HEADER HYDROLASE 13-JUN-17 5O8I TITLE CRYSTAL STRUCTURE OF HUMAN HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN TITLE 2 1 (HHINT1) CRYSTALLIZED AT P212121 SPACE GROUP, AND REFINED TO 1.27 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADENOSINE 5'-MONOPHOSPHORAMIDASE,PROTEIN KINASE C INHIBITOR COMPND 5 1,PROTEIN KINASE C-INTERACTING PROTEIN 1,PKCI-1; COMPND 6 EC: 3.-.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: FIRST ELEVEN AMINO ACID RESIDUES ARE NOT VISIBLE ON COMPND 9 ELECTRON DENSITY MAPS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HINT1, HINT, PKCI1, PRKCNH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSGA02 KEYWDS PHOSPHORAMIDASE, DESULFURASE, TUMOUR SUPPRESSOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.M.DOLOT,A.SEDA,B.C.NAWROT REVDAT 2 17-JAN-24 5O8I 1 REMARK REVDAT 1 28-JUN-17 5O8I 0 JRNL AUTH R.M.DOLOT,A.SEDA,B.C.NAWROT JRNL TITL DIFFERENCES IN CRYSTAL PACKING AS THE KEY FACTOR FOR JRNL TITL 2 STABILIZATION OF THE N-TERMINAL FRAGMENT OF HHINT1 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 70907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.102 REMARK 3 R VALUE (WORKING SET) : 0.100 REMARK 3 FREE R VALUE : 0.133 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5012 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 299 REMARK 3 BIN FREE R VALUE : 0.2110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1789 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.021 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.113 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.987 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2111 ; 0.030 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1935 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2898 ; 2.652 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4537 ; 1.308 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 6.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;36.464 ;23.977 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 365 ;13.584 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.163 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2478 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 424 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1062 ; 1.836 ; 1.172 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1061 ; 1.836 ; 1.172 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1373 ; 2.473 ; 1.765 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1374 ; 2.473 ; 1.765 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1049 ; 3.851 ; 1.584 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1050 ; 3.850 ; 1.585 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1526 ; 4.457 ; 2.245 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2539 ; 4.812 ;17.971 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2540 ; 4.811 ;17.972 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4046 ; 7.016 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 214 ;30.653 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4169 ;11.757 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 12 125 B 12 125 7416 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : SI(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74711 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.270 REMARK 200 RESOLUTION RANGE LOW (A) : 40.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.4.06 REMARK 200 STARTING MODEL: 3TW2 REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 8.5, 0.2 M SODIUM/POTASSIUM PHOSPHATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.01550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.43200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.18200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.43200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.01550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.18200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 ILE A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 GLN A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 ILE B 5 REMARK 465 ALA B 6 REMARK 465 LYS B 7 REMARK 465 ALA B 8 REMARK 465 GLN B 9 REMARK 465 VAL B 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 329 O HOH B 380 1.83 REMARK 500 O HOH A 399 O HOH A 410 1.87 REMARK 500 O HOH B 431 O HOH B 455 1.93 REMARK 500 O HOH A 218 O HOH A 279 1.96 REMARK 500 O HOH A 352 O HOH A 389 1.99 REMARK 500 ND2 ASN A 91 O HOH A 201 2.00 REMARK 500 OD1 ASN A 91 O HOH A 202 2.00 REMARK 500 O HOH A 373 O HOH A 412 2.04 REMARK 500 O HOH A 352 O HOH A 410 2.05 REMARK 500 O LEU A 90 O HOH A 203 2.08 REMARK 500 O HOH A 253 O HOH A 375 2.10 REMARK 500 CD2 HIS B 59 O HOH B 302 2.11 REMARK 500 O HOH A 232 O HOH A 352 2.13 REMARK 500 NH2 ARG A 12 O HOH A 204 2.15 REMARK 500 OG SER A 107 O HOH A 205 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 422 O HOH B 471 2454 1.93 REMARK 500 ND2 ASN A 91 O HOH B 332 2454 2.12 REMARK 500 O HOH A 287 O HOH B 434 4545 2.16 REMARK 500 O HOH A 438 O HOH B 427 4545 2.16 REMARK 500 OD1 ASP B 36 O HOH A 427 2455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 45 CB SER A 45 OG 0.097 REMARK 500 HIS A 59 NE2 HIS A 59 CD2 -0.071 REMARK 500 GLU A 71 CD GLU A 71 OE2 0.144 REMARK 500 SER A 72 CB SER A 72 OG -0.224 REMARK 500 LYS A 82 CB LYS A 82 CG -0.323 REMARK 500 LYS A 82 CE LYS A 82 NZ 0.193 REMARK 500 ASP A 87 CB ASP A 87 CG 0.128 REMARK 500 ARG B 37 NE ARG B 37 CZ 0.093 REMARK 500 ARG B 37 CZ ARG B 37 NH1 0.100 REMARK 500 GLU B 71 CB GLU B 71 CG -0.312 REMARK 500 MET B 78 CG MET B 78 SD 0.172 REMARK 500 ASN B 91 CG ASN B 91 ND2 -0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 15 CA - C - O ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET A 78 CG - SD - CE ANGL. DEV. = -14.2 DEGREES REMARK 500 TYR A 109 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 24 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LYS B 25 CD - CE - NZ ANGL. DEV. = 13.9 DEGREES REMARK 500 ASP B 36 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP B 36 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 37 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ILE B 63 CB - CG1 - CD1 ANGL. DEV. = -17.7 DEGREES REMARK 500 GLU B 71 OE1 - CD - OE2 ANGL. DEV. = 8.2 DEGREES REMARK 500 MET B 78 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG B 119 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 119 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 16 -23.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 428 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 429 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 430 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 431 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 432 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 433 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 434 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 435 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A 436 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A 437 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH A 438 DISTANCE = 8.39 ANGSTROMS REMARK 525 HOH A 439 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH A 440 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH A 441 DISTANCE = 9.55 ANGSTROMS REMARK 525 HOH B 472 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 473 DISTANCE = 6.79 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KPB RELATED DB: PDB REMARK 900 1KPB CONTAINS THE SAME PROTEIN REFINED TO LOWER RESOLUTION (2.0 A) DBREF 5O8I A 1 126 UNP P49773 HINT1_HUMAN 1 126 DBREF 5O8I B 1 126 UNP P49773 HINT1_HUMAN 1 126 SEQRES 1 A 126 MET ALA ASP GLU ILE ALA LYS ALA GLN VAL ALA ARG PRO SEQRES 2 A 126 GLY GLY ASP THR ILE PHE GLY LYS ILE ILE ARG LYS GLU SEQRES 3 A 126 ILE PRO ALA LYS ILE ILE PHE GLU ASP ASP ARG CYS LEU SEQRES 4 A 126 ALA PHE HIS ASP ILE SER PRO GLN ALA PRO THR HIS PHE SEQRES 5 A 126 LEU VAL ILE PRO LYS LYS HIS ILE SER GLN ILE SER VAL SEQRES 6 A 126 ALA GLU ASP ASP ASP GLU SER LEU LEU GLY HIS LEU MET SEQRES 7 A 126 ILE VAL GLY LYS LYS CYS ALA ALA ASP LEU GLY LEU ASN SEQRES 8 A 126 LYS GLY TYR ARG MET VAL VAL ASN GLU GLY SER ASP GLY SEQRES 9 A 126 GLY GLN SER VAL TYR HIS VAL HIS LEU HIS VAL LEU GLY SEQRES 10 A 126 GLY ARG GLN MET HIS TRP PRO PRO GLY SEQRES 1 B 126 MET ALA ASP GLU ILE ALA LYS ALA GLN VAL ALA ARG PRO SEQRES 2 B 126 GLY GLY ASP THR ILE PHE GLY LYS ILE ILE ARG LYS GLU SEQRES 3 B 126 ILE PRO ALA LYS ILE ILE PHE GLU ASP ASP ARG CYS LEU SEQRES 4 B 126 ALA PHE HIS ASP ILE SER PRO GLN ALA PRO THR HIS PHE SEQRES 5 B 126 LEU VAL ILE PRO LYS LYS HIS ILE SER GLN ILE SER VAL SEQRES 6 B 126 ALA GLU ASP ASP ASP GLU SER LEU LEU GLY HIS LEU MET SEQRES 7 B 126 ILE VAL GLY LYS LYS CYS ALA ALA ASP LEU GLY LEU ASN SEQRES 8 B 126 LYS GLY TYR ARG MET VAL VAL ASN GLU GLY SER ASP GLY SEQRES 9 B 126 GLY GLN SER VAL TYR HIS VAL HIS LEU HIS VAL LEU GLY SEQRES 10 B 126 GLY ARG GLN MET HIS TRP PRO PRO GLY HET ADP B 201 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *414(H2 O) HELIX 1 AA1 THR A 17 ARG A 24 1 8 HELIX 2 AA2 GLN A 62 ALA A 66 5 5 HELIX 3 AA3 GLU A 67 ASP A 69 5 3 HELIX 4 AA4 ASP A 70 LEU A 88 1 19 HELIX 5 AA5 GLY A 101 GLY A 105 1 5 HELIX 6 AA6 THR B 17 ARG B 24 1 8 HELIX 7 AA7 GLN B 62 ALA B 66 5 5 HELIX 8 AA8 GLU B 67 ASP B 69 5 3 HELIX 9 AA9 ASP B 70 LEU B 88 1 19 HELIX 10 AB1 GLY B 101 GLY B 105 1 5 SHEET 1 AA110 ILE A 31 GLU A 34 0 SHEET 2 AA110 CYS A 38 HIS A 42 -1 O ALA A 40 N PHE A 33 SHEET 3 AA110 THR A 50 PRO A 56 -1 O LEU A 53 N PHE A 41 SHEET 4 AA110 LEU A 113 GLY A 117 -1 O LEU A 113 N VAL A 54 SHEET 5 AA110 TYR A 94 GLU A 100 -1 N VAL A 97 O HIS A 114 SHEET 6 AA110 TYR B 94 GLU B 100 -1 O MET B 96 N VAL A 98 SHEET 7 AA110 LEU B 113 GLY B 117 -1 O HIS B 114 N VAL B 97 SHEET 8 AA110 THR B 50 PRO B 56 -1 N PHE B 52 O VAL B 115 SHEET 9 AA110 CYS B 38 HIS B 42 -1 N PHE B 41 O LEU B 53 SHEET 10 AA110 ILE B 31 GLU B 34 -1 N ILE B 32 O ALA B 40 CISPEP 1 TRP A 123 PRO A 124 0 4.49 CISPEP 2 TRP B 123 PRO B 124 0 0.70 SITE 1 AC1 19 TRP A 123 PHE B 19 ILE B 22 HIS B 42 SITE 2 AC1 19 ASP B 43 ILE B 44 SER B 45 LEU B 53 SITE 3 AC1 19 ASN B 99 GLY B 105 GLN B 106 SER B 107 SITE 4 AC1 19 VAL B 108 HIS B 112 HIS B 114 HOH B 319 SITE 5 AC1 19 HOH B 338 HOH B 366 HOH B 410 CRYST1 46.031 76.364 80.864 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012366 0.00000