 14 D 267 ILE SER LYS ASP GLU GLN ARG GLN ARG LEU GLN GLU ARG SEQRES 15 D 267 LEU ASP ASN PRO GLU LYS ARG TRP LYS PHE ARG MET GLY SEQRES 16 D 267 ASP LEU GLU ASP ARG ARG LEU TRP ASP ARG TYR GLN GLU SEQRES 17 D 267 ALA TYR GLU ALA ALA ILE ARG GLU THR SER THR GLU TYR SEQRES 18 D 267 ALA PRO TRP TYR VAL ILE PRO ALA ASN LYS ASN TRP TYR SEQRES 19 D 267 ARG ASN TRP LEU VAL SER HIS ILE LEU VAL GLU THR LEU SEQRES 20 D 267 GLU GLY LEU ALA MET GLN TYR PRO GLN PRO GLU THR ALA SEQRES 21 D 267 SER GLU LYS ILE VAL ILE GLU HET PO4 A 301 5 HET PO4 A 302 5 HET PO4 A 303 5 HET PO4 A 304 5 HET PO4 B 301 5 HET DPO B 302 9 HET DPO B 303 9 HET PO4 C 301 5 HET PO4 C 302 5 HET PO4 D 301 5 HET PO4 D 302 5 HET PO4 D 303 5 HETNAM PO4 PHOSPHATE ION HETNAM DPO DIPHOSPHATE FORMUL 5 PO4 10(O4 P 3-) FORMUL 10 DPO 2(O7 P2 4-) FORMUL 17 HOH *6(H2 O) HELIX 1 AA1 MET A 1 ARG A 5 5 5 HELIX 2 AA2 GLU A 13 PHE A 17 5 5 HELIX 3 AA3 GLY A 28 GLY A 54 1 27 HELIX 4 AA4 GLY A 69 PHE A 78 1 10 HELIX 5 AA5 THR A 95 ALA A 100 1 6 HELIX 6 AA6 TYR A 103 GLN A 110 1 8 HELIX 7 AA7 SER A 123 VAL A 128 5 6 HELIX 8 AA8 LEU A 129 LYS A 134 1 6 HELIX 9 AA9 PRO A 138 GLN A 143 1 6 HELIX 10 AB1 LYS A 144 GLU A 159 1 16 HELIX 11 AB2 SER A 171 ASP A 184 1 14 HELIX 12 AB3 LYS A 188 PHE A 192 5 5 HELIX 13 AB4 ARG A 193 MET A 194 5 2 HELIX 14 AB5 GLY A 195 LEU A 202 1 8 HELIX 15 AB6 LEU A 202 SER A 218 1 17 HELIX 16 AB7 LYS A 231 LEU A 250 1 20 HELIX 17 AB8 GLU B 13 PHE B 17 5 5 HELIX 18 AB9 GLY B 28 GLY B 54 1 27 HELIX 19 AC1 GLY B 69 PHE B 78 1 10 HELIX 20 AC2 ASN B 82 SER B 84 5 3 HELIX 21 AC3 THR B 95 ALA B 100 1 6 HELIX 22 AC4 TYR B 103 GLN B 110 1 8 HELIX 23 AC5 SER B 123 VAL B 128 5 6 HELIX 24 AC6 LEU B 129 LYS B 134 1 6 HELIX 25 AC7 PRO B 138 GLN B 143 1 6 HELIX 26 AC8 LYS B 144 GLU B 159 1 16 HELIX 27 AC9 SER B 171 ASP B 184 1 14 HELIX 28 AD1 ARG B 193 ASP B 196 5 4 HELIX 29 AD2 LEU B 197 LEU B 202 1 6 HELIX 30 AD3 LEU B 202 SER B 218 1 17 HELIX 31 AD4 LYS B 231 LEU B 250 1 20 HELIX 32 AD5 MET C 1 LYS C 3 5 3 HELIX 33 AD6 GLU C 13 PHE C 17 5 5 HELIX 34 AD7 GLY C 28 GLY C 54 1 27 HELIX 35 AD8 GLY C 69 PHE C 78 1 10 HELIX 36 AD9 THR C 95 ALA C 100 1 6 HELIX 37 AE1 TYR C 103 GLN C 110 1 8 HELIX 38 AE2 SER C 123 VAL C 128 5 6 HELIX 39 AE3 LEU C 129 LYS C 134 1 6 HELIX 40 AE4 PRO C 138 LYS C 144 1 7 HELIX 41 AE5 LYS C 144 GLU C 159 1 16 HELIX 42 AE6 SER C 171 ASP C 184 1 14 HELIX 43 AE7 LEU C 197 LEU C 202 1 6 HELIX 44 AE8 LEU C 202 SER C 218 1 17 HELIX 45 AE9 LYS C 231 LEU C 250 1 20 HELIX 46 AF1 GLU D 13 PHE D 17 5 5 HELIX 47 AF2 GLY D 28 GLY D 54 1 27 HELIX 48 AF3 GLY D 69 PHE D 78 1 10 HELIX 49 AF4 THR D 95 ALA D 100 1 6 HELIX 50 AF5 TYR D 103 GLN D 109 1 7 HELIX 51 AF6 SER D 123 VAL D 128 5 6 HELIX 52 AF7 LEU D 129 LYS D 134 1 6 HELIX 53 AF8 PRO D 138 GLN D 143 1 6 HELIX 54 AF9 LYS D 144 GLU D 159 1 16 HELIX 55 AG1 SER D 171 ASP D 184 1 14 HELIX 56 AG2 LYS D 188 PHE D 192 5 5 HELIX 57 AG3 ASP D 196 ARG D 201 1 6 HELIX 58 AG4 LEU D 202 SER D 218 1 17 HELIX 59 AG5 LYS D 231 LEU D 250 1 20 SHEET 1 AA1 5 VAL A 86 SER A 90 0 SHEET 2 AA1 5 GLU A 116 ASP A 121 1 O ILE A 119 N ALA A 89 SHEET 3 AA1 5 LYS A 57 ALA A 64 1 N VAL A 60 O PHE A 120 SHEET 4 AA1 5 THR A 161 HIS A 169 1 O THR A 162 N LYS A 57 SHEET 5 AA1 5 TRP A 224 PRO A 228 1 O ILE A 227 N HIS A 169 SHEET 1 AA2 5 VAL B 86 SER B 90 0 SHEET 2 AA2 5 GLU B 116 ASP B 121 1 O ILE B 119 N ALA B 89 SHEET 3 AA2 5 LYS B 57 ALA B 64 1 N VAL B 60 O PHE B 120 SHEET 4 AA2 5 THR B 161 HIS B 169 1 O THR B 162 N LYS B 57 SHEET 5 AA2 5 TRP B 224 PRO B 228 1 O ILE B 227 N HIS B 169 SHEET 1 AA3 6 ARG C 5 VAL C 6 0 SHEET 2 AA3 6 TRP C 224 PRO C 228 -1 O TRP C 224 N VAL C 6 SHEET 3 AA3 6 THR C 161 HIS C 169 1 N HIS C 169 O ILE C 227 SHEET 4 AA3 6 LYS C 57 ALA C 64 1 N LYS C 57 O THR C 162 SHEET 5 AA3 6 LEU C 117 ASP C 121 1 O PHE C 120 N VAL C 60 SHEET 6 AA3 6 VAL C 86 SER C 90 1 N ALA C 89 O ILE C 119 SHEET 1 AA4 6 ARG D 5 VAL D 6 0 SHEET 2 AA4 6 TRP D 224 PRO D 228 -1 O TRP D 224 N VAL D 6 SHEET 3 AA4 6 THR D 161 HIS D 169 1 N PHE D 167 O TYR D 225 SHEET 4 AA4 6 LYS D 57 ALA D 64 1 N LYS D 57 O THR D 162 SHEET 5 AA4 6 GLU D 116 ASP D 121 1 O PHE D 120 N VAL D 60 SHEET 6 AA4 6 VAL D 86 SER D 90 1 N ALA D 89 O ILE D 119 LINK CE LYS D 29 O1 PO4 D 302 1555 1555 1.37 SITE 1 AC1 6 ASP A 66 ALA A 67 GLY A 68 GLY A 69 SITE 2 AC1 6 LYS A 70 ASP A 71 SITE 1 AC2 4 TRP A 233 PO4 A 303 LYS B 231 DPO B 302 SITE 1 AC3 4 LYS A 231 ASN A 232 TRP A 233 PO4 A 302 SITE 1 AC4 3 ARG A 75 LYS A 188 LYS A 191 SITE 1 AC5 6 ASP B 66 ALA B 67 GLY B 68 GLY B 69 SITE 2 AC5 6 LYS B 70 ASP B 71 SITE 1 AC6 5 LYS A 231 PO4 A 302 LYS B 231 TRP B 233 SITE 2 AC6 5 DPO B 303 SITE 1 AC7 6 LYS B 29 ASN B 230 LYS B 231 ASN B 232 SITE 2 AC7 6 TRP B 233 DPO B 302 SITE 1 AC8 7 ASP C 66 ALA C 67 GLY C 68 GLY C 69 SITE 2 AC8 7 LYS C 70 ASP C 71 ARG C 182 SITE 1 AC9 3 LYS C 29 ASN C 232 TRP C 233 SITE 1 AD1 7 ALA D 67 GLY D 68 GLY D 69 LYS D 70 SITE 2 AD1 7 ASP D 71 ARG D 182 PO4 D 303 SITE 1 AD2 5 ARG D 75 ARG D 182 LYS D 188 LYS D 191 SITE 2 AD2 5 PO4 D 301 SITE 1 AD3 5 GLY D 28 GLN D 30 ALA D 31 LEU D 33 SITE 2 AD3 5 TRP D 233 CRYST1 166.552 166.552 94.836 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006004 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010545 0.00000