HEADER LYASE 13-JUN-17 5O8E TITLE MUTANT OF CLASS II CPD PHOTOLYASE FROM METHANOSARCINA MAZEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBODIPYRIMIDINE PHOTOLYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.99.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI GO1; SOURCE 3 ORGANISM_TAXID: 192952; SOURCE 4 GENE: MM_0852; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOTOREDUCTION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.IGNATZ,Y.GEISSELBRECHT,L.-O.ESSEN REVDAT 6 08-MAY-24 5O8E 1 REMARK REVDAT 5 16-OCT-19 5O8E 1 REMARK REVDAT 4 24-JAN-18 5O8E 1 JRNL REVDAT 3 22-NOV-17 5O8E 1 JRNL REVDAT 2 08-NOV-17 5O8E 1 JRNL REVDAT 1 13-SEP-17 5O8E 0 JRNL AUTH E.IGNATZ,Y.GEISSELBRECHT,S.KIONTKE,L.O.ESSEN JRNL TITL NICOTINAMIDE ADENINE DINUCLEOTIDES ARREST PHOTOREDUCTION OF JRNL TITL 2 CLASS II DNA PHOTOLYASES IN FADH ̇ STATE. JRNL REF PHOTOCHEM. PHOTOBIOL. V. 94 81 2018 JRNL REFN ISSN 1751-1097 JRNL PMID 28858395 JRNL DOI 10.1111/PHP.12834 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 67476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.480 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1908 - 3.2516 1.00 10037 136 0.1516 0.1929 REMARK 3 2 3.2516 - 2.5810 1.00 9567 148 0.1544 0.1861 REMARK 3 3 2.5810 - 2.2547 1.00 9473 139 0.1456 0.1770 REMARK 3 4 2.2547 - 2.0486 1.00 9411 139 0.1495 0.2151 REMARK 3 5 2.0486 - 1.9018 1.00 9359 150 0.1591 0.1654 REMARK 3 6 1.9018 - 1.7896 1.00 9324 142 0.1792 0.2022 REMARK 3 7 1.7896 - 1.7000 1.00 9305 146 0.1971 0.2331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3950 REMARK 3 ANGLE : 1.001 5382 REMARK 3 CHIRALITY : 0.054 554 REMARK 3 PLANARITY : 0.007 680 REMARK 3 DIHEDRAL : 15.662 2351 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 18.9901 25.0036 105.3759 REMARK 3 T TENSOR REMARK 3 T11: 0.0665 T22: 0.1155 REMARK 3 T33: 0.0937 T12: -0.0060 REMARK 3 T13: -0.0032 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.7112 L22: 0.5578 REMARK 3 L33: 1.6345 L12: 0.0212 REMARK 3 L13: 0.1091 L23: -0.1360 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.0841 S13: 0.0008 REMARK 3 S21: -0.0403 S22: -0.0086 S23: 0.0171 REMARK 3 S31: -0.0589 S32: -0.0513 S33: 0.0089 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67494 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M LITHIUM SULFATE, 7.5% (W/V) PEG REMARK 280 6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.20000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.86000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 183.30000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.86000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.10000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.86000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.86000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 183.30000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.86000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.86000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.10000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 122.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLU A 189 REMARK 465 LEU A 190 REMARK 465 SER A 191 REMARK 465 ALA A 192 REMARK 465 GLY A 193 REMARK 465 ALA A 194 REMARK 465 GLY A 195 REMARK 465 MET A 196 REMARK 465 VAL A 197 REMARK 465 ALA A 463 REMARK 465 LEU A 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CE NZ REMARK 470 THR A 187 OG1 CG2 REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 ASN A 220 CG REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 LYS A 354 CE NZ REMARK 470 LYS A 394 CE NZ REMARK 470 LYS A 455 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 SO4 A 511 O HOH A 601 1.89 REMARK 500 O HOH A 1014 O HOH A 1039 1.94 REMARK 500 O HOH A 1030 O HOH A 1061 2.05 REMARK 500 O HOH A 1102 O HOH A 1110 2.09 REMARK 500 O HOH A 980 O HOH A 989 2.14 REMARK 500 O HOH A 1069 O HOH A 1110 2.15 REMARK 500 N MET A 3 O HOH A 602 2.17 REMARK 500 O HOH A 822 O HOH A 904 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -58.50 -141.55 REMARK 500 ASP A 28 79.53 -118.32 REMARK 500 ALA A 64 -149.16 -121.20 REMARK 500 ASN A 220 -35.93 -36.30 REMARK 500 LYS A 221 -3.22 85.35 REMARK 500 LEU A 303 -66.22 -95.97 REMARK 500 VAL A 436 -61.60 68.00 REMARK 500 TYR A 461 50.36 -113.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1113 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1114 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1115 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1116 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1117 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1118 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A1120 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A1121 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A1122 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A1123 DISTANCE = 7.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 511 DBREF 5O8E A 1 464 UNP Q8PYK9 Q8PYK9_METMA 1 464 SEQADV 5O8E MET A -19 UNP Q8PYK9 INITIATING METHIONINE SEQADV 5O8E GLY A -18 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E SER A -17 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E SER A -16 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E HIS A -15 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E HIS A -14 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E HIS A -13 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E HIS A -12 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E HIS A -11 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E HIS A -10 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E SER A -9 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E SER A -8 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E GLY A -7 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E LEU A -6 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E VAL A -5 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E PRO A -4 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E ARG A -3 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E GLY A -2 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E SER A -1 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E HIS A 0 UNP Q8PYK9 EXPRESSION TAG SEQADV 5O8E PHE A 360 UNP Q8PYK9 TRP 360 ENGINEERED MUTATION SEQADV 5O8E THR A 377 UNP Q8PYK9 MET 377 ENGINEERED MUTATION SEQRES 1 A 484 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 484 LEU VAL PRO ARG GLY SER HIS MET ILE MET ASN PRO LYS SEQRES 3 A 484 ARG ILE ARG ALA LEU LYS SER GLY LYS GLN GLY ASP GLY SEQRES 4 A 484 PRO VAL VAL TYR TRP MET SER ARG ASP GLN ARG ALA GLU SEQRES 5 A 484 ASP ASN TRP ALA LEU LEU PHE SER ARG ALA ILE ALA LYS SEQRES 6 A 484 GLU ALA ASN VAL PRO VAL VAL VAL VAL PHE CYS LEU THR SEQRES 7 A 484 ASP GLU PHE LEU GLU ALA GLY ILE ARG GLN TYR GLU PHE SEQRES 8 A 484 MET LEU LYS GLY LEU GLN GLU LEU GLU VAL SER LEU SER SEQRES 9 A 484 ARG LYS LYS ILE PRO SER PHE PHE LEU ARG GLY ASP PRO SEQRES 10 A 484 GLY GLU LYS ILE SER ARG PHE VAL LYS ASP TYR ASN ALA SEQRES 11 A 484 GLY THR LEU VAL THR ASP PHE SER PRO LEU ARG ILE LYS SEQRES 12 A 484 ASN GLN TRP ILE GLU LYS VAL ILE SER GLY ILE SER ILE SEQRES 13 A 484 PRO PHE PHE GLU VAL ASP ALA HIS ASN VAL VAL PRO CYS SEQRES 14 A 484 TRP GLU ALA SER GLN LYS HIS GLU TYR ALA ALA HIS THR SEQRES 15 A 484 PHE ARG PRO LYS LEU TYR ALA LEU LEU PRO GLU PHE LEU SEQRES 16 A 484 GLU GLU PHE PRO GLU LEU GLU PRO ASN SER VAL THR PRO SEQRES 17 A 484 GLU LEU SER ALA GLY ALA GLY MET VAL GLU THR LEU SER SEQRES 18 A 484 ASP VAL LEU GLU THR GLY VAL LYS ALA LEU LEU PRO GLU SEQRES 19 A 484 ARG ALA LEU LEU LYS ASN LYS ASP PRO LEU PHE GLU PRO SEQRES 20 A 484 TRP HIS PHE GLU PRO GLY GLU LYS ALA ALA LYS LYS VAL SEQRES 21 A 484 MET GLU SER PHE ILE ALA ASP ARG LEU ASP SER TYR GLY SEQRES 22 A 484 ALA LEU ARG ASN ASP PRO THR LYS ASN MET LEU SER ASN SEQRES 23 A 484 LEU SER PRO TYR LEU HIS PHE GLY GLN ILE SER SER GLN SEQRES 24 A 484 ARG VAL VAL LEU GLU VAL GLU LYS ALA GLU SER ASN PRO SEQRES 25 A 484 GLY SER LYS LYS ALA PHE LEU ASP GLU ILE LEU ILE TRP SEQRES 26 A 484 LYS GLU ILE SER ASP ASN PHE CYS TYR TYR ASN PRO GLY SEQRES 27 A 484 TYR ASP GLY PHE GLU SER PHE PRO SER TRP ALA LYS GLU SEQRES 28 A 484 SER LEU ASN ALA HIS ARG ASN ASP VAL ARG SER HIS ILE SEQRES 29 A 484 TYR THR LEU GLU GLU PHE GLU ALA GLY LYS THR HIS ASP SEQRES 30 A 484 PRO LEU PHE ASN ALA SER GLN MET GLU LEU LEU SER THR SEQRES 31 A 484 GLY LYS MET HIS GLY TYR THR ARG MET TYR TRP ALA LYS SEQRES 32 A 484 LYS ILE LEU GLU TRP SER GLU SER PRO GLU LYS ALA LEU SEQRES 33 A 484 GLU ILE ALA ILE CYS LEU ASN ASP ARG TYR GLU LEU ASP SEQRES 34 A 484 GLY ARG ASP PRO ASN GLY TYR ALA GLY ILE ALA TRP SER SEQRES 35 A 484 ILE GLY GLY VAL HIS ASP ARG ALA TRP GLY GLU ARG GLU SEQRES 36 A 484 VAL THR GLY LYS ILE ARG TYR MET SER TYR GLU GLY CYS SEQRES 37 A 484 LYS ARG LYS PHE ASP VAL LYS LEU TYR ILE GLU LYS TYR SEQRES 38 A 484 SER ALA LEU HET FAD A 501 83 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET GOL A 509 14 HET GOL A 510 14 HET SO4 A 511 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 SO4 8(O4 S 2-) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 13 HOH *523(H2 O) HELIX 1 AA1 ASN A 4 LYS A 6 5 3 HELIX 2 AA2 ASN A 34 ASN A 48 1 15 HELIX 3 AA3 THR A 58 ALA A 64 5 7 HELIX 4 AA4 GLY A 65 LYS A 86 1 22 HELIX 5 AA5 ASP A 96 TYR A 108 1 13 HELIX 6 AA6 LEU A 120 ILE A 134 1 15 HELIX 7 AA7 PRO A 148 SER A 153 1 6 HELIX 8 AA8 ALA A 159 LEU A 175 1 17 HELIX 9 AA9 THR A 199 LEU A 212 1 14 HELIX 10 AB1 PRO A 213 ARG A 215 5 3 HELIX 11 AB2 GLY A 233 ARG A 248 1 16 HELIX 12 AB3 ARG A 248 ARG A 256 1 9 HELIX 13 AB4 LEU A 267 PHE A 273 1 7 HELIX 14 AB5 SER A 277 ALA A 288 1 12 HELIX 15 AB6 ASN A 291 LEU A 303 1 13 HELIX 16 AB7 LEU A 303 ASN A 316 1 14 HELIX 17 AB8 GLY A 321 PHE A 325 5 5 HELIX 18 AB9 PRO A 326 HIS A 336 1 11 HELIX 19 AC1 THR A 346 ALA A 352 1 7 HELIX 20 AC2 ASP A 357 GLY A 371 1 15 HELIX 21 AC3 HIS A 374 TRP A 388 1 15 HELIX 22 AC4 SER A 391 GLU A 407 1 17 HELIX 23 AC5 ASP A 412 GLY A 425 1 14 HELIX 24 AC6 SER A 444 PHE A 452 1 9 HELIX 25 AC7 ASP A 453 TYR A 461 1 9 SHEET 1 AA1 6 ILE A 8 LYS A 12 0 SHEET 2 AA1 6 PHE A 138 VAL A 141 -1 O PHE A 138 N LEU A 11 SHEET 3 AA1 6 THR A 112 ASP A 116 1 N LEU A 113 O PHE A 139 SHEET 4 AA1 6 VAL A 21 TRP A 24 1 N TRP A 24 O VAL A 114 SHEET 5 AA1 6 VAL A 51 LEU A 57 1 O VAL A 52 N TYR A 23 SHEET 6 AA1 6 SER A 90 ARG A 94 1 O LEU A 93 N LEU A 57 SITE 1 AC1 32 TYR A 252 LEU A 264 SER A 265 ASN A 266 SITE 2 AC1 32 LEU A 267 SER A 268 LEU A 271 PHE A 298 SITE 3 AC1 32 GLU A 301 ILE A 302 TRP A 305 LYS A 306 SITE 4 AC1 32 SER A 309 LYS A 372 GLY A 375 ARG A 378 SITE 5 AC1 32 MET A 379 ALA A 382 ASN A 403 ASP A 409 SITE 6 AC1 32 GLY A 410 ASN A 414 GLY A 415 SER A 422 SITE 7 AC1 32 GOL A 510 HOH A 634 HOH A 733 HOH A 777 SITE 8 AC1 32 HOH A 838 HOH A 854 HOH A 873 HOH A 946 SITE 1 AC2 7 ALA A 160 HIS A 161 ARG A 164 HOH A 610 SITE 2 AC2 7 HOH A 667 HOH A 682 HOH A 876 SITE 1 AC3 9 ILE A 66 ARG A 67 ARG A 215 ALA A 216 SITE 2 AC3 9 PHE A 225 ARG A 405 HOH A 627 HOH A 689 SITE 3 AC3 9 HOH A 747 SITE 1 AC4 10 LYS A 129 HIS A 156 TYR A 158 PRO A 326 SITE 2 AC4 10 HOH A 616 HOH A 625 HOH A 657 HOH A 761 SITE 3 AC4 10 HOH A 824 HOH A 844 SITE 1 AC5 6 GLN A 77 GLU A 80 THR A 199 LEU A 200 SITE 2 AC5 6 SER A 201 HOH A 665 SITE 1 AC6 6 SER A 153 GLN A 154 LYS A 166 HOH A 654 SITE 2 AC6 6 HOH A 723 HOH A 874 SITE 1 AC7 4 LYS A 87 VAL A 186 THR A 187 LYS A 449 SITE 1 AC8 4 ARG A 434 SER A 444 GLU A 446 ARG A 450 SITE 1 AC9 5 TYR A 319 ASP A 320 TYR A 416 HOH A 756 SITE 2 AC9 5 HOH A 898 SITE 1 AD1 8 TRP A 305 MET A 379 GLY A 418 TRP A 421 SITE 2 AD1 8 FAD A 501 HOH A 634 HOH A 642 HOH A 802 SITE 1 AD2 6 SER A 26 SER A 118 HOH A 601 HOH A 739 SITE 2 AD2 6 HOH A 740 HOH A 846 CRYST1 69.720 69.720 244.400 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004092 0.00000