HEADER LIGASE 07-JUN-17 5O6T TITLE BIRC4 RING IN COMPLEX WITH DIMERIC UBIQUITIN VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE XIAP; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4,IAP-LIKE COMPND 5 PROTEIN,HILP,INHIBITOR OF APOPTOSIS PROTEIN 3,HIAP3,RING-TYPE E3 COMPND 6 UBIQUITIN TRANSFERASE XIAP,X-LINKED INHIBITOR OF APOPTOSIS PROTEIN,X- COMPND 7 LINKED IAP; COMPND 8 EC: 2.3.2.27; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: POLYUBIQUITIN-B; COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: A VARIANT OF UBIQUITIN IDENTIFIED FROM A PHAGE-DISPLAY COMPND 15 LIBRARY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: XIAP, API3, BIRC4, IAP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T.1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBB; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS E3 RING LIGASE, UBIQUITIN VARIANT, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GABRIELSEN,L.BUETOW,D.T.HUANG REVDAT 2 17-JAN-24 5O6T 1 REMARK REVDAT 1 01-NOV-17 5O6T 0 JRNL AUTH M.GABRIELSEN,L.BUETOW,M.A.NAKASONE,S.F.AHMED,G.J.SIBBET, JRNL AUTH 2 B.O.SMITH,W.ZHANG,S.S.SIDHU,D.T.HUANG JRNL TITL A GENERAL STRATEGY FOR DISCOVERY OF INHIBITORS AND JRNL TITL 2 ACTIVATORS OF RING AND U-BOX E3 LIGASES WITH UBIQUITIN JRNL TITL 3 VARIANTS. JRNL REF MOL. CELL V. 68 456 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 29053960 JRNL DOI 10.1016/J.MOLCEL.2017.09.027 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 39161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1950 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.35 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2734 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2020 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2606 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.68 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 128 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2205 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.28560 REMARK 3 B22 (A**2) : 1.89390 REMARK 3 B33 (A**2) : -3.17950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.170 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.076 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.076 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.088 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.073 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4741 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8653 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1104 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 71 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 670 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4741 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 330 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5386 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.34 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.06 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 43.3685 18.1291 131.4830 REMARK 3 T TENSOR REMARK 3 T11: -0.0372 T22: -0.0007 REMARK 3 T33: -0.0028 T12: -0.0136 REMARK 3 T13: 0.0049 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.9017 L22: 1.1052 REMARK 3 L33: 0.9425 L12: 0.0880 REMARK 3 L13: 0.0563 L23: 0.5769 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.0950 S13: 0.0744 REMARK 3 S21: -0.1181 S22: 0.0491 S23: -0.0792 REMARK 3 S31: -0.1426 S32: 0.0768 S33: -0.0067 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 28.3918 18.7913 131.2630 REMARK 3 T TENSOR REMARK 3 T11: -0.0352 T22: -0.0007 REMARK 3 T33: -0.0070 T12: -0.0022 REMARK 3 T13: -0.0086 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.6947 L22: 1.0310 REMARK 3 L33: 1.1972 L12: 0.1283 REMARK 3 L13: 0.2734 L23: -0.6729 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: 0.0631 S13: -0.0657 REMARK 3 S21: -0.1374 S22: 0.0332 S23: 0.0469 REMARK 3 S31: 0.1014 S32: -0.0666 S33: 0.0041 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 33.9463 29.0331 153.2130 REMARK 3 T TENSOR REMARK 3 T11: -0.0311 T22: -0.0407 REMARK 3 T33: -0.0383 T12: 0.0147 REMARK 3 T13: 0.0312 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.4276 L22: 6.0668 REMARK 3 L33: 0.6984 L12: -2.3742 REMARK 3 L13: 0.0047 L23: 0.0332 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: -0.1336 S13: -0.0356 REMARK 3 S21: 0.2844 S22: 0.1946 S23: 0.0706 REMARK 3 S31: -0.0471 S32: -0.0317 S33: -0.1297 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 36.2999 7.7328 153.3310 REMARK 3 T TENSOR REMARK 3 T11: -0.0161 T22: -0.0322 REMARK 3 T33: -0.0404 T12: 0.0089 REMARK 3 T13: -0.0270 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.6619 L22: 4.1116 REMARK 3 L33: 0.5930 L12: -0.8814 REMARK 3 L13: -0.0137 L23: -0.2826 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: -0.0175 S13: 0.0330 REMARK 3 S21: 0.2737 S22: 0.0330 S23: 0.0092 REMARK 3 S31: 0.0726 S32: -0.0084 S33: -0.0482 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39227 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 69.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.89000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EB5, 1UBQ REMARK 200 REMARK 200 REMARK: RECTANGULAR CUBOIDS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAHEPES PH 7.5, 1.4 M TRI-NA REMARK 280 CITRATE, PH 7.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.85750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.87350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.98600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.87350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.85750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.98600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 432 REMARK 465 SER A 433 REMARK 465 GLY B 432 REMARK 465 SER B 433 REMARK 465 GLU B 434 REMARK 465 GLY C -1 REMARK 465 ARG C 75 REMARK 465 VAL C 76 REMARK 465 ALA C 77 REMARK 465 SER C 78 REMARK 465 GLY D -1 REMARK 465 HIS D 74 REMARK 465 ARG D 75 REMARK 465 VAL D 76 REMARK 465 ALA D 77 REMARK 465 SER D 78 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS C 48 CD CE NZ REMARK 480 LYS D 64 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 455 -57.44 -130.23 REMARK 500 ALA A 459 -2.72 -143.42 REMARK 500 ASP B 455 -63.58 -135.41 REMARK 500 ALA B 459 -11.04 -141.13 REMARK 500 ALA B 459 -11.04 -146.25 REMARK 500 PHE C 73 -154.85 71.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 450 SG REMARK 620 2 CYS A 453 SG 107.9 REMARK 620 3 CYS A 471 SG 111.4 116.7 REMARK 620 4 CYS A 474 SG 110.7 111.1 98.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 465 SG REMARK 620 2 HIS A 467 ND1 111.1 REMARK 620 3 CYS A 481 SG 109.4 102.5 REMARK 620 4 CYS A 484 SG 107.5 113.8 112.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 450 SG REMARK 620 2 CYS B 453 SG 106.9 REMARK 620 3 CYS B 471 SG 111.8 115.6 REMARK 620 4 CYS B 474 SG 109.7 113.6 99.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 465 SG REMARK 620 2 HIS B 467 ND1 110.6 REMARK 620 3 CYS B 481 SG 109.5 104.4 REMARK 620 4 CYS B 484 SG 106.6 114.2 111.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 DBREF 5O6T A 434 497 UNP P98170 XIAP_HUMAN 434 497 DBREF 5O6T B 434 497 UNP P98170 XIAP_HUMAN 434 497 DBREF 5O6T C -1 74 UNP P0CG47 UBB_HUMAN 75 150 DBREF 5O6T D -1 74 UNP P0CG47 UBB_HUMAN 75 150 SEQADV 5O6T GLY A 432 UNP P98170 EXPRESSION TAG SEQADV 5O6T SER A 433 UNP P98170 EXPRESSION TAG SEQADV 5O6T GLY B 432 UNP P98170 EXPRESSION TAG SEQADV 5O6T SER B 433 UNP P98170 EXPRESSION TAG SEQADV 5O6T SER C 0 UNP P0CG47 GLY 76 CONFLICT SEQADV 5O6T LEU C 4 UNP P0CG47 PHE 80 CONFLICT SEQADV 5O6T THR C 6 UNP P0CG47 LYS 82 CONFLICT SEQADV 5O6T ILE C 8 UNP P0CG47 LEU 84 CONFLICT SEQADV 5O6T SER C 9 UNP P0CG47 THR 85 CONFLICT SEQADV 5O6T ALA C 10 UNP P0CG47 GLY 86 CONFLICT SEQADV 5O6T GLU C 11 UNP P0CG47 LYS 87 CONFLICT SEQADV 5O6T ARG C 14 UNP P0CG47 THR 90 CONFLICT SEQADV 5O6T PHE C 44 UNP P0CG47 ILE 120 CONFLICT SEQADV 5O6T GLU C 46 UNP P0CG47 ALA 122 CONFLICT SEQADV 5O6T ASN C 62 UNP P0CG47 GLN 138 CONFLICT SEQADV 5O6T LYS C 64 UNP P0CG47 GLU 140 CONFLICT SEQADV 5O6T LEU C 68 UNP P0CG47 HIS 144 CONFLICT SEQADV 5O6T VAL C 71 UNP P0CG47 LEU 147 CONFLICT SEQADV 5O6T LYS C 72 UNP P0CG47 ARG 148 CONFLICT SEQADV 5O6T PHE C 73 UNP P0CG47 LEU 149 CONFLICT SEQADV 5O6T HIS C 74 UNP P0CG47 ARG 150 CONFLICT SEQADV 5O6T ARG C 75 UNP P0CG47 EXPRESSION TAG SEQADV 5O6T VAL C 76 UNP P0CG47 EXPRESSION TAG SEQADV 5O6T ALA C 77 UNP P0CG47 EXPRESSION TAG SEQADV 5O6T SER C 78 UNP P0CG47 EXPRESSION TAG SEQADV 5O6T SER D 0 UNP P0CG47 GLY 76 CONFLICT SEQADV 5O6T LEU D 4 UNP P0CG47 PHE 80 CONFLICT SEQADV 5O6T THR D 6 UNP P0CG47 LYS 82 CONFLICT SEQADV 5O6T ILE D 8 UNP P0CG47 LEU 84 CONFLICT SEQADV 5O6T SER D 9 UNP P0CG47 THR 85 CONFLICT SEQADV 5O6T ALA D 10 UNP P0CG47 GLY 86 CONFLICT SEQADV 5O6T GLU D 11 UNP P0CG47 LYS 87 CONFLICT SEQADV 5O6T ARG D 14 UNP P0CG47 THR 90 CONFLICT SEQADV 5O6T PHE D 44 UNP P0CG47 ILE 120 CONFLICT SEQADV 5O6T GLU D 46 UNP P0CG47 ALA 122 CONFLICT SEQADV 5O6T ASN D 62 UNP P0CG47 GLN 138 CONFLICT SEQADV 5O6T LYS D 64 UNP P0CG47 GLU 140 CONFLICT SEQADV 5O6T LEU D 68 UNP P0CG47 HIS 144 CONFLICT SEQADV 5O6T VAL D 71 UNP P0CG47 LEU 147 CONFLICT SEQADV 5O6T LYS D 72 UNP P0CG47 ARG 148 CONFLICT SEQADV 5O6T PHE D 73 UNP P0CG47 LEU 149 CONFLICT SEQADV 5O6T HIS D 74 UNP P0CG47 ARG 150 CONFLICT SEQADV 5O6T ARG D 75 UNP P0CG47 EXPRESSION TAG SEQADV 5O6T VAL D 76 UNP P0CG47 EXPRESSION TAG SEQADV 5O6T ALA D 77 UNP P0CG47 EXPRESSION TAG SEQADV 5O6T SER D 78 UNP P0CG47 EXPRESSION TAG SEQRES 1 A 66 GLY SER GLU ILE SER THR GLU GLU GLN LEU ARG ARG LEU SEQRES 2 A 66 GLN GLU GLU LYS LEU CYS LYS ILE CYS MET ASP ARG ASN SEQRES 3 A 66 ILE ALA ILE VAL PHE VAL PRO CYS GLY HIS LEU VAL THR SEQRES 4 A 66 CYS LYS GLN CYS ALA GLU ALA VAL ASP LYS CYS PRO MET SEQRES 5 A 66 CYS TYR THR VAL ILE THR PHE LYS GLN LYS ILE PHE MET SEQRES 6 A 66 SER SEQRES 1 B 66 GLY SER GLU ILE SER THR GLU GLU GLN LEU ARG ARG LEU SEQRES 2 B 66 GLN GLU GLU LYS LEU CYS LYS ILE CYS MET ASP ARG ASN SEQRES 3 B 66 ILE ALA ILE VAL PHE VAL PRO CYS GLY HIS LEU VAL THR SEQRES 4 B 66 CYS LYS GLN CYS ALA GLU ALA VAL ASP LYS CYS PRO MET SEQRES 5 B 66 CYS TYR THR VAL ILE THR PHE LYS GLN LYS ILE PHE MET SEQRES 6 B 66 SER SEQRES 1 C 80 GLY SER MET GLN ILE LEU VAL THR THR ILE SER ALA GLU SEQRES 2 C 80 THR ILE ARG LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 C 80 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 C 80 PRO ASP GLN GLN ARG LEU PHE PHE GLU GLY LYS GLN LEU SEQRES 5 C 80 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE ASN LYS SEQRES 6 C 80 LYS SER THR LEU LEU LEU VAL VAL LYS PHE HIS ARG VAL SEQRES 7 C 80 ALA SER SEQRES 1 D 80 GLY SER MET GLN ILE LEU VAL THR THR ILE SER ALA GLU SEQRES 2 D 80 THR ILE ARG LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 D 80 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 D 80 PRO ASP GLN GLN ARG LEU PHE PHE GLU GLY LYS GLN LEU SEQRES 5 D 80 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE ASN LYS SEQRES 6 D 80 LYS SER THR LEU LEU LEU VAL VAL LYS PHE HIS ARG VAL SEQRES 7 D 80 ALA SER HET ZN A1001 1 HET ZN A1002 1 HET EDO A1003 10 HET ZN B 501 1 HET ZN B 502 1 HET EDO B 503 10 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 ZN 4(ZN 2+) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 11 HOH *218(H2 O) HELIX 1 AA1 SER A 436 LYS A 448 1 13 HELIX 2 AA2 CYS A 471 GLU A 476 1 6 HELIX 3 AA3 SER B 436 LYS B 448 1 13 HELIX 4 AA4 CYS B 471 GLU B 476 1 6 HELIX 5 AA5 THR C 22 GLY C 35 1 14 HELIX 6 AA6 PRO C 37 ASP C 39 5 3 HELIX 7 AA7 LEU C 56 ASN C 60 5 5 HELIX 8 AA8 THR D 22 GLY D 35 1 14 HELIX 9 AA9 PRO D 37 ASP D 39 5 3 HELIX 10 AB1 LEU D 56 ASN D 60 5 5 SHEET 1 AA1 2 ILE A 460 VAL A 463 0 SHEET 2 AA1 2 PHE A 490 LYS A 493 -1 O PHE A 490 N VAL A 463 SHEET 1 AA2 3 LEU B 468 THR B 470 0 SHEET 2 AA2 3 ILE B 460 VAL B 463 -1 N ILE B 460 O THR B 470 SHEET 3 AA2 3 PHE B 490 LYS B 493 -1 O PHE B 490 N VAL B 463 SHEET 1 AA3 5 ILE D 13 VAL D 17 0 SHEET 2 AA3 5 MET C 1 SER C 9 -1 N MET C 1 O VAL D 17 SHEET 3 AA3 5 THR D 66 VAL D 71 1 O LEU D 69 N THR C 6 SHEET 4 AA3 5 GLN D 41 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 AA3 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 SHEET 1 AA4 5 ILE C 13 VAL C 17 0 SHEET 2 AA4 5 MET D 1 SER D 9 -1 O MET D 1 N VAL C 17 SHEET 3 AA4 5 THR C 66 VAL C 71 1 N LEU C 69 O THR D 6 SHEET 4 AA4 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA4 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 LINK SG CYS A 450 ZN ZN A1001 1555 1555 2.35 LINK SG CYS A 453 ZN ZN A1001 1555 1555 2.31 LINK SG CYS A 465 ZN ZN A1002 1555 1555 2.31 LINK ND1 HIS A 467 ZN ZN A1002 1555 1555 1.98 LINK SG CYS A 471 ZN ZN A1001 1555 1555 2.36 LINK SG CYS A 474 ZN ZN A1001 1555 1555 2.35 LINK SG CYS A 481 ZN ZN A1002 1555 1555 2.33 LINK SG CYS A 484 ZN ZN A1002 1555 1555 2.34 LINK SG CYS B 450 ZN ZN B 501 1555 1555 2.34 LINK SG CYS B 453 ZN ZN B 501 1555 1555 2.29 LINK SG CYS B 465 ZN ZN B 502 1555 1555 2.34 LINK ND1 HIS B 467 ZN ZN B 502 1555 1555 2.01 LINK SG CYS B 471 ZN ZN B 501 1555 1555 2.34 LINK SG CYS B 474 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 481 ZN ZN B 502 1555 1555 2.35 LINK SG CYS B 484 ZN ZN B 502 1555 1555 2.34 CISPEP 1 VAL A 463 PRO A 464 0 16.60 CISPEP 2 VAL B 463 PRO B 464 0 16.17 SITE 1 AC1 4 CYS A 450 CYS A 453 CYS A 471 CYS A 474 SITE 1 AC2 4 CYS A 465 HIS A 467 CYS A 481 CYS A 484 SITE 1 AC3 4 PHE A 495 SER A 497 HOH A1128 ARG C 54 SITE 1 AC4 4 CYS B 450 CYS B 453 CYS B 471 CYS B 474 SITE 1 AC5 4 CYS B 465 HIS B 467 CYS B 481 CYS B 484 SITE 1 AC6 4 MET B 496 SER B 497 ARG D 54 ASP D 58 CRYST1 35.715 69.972 109.747 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009112 0.00000