HEADER MEMBRANE PROTEIN 08-JUN-17 5O77 TITLE KLEBSIELLA PNEUMONIAE OMPK35 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OMPK35; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: OMP8; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PBAD24 KEYWDS OUTER MEMBRANE PROTEIN, PORIN, ION TRANSPORT, OMPF ORTHOLOG, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.VAN DEN BERG,M.PATHANIA,M.ZAHN REVDAT 3 17-JAN-24 5O77 1 REMARK REVDAT 2 13-NOV-19 5O77 1 JRNL REVDAT 1 20-JUN-18 5O77 0 JRNL AUTH S.ACOSTA-GUTIERREZ,L.FERRARA,M.PATHANIA,M.MASI,J.WANG, JRNL AUTH 2 I.BODRENKO,M.ZAHN,M.WINTERHALTER,R.A.STAVENGER,J.M.PAGES, JRNL AUTH 3 J.H.NAISMITH,B.VAN DEN BERG,M.G.P.PAGE,M.CECCARELLI JRNL TITL GETTING DRUGS INTO GRAM-NEGATIVE BACTERIA: RATIONAL RULES JRNL TITL 2 FOR PERMEATION THROUGH GENERAL PORINS. JRNL REF ACS INFECT DIS. V. 4 1487 2018 JRNL REFN ESSN 2373-8227 JRNL PMID 29962203 JRNL DOI 10.1021/ACSINFECDIS.8B00108 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 59653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4415 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -1.08000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.456 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2756 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2406 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3728 ; 2.087 ; 1.921 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5510 ; 1.068 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 6.790 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;37.321 ;25.163 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;11.740 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.225 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.224 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3302 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 710 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1358 ; 0.812 ; 1.017 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1355 ; 0.812 ; 1.016 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1696 ; 1.268 ; 1.523 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1697 ; 1.268 ; 1.523 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1398 ; 1.674 ; 1.265 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1399 ; 1.673 ; 1.268 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2031 ; 2.528 ; 1.811 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3261 ; 5.591 ;10.365 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3262 ; 5.590 ;10.378 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): -28.3932 -22.2414 -7.2771 REMARK 3 T TENSOR REMARK 3 T11: 0.0017 T22: 0.0319 REMARK 3 T33: 0.0159 T12: 0.0039 REMARK 3 T13: 0.0048 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.7271 L22: 1.5891 REMARK 3 L33: 0.7463 L12: 0.2280 REMARK 3 L13: -0.0499 L23: -0.2740 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: -0.0141 S13: -0.0021 REMARK 3 S21: -0.0482 S22: -0.0625 S23: -0.1262 REMARK 3 S31: 0.0204 S32: 0.1369 S33: 0.0660 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8653 -20.6633 2.1139 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.1141 REMARK 3 T33: 0.0474 T12: -0.0033 REMARK 3 T13: -0.0159 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.6958 L22: 0.9486 REMARK 3 L33: 0.3115 L12: -0.0536 REMARK 3 L13: 0.1393 L23: -0.1324 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: -0.0381 S13: 0.0318 REMARK 3 S21: 0.0230 S22: 0.0144 S23: -0.1432 REMARK 3 S31: -0.0134 S32: 0.1577 S33: 0.0069 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 299 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2116 -37.2388 4.4508 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.1096 REMARK 3 T33: 0.0542 T12: 0.0294 REMARK 3 T13: -0.0067 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 0.9917 L22: 0.9326 REMARK 3 L33: 0.9783 L12: 0.3221 REMARK 3 L13: 0.5725 L23: 0.9100 REMARK 3 S TENSOR REMARK 3 S11: 0.0556 S12: -0.0253 S13: -0.0572 REMARK 3 S21: 0.1872 S22: 0.0597 S23: -0.1222 REMARK 3 S31: 0.1933 S32: 0.0893 S33: -0.1153 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GCP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 2000MME, 0.1 M CALCIUM REMARK 280 CHLORIDE, 0.1 M TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.02200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.02200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.02200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -77.31200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -38.65600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -66.95416 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C TRS A 402 LIES ON A SPECIAL POSITION. REMARK 375 N TRS A 402 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 TRS A 401 O15 C8E A 403 2.04 REMARK 500 O1 TRS A 401 C17 C8E A 403 2.12 REMARK 500 O HOH A 504 O HOH A 506 2.14 REMARK 500 O HOH A 582 O HOH A 708 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 28 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU A 58 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 282 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 327 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 -77.99 158.71 REMARK 500 ASP A 28 127.08 58.96 REMARK 500 TRP A 111 -139.71 -106.06 REMARK 500 TYR A 122 -124.02 55.46 REMARK 500 ASP A 137 40.46 -154.06 REMARK 500 ASP A 137 28.42 -148.58 REMARK 500 LYS A 287 105.43 -163.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E A 403 REMARK 610 C8E A 404 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 404 DBREF1 5O77 A 1 337 UNP A0A1P8FCM7_KLEPN DBREF2 5O77 A A0A1P8FCM7 22 358 SEQRES 1 A 337 ALA GLU ILE TYR ASN LYS ASN GLY ASN LYS LEU ASP PHE SEQRES 2 A 337 TYR GLY LYS MET VAL GLY GLU HIS VAL TRP THR THR ASN SEQRES 3 A 337 GLY ASP THR SER SER ASP ASP THR THR TYR ALA ARG ILE SEQRES 4 A 337 GLY LEU LYS GLY GLU THR GLN ILE ASN ASP GLN LEU ILE SEQRES 5 A 337 GLY TYR GLY GLN TRP GLU TYR ASN MET ASP ALA SER ASN SEQRES 6 A 337 VAL GLU GLY SER GLN THR THR LYS THR ARG LEU ALA PHE SEQRES 7 A 337 ALA GLY LEU LYS ALA GLY GLU TYR GLY SER PHE ASP TYR SEQRES 8 A 337 GLY ARG ASN TYR GLY ALA ILE TYR ASP VAL GLU ALA ALA SEQRES 9 A 337 THR ASP MET LEU VAL GLU TRP GLY GLY ASP GLY TRP ASN SEQRES 10 A 337 TYR THR ASP ASN TYR MET THR GLY ARG THR ASN GLY VAL SEQRES 11 A 337 ALA THR TYR ARG ASN SER ASP PHE PHE GLY LEU VAL ASP SEQRES 12 A 337 GLY LEU SER PHE ALA LEU GLN TYR GLN GLY LYS ASN ASP SEQRES 13 A 337 HIS ASP ARG ALA ILE ARG LYS GLN ASN GLY ASP GLY PHE SEQRES 14 A 337 SER THR ALA ALA THR TYR ALA PHE ASP ASN GLY ILE ALA SEQRES 15 A 337 LEU SER ALA GLY TYR SER SER SER ASN ARG SER VAL ASP SEQRES 16 A 337 GLN LYS ALA ASP GLY ASN GLY ASP LYS ALA GLU ALA TRP SEQRES 17 A 337 ALA THR SER ALA LYS TYR ASP ALA ASN ASN ILE TYR ALA SEQRES 18 A 337 ALA VAL MET TYR SER GLN THR TYR ASN MET THR PRO GLU SEQRES 19 A 337 GLU ASP ASN HIS PHE ALA GLY LYS THR GLN ASN PHE GLU SEQRES 20 A 337 ALA VAL VAL GLN TYR GLN PHE ASP PHE GLY LEU ARG PRO SEQRES 21 A 337 SER ILE GLY TYR VAL GLN THR LYS GLY LYS ASP LEU GLN SEQRES 22 A 337 SER ARG ALA GLY PHE SER GLY GLY ASP ALA ASP LEU VAL SEQRES 23 A 337 LYS TYR ILE GLU VAL GLY THR TRP TYR TYR PHE ASN LYS SEQRES 24 A 337 ASN MET ASN VAL TYR ALA ALA TYR LYS PHE ASN GLN LEU SEQRES 25 A 337 ASP ASP ASN ASP TYR THR LYS ALA ALA GLY VAL ALA THR SEQRES 26 A 337 ASP ASP GLN ALA ALA VAL GLY ILE VAL TYR GLN PHE HET TRS A 401 8 HET TRS A 402 8 HET C8E A 403 8 HET C8E A 404 15 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE HETSYN TRS TRIS BUFFER FORMUL 2 TRS 2(C4 H12 N O3 1+) FORMUL 4 C8E 2(C16 H34 O5) FORMUL 6 HOH *284(H2 O) HELIX 1 AA1 GLY A 84 TYR A 86 5 3 HELIX 2 AA2 ILE A 98 ALA A 103 1 6 HELIX 3 AA3 ALA A 160 GLN A 164 5 5 HELIX 4 AA4 SER A 193 ALA A 198 1 6 HELIX 5 AA5 ASN A 315 GLY A 322 1 8 SHEET 1 AA119 GLU A 2 LYS A 6 0 SHEET 2 AA119 SER A 30 ASP A 33 0 SHEET 3 AA119 TYR A 36 GLN A 46 0 SHEET 4 AA119 ILE A 52 ASP A 62 -1 O TYR A 59 N ILE A 39 SHEET 5 AA119 THR A 72 LYS A 82 -1 O LYS A 73 N ASN A 60 SHEET 6 AA119 SER A 88 TYR A 95 -1 O ARG A 93 N ALA A 77 SHEET 7 AA119 ARG A 126 ASN A 135 -1 O THR A 132 N ASP A 90 SHEET 8 AA119 LEU A 145 GLN A 152 -1 O LEU A 149 N TYR A 133 SHEET 9 AA119 GLY A 168 ALA A 176 -1 O SER A 170 N GLN A 150 SHEET 10 AA119 ILE A 181 ASN A 191 -1 O LEU A 183 N TYR A 175 SHEET 11 AA119 LYS A 204 ALA A 216 -1 O ALA A 205 N SER A 190 SHEET 12 AA119 ILE A 219 TYR A 229 -1 O ALA A 221 N TYR A 214 SHEET 13 AA119 LYS A 242 TYR A 252 -1 O ASN A 245 N SER A 226 SHEET 14 AA119 LEU A 258 LEU A 272 -1 O LYS A 268 N GLN A 244 SHEET 15 AA119 GLY A 281 ASN A 298 -1 O ALA A 283 N GLY A 269 SHEET 16 AA119 MET A 301 ASN A 310 -1 O PHE A 309 N ILE A 289 SHEET 17 AA119 ASP A 327 PHE A 337 -1 O VAL A 334 N ASN A 302 SHEET 18 AA119 ASN A 9 THR A 25 -1 N TRP A 23 O ALA A 329 SHEET 19 AA119 SER A 30 ASP A 33 -1 O SER A 30 N THR A 24 SITE 1 AC1 8 ASP A 114 THR A 119 ARG A 126 C8E A 403 SITE 2 AC1 8 HOH A 508 HOH A 540 HOH A 552 HOH A 593 SITE 1 AC2 4 GLU A 2 ILE A 3 HOH A 557 HOH A 610 SITE 1 AC3 8 LYS A 73 ARG A 75 ARG A 126 TRS A 401 SITE 2 AC3 8 HOH A 512 HOH A 626 HOH A 702 HOH A 724 SITE 1 AC4 5 GLU A 44 TYR A 54 LYS A 82 SER A 88 SITE 2 AC4 5 SER A 136 CRYST1 77.312 77.312 114.044 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012935 0.007468 0.000000 0.00000 SCALE2 0.000000 0.014936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008769 0.00000