HEADER BIOSYNTHETIC PROTEIN 14-JUN-17 5O8R TITLE THE CRYSTAL STRUCTURE OF DFOA BOUND TO FAD AND NADP; THE TITLE 2 DESFERRIOXAMINE BIOSYNTHETIC PATHWAY CADAVERINE MONOOXYGENASE FROM TITLE 3 THE FIRE BLIGHT DISEASE PATHOGEN ERWINIA AMYLOVORA COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LYSINE 6-MONOOXYGENASE INVOLVED IN DESFERRIOXAMINE COMPND 3 BIOSYNTHESIS; COMPND 4 CHAIN: A, B; COMPND 5 EC: 1.14.13.59; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA AMYLOVORA CFBP1430; SOURCE 3 ORGANISM_TAXID: 665029; SOURCE 4 GENE: DFOA, EAMY_3239; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIDEROPHORE BIOSYNTHESIS, CADAVERINE MONOOXYGENASE, NADP(H), FAD, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SALOMONE-STAGNI,J.D.BARTHO,I.POLSINELLI,D.BELLINI,M.A.WALSH, AUTHOR 2 N.DEMITRI,S.BENINI REVDAT 3 08-MAY-24 5O8R 1 REMARK REVDAT 2 23-MAY-18 5O8R 1 JRNL REVDAT 1 28-FEB-18 5O8R 0 JRNL AUTH M.SALOMONE-STAGNI,J.D.BARTHO,I.POLSINELLI,D.BELLINI, JRNL AUTH 2 M.A.WALSH,N.DEMITRI,S.BENINI JRNL TITL A COMPLETE STRUCTURAL CHARACTERIZATION OF THE JRNL TITL 2 DESFERRIOXAMINE E BIOSYNTHETIC PATHWAY FROM THE FIRE BLIGHT JRNL TITL 3 PATHOGEN ERWINIA AMYLOVORA. JRNL REF J. STRUCT. BIOL. V. 202 236 2018 JRNL REFN ESSN 1095-8657 JRNL PMID 29428557 JRNL DOI 10.1016/J.JSB.2018.02.002 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2895 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3872 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 195 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 202 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.296 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.905 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7502 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6550 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10222 ; 2.122 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15194 ; 1.166 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 862 ; 7.594 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 392 ;36.212 ;23.673 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1217 ;18.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;21.789 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1057 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8307 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1668 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3439 ; 5.245 ; 5.991 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3438 ; 5.232 ; 5.990 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4304 ; 7.915 ; 8.985 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4305 ; 7.915 ; 8.986 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4062 ; 6.475 ; 6.700 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4063 ; 6.475 ; 6.702 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5918 ; 9.914 ; 9.864 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8854 ;13.694 ;70.103 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8853 ;13.700 ;70.115 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.3 M AMMONIUM SULFATE, REMARK 280 PH 7.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.36500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 81.96850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 81.96850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.68250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 81.96850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 81.96850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.04750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 81.96850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.96850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.68250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 81.96850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.96850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 125.04750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.36500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 163.93700 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 163.93700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.36500 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 81.96850 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 81.96850 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -41.68250 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 81.96850 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 81.96850 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 125.04750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ASN A 2 REMARK 465 MET A 430 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 ILE B 246 NH1 ARG B 366 1.78 REMARK 500 O SER B 166 O PRO B 168 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 110 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 353 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 13 67.88 -114.19 REMARK 500 HIS A 44 38.04 74.72 REMARK 500 ALA A 60 58.42 -95.06 REMARK 500 VAL A 63 -35.53 -135.94 REMARK 500 ASP A 67 87.06 -157.97 REMARK 500 PRO A 68 -8.22 -58.25 REMARK 500 CYS A 165 -5.95 -52.36 REMARK 500 THR A 210 -39.40 -38.57 REMARK 500 THR A 241 66.17 -102.82 REMARK 500 ALA A 254 75.50 23.38 REMARK 500 GLN A 264 34.15 -98.99 REMARK 500 THR A 330 140.03 176.59 REMARK 500 ALA A 336 55.46 -108.38 REMARK 500 PHE A 346 -8.66 -55.26 REMARK 500 GLU A 358 -20.37 -33.52 REMARK 500 ASP A 360 30.82 71.90 REMARK 500 GLN A 375 -8.33 -143.86 REMARK 500 PRO A 414 171.67 -51.00 REMARK 500 GLN A 418 48.22 -108.34 REMARK 500 SER B 51 55.82 -103.30 REMARK 500 ASP B 61 -156.01 -97.61 REMARK 500 VAL B 63 -19.03 -142.96 REMARK 500 CYS B 165 30.35 -73.17 REMARK 500 SER B 166 13.11 -143.09 REMARK 500 TYR B 169 -9.97 65.64 REMARK 500 GLN B 264 32.31 -95.06 REMARK 500 ASP B 323 60.42 33.08 REMARK 500 ALA B 336 56.32 -100.48 REMARK 500 ASP B 371 -161.63 -76.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 216 TYR A 217 -129.16 REMARK 500 GLY B 409 ARG B 410 -148.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 502 DBREF 5O8R A 2 430 UNP D4I246 D4I246_ERWAC 2 430 DBREF 5O8R B 2 430 UNP D4I246 D4I246_ERWAC 2 430 SEQADV 5O8R GLY A -2 UNP D4I246 EXPRESSION TAG SEQADV 5O8R ALA A -1 UNP D4I246 EXPRESSION TAG SEQADV 5O8R MET A 0 UNP D4I246 EXPRESSION TAG SEQADV 5O8R ALA A 1 UNP D4I246 EXPRESSION TAG SEQADV 5O8R GLY B -2 UNP D4I246 EXPRESSION TAG SEQADV 5O8R ALA B -1 UNP D4I246 EXPRESSION TAG SEQADV 5O8R MET B 0 UNP D4I246 EXPRESSION TAG SEQADV 5O8R ALA B 1 UNP D4I246 EXPRESSION TAG SEQRES 1 A 433 GLY ALA MET ALA ASN ASN THR ILE TYR ASP PHE ILE GLY SEQRES 2 A 433 ILE GLY ILE GLY PRO PHE ASN LEU GLY LEU ALA CYS LEU SEQRES 3 A 433 SER GLU PRO VAL GLU GLY LEU ASN GLY VAL PHE LEU ASP SEQRES 4 A 433 GLN ASN PRO GLY PHE ASP TRP HIS THR GLY MET MET LEU SEQRES 5 A 433 GLU SER ALA HIS LEU GLN THR PRO PHE MET ALA ASP LEU SEQRES 6 A 433 VAL THR LEU ALA ASP PRO THR SER PRO TYR SER LEU LEU SEQRES 7 A 433 ASN PHE MET LYS GLN LYS GLY LYS LEU TYR SER PHE TYR SEQRES 8 A 433 ILE ARG GLU ASP PHE PHE LEU MET ARG LYS GLU TYR ASN SEQRES 9 A 433 GLN TYR CYS GLN TRP ALA ALA GLU ARG LEU GLY ASN LEU SEQRES 10 A 433 ARG TRP ASN THR ARG VAL GLU TYR VAL SER TYR ASP ASP SEQRES 11 A 433 ASN LEU GLN CYS TYR ARG VAL ARG SER THR ASP THR VAL SEQRES 12 A 433 SER GLY LYS GLN GLN GLU TRP LEU ALA HIS ARG LEU VAL SEQRES 13 A 433 LEU GLY THR GLY PRO SER ALA TRP SER PRO ALA CYS SER SEQRES 14 A 433 GLN PRO TYR ARG GLU ARG PHE VAL HIS SER SER GLU TYR SEQRES 15 A 433 LEU LEU ASN LYS GLU LYS LEU GLN LYS LYS ARG SER ILE SEQRES 16 A 433 THR VAL LEU GLY SER GLY GLN SER ALA ALA GLU ILE TYR SEQRES 17 A 433 TYR ASP LEU LEU THR ASP ILE ASP ARG PHE GLY TYR GLN SEQRES 18 A 433 LEU ASN TRP ILE THR ARG ALA PRO ARG PHE TYR PRO LEU SEQRES 19 A 433 GLU TYR THR LYS LEU THR LEU GLU MET THR SER PRO GLU SEQRES 20 A 433 TRP ILE ASP TYR PHE HIS SER LEU PRO ALA ALA LYS ARG SEQRES 21 A 433 ASP GLU LEU ASN ALA SER GLN LYS ASN LEU TYR LYS GLY SEQRES 22 A 433 ILE ASN SER SER LEU ILE ASN ALA ILE TYR ASP LEU LEU SEQRES 23 A 433 TYR VAL LYS GLN LEU ASP GLY LYS LEU ASP VAL ASN LEU SEQRES 24 A 433 PHE THR HIS SER GLU LEU THR ASP MET ARG TRP LEU ALA SEQRES 25 A 433 GLU GLY GLU PHE GLU LEU LYS LEU HIS GLN GLN GLU GLN SEQRES 26 A 433 ASP ARG ALA TYR SER ARG ARG THR GLU GLY LEU VAL MET SEQRES 27 A 433 ALA THR GLY TYR HIS TYR GLN PRO PRO ALA PHE VAL GLU SEQRES 28 A 433 GLY ILE GLN GLN ARG ILE GLN TRP ASP GLU LYS ASP ARG SEQRES 29 A 433 TYR ASP VAL GLN ARG ASN TYR SER ILE ASP ARG HIS ASN SEQRES 30 A 433 GLN VAL PHE VAL GLN ASN ALA GLU LEU HIS THR HIS GLY SEQRES 31 A 433 PHE VAL THR PRO ASP LEU GLY MET ALA CYS TYR ARG ASN SEQRES 32 A 433 SER VAL LEU LEU ARG GLU ILE THR GLY ARG GLU VAL TYR SEQRES 33 A 433 PRO VAL GLU ARG GLN ILE ALA PHE GLN THR PHE PRO ALA SEQRES 34 A 433 GLN SER GLU MET SEQRES 1 B 433 GLY ALA MET ALA ASN ASN THR ILE TYR ASP PHE ILE GLY SEQRES 2 B 433 ILE GLY ILE GLY PRO PHE ASN LEU GLY LEU ALA CYS LEU SEQRES 3 B 433 SER GLU PRO VAL GLU GLY LEU ASN GLY VAL PHE LEU ASP SEQRES 4 B 433 GLN ASN PRO GLY PHE ASP TRP HIS THR GLY MET MET LEU SEQRES 5 B 433 GLU SER ALA HIS LEU GLN THR PRO PHE MET ALA ASP LEU SEQRES 6 B 433 VAL THR LEU ALA ASP PRO THR SER PRO TYR SER LEU LEU SEQRES 7 B 433 ASN PHE MET LYS GLN LYS GLY LYS LEU TYR SER PHE TYR SEQRES 8 B 433 ILE ARG GLU ASP PHE PHE LEU MET ARG LYS GLU TYR ASN SEQRES 9 B 433 GLN TYR CYS GLN TRP ALA ALA GLU ARG LEU GLY ASN LEU SEQRES 10 B 433 ARG TRP ASN THR ARG VAL GLU TYR VAL SER TYR ASP ASP SEQRES 11 B 433 ASN LEU GLN CYS TYR ARG VAL ARG SER THR ASP THR VAL SEQRES 12 B 433 SER GLY LYS GLN GLN GLU TRP LEU ALA HIS ARG LEU VAL SEQRES 13 B 433 LEU GLY THR GLY PRO SER ALA TRP SER PRO ALA CYS SER SEQRES 14 B 433 GLN PRO TYR ARG GLU ARG PHE VAL HIS SER SER GLU TYR SEQRES 15 B 433 LEU LEU ASN LYS GLU LYS LEU GLN LYS LYS ARG SER ILE SEQRES 16 B 433 THR VAL LEU GLY SER GLY GLN SER ALA ALA GLU ILE TYR SEQRES 17 B 433 TYR ASP LEU LEU THR ASP ILE ASP ARG PHE GLY TYR GLN SEQRES 18 B 433 LEU ASN TRP ILE THR ARG ALA PRO ARG PHE TYR PRO LEU SEQRES 19 B 433 GLU TYR THR LYS LEU THR LEU GLU MET THR SER PRO GLU SEQRES 20 B 433 TRP ILE ASP TYR PHE HIS SER LEU PRO ALA ALA LYS ARG SEQRES 21 B 433 ASP GLU LEU ASN ALA SER GLN LYS ASN LEU TYR LYS GLY SEQRES 22 B 433 ILE ASN SER SER LEU ILE ASN ALA ILE TYR ASP LEU LEU SEQRES 23 B 433 TYR VAL LYS GLN LEU ASP GLY LYS LEU ASP VAL ASN LEU SEQRES 24 B 433 PHE THR HIS SER GLU LEU THR ASP MET ARG TRP LEU ALA SEQRES 25 B 433 GLU GLY GLU PHE GLU LEU LYS LEU HIS GLN GLN GLU GLN SEQRES 26 B 433 ASP ARG ALA TYR SER ARG ARG THR GLU GLY LEU VAL MET SEQRES 27 B 433 ALA THR GLY TYR HIS TYR GLN PRO PRO ALA PHE VAL GLU SEQRES 28 B 433 GLY ILE GLN GLN ARG ILE GLN TRP ASP GLU LYS ASP ARG SEQRES 29 B 433 TYR ASP VAL GLN ARG ASN TYR SER ILE ASP ARG HIS ASN SEQRES 30 B 433 GLN VAL PHE VAL GLN ASN ALA GLU LEU HIS THR HIS GLY SEQRES 31 B 433 PHE VAL THR PRO ASP LEU GLY MET ALA CYS TYR ARG ASN SEQRES 32 B 433 SER VAL LEU LEU ARG GLU ILE THR GLY ARG GLU VAL TYR SEQRES 33 B 433 PRO VAL GLU ARG GLN ILE ALA PHE GLN THR PHE PRO ALA SEQRES 34 B 433 GLN SER GLU MET HET FAD A 501 53 HET NAP A 502 48 HET FAD B 501 53 HET NAP B 502 48 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 NAP 2(C21 H28 N7 O17 P3) FORMUL 7 HOH *81(H2 O) HELIX 1 AA1 GLY A 14 GLU A 25 1 12 HELIX 2 AA2 SER A 73 LYS A 81 1 9 HELIX 3 AA3 LYS A 83 GLU A 91 1 9 HELIX 4 AA4 MET A 96 LEU A 111 1 16 HELIX 5 AA5 PRO A 163 ARG A 170 5 8 HELIX 6 AA6 GLU A 178 LYS A 188 1 11 HELIX 7 AA7 GLY A 198 THR A 210 1 13 HELIX 8 AA8 THR A 234 GLU A 239 1 6 HELIX 9 AA9 SER A 242 HIS A 250 1 9 HELIX 10 AB1 ASP A 258 GLN A 264 1 7 HELIX 11 AB2 LYS A 265 TYR A 268 5 4 HELIX 12 AB3 ASN A 272 LEU A 288 1 17 HELIX 13 AB4 PRO A 344 ILE A 354 5 11 HELIX 14 AB5 HIS A 386 THR A 390 5 5 HELIX 15 AB6 ASP A 392 GLY A 394 5 3 HELIX 16 AB7 MET A 395 GLY A 409 1 15 HELIX 17 AB8 GLY B 14 GLU B 25 1 12 HELIX 18 AB9 HIS B 44 MET B 48 5 5 HELIX 19 AC1 SER B 73 LYS B 81 1 9 HELIX 20 AC2 LYS B 83 GLU B 91 1 9 HELIX 21 AC3 MET B 96 LEU B 111 1 16 HELIX 22 AC4 PRO B 163 GLN B 167 5 5 HELIX 23 AC5 SER B 177 TYR B 179 5 3 HELIX 24 AC6 LEU B 180 LEU B 181 5 2 HELIX 25 AC7 ASN B 182 LYS B 188 1 7 HELIX 26 AC8 GLY B 198 ASP B 211 1 14 HELIX 27 AC9 THR B 234 GLU B 239 1 6 HELIX 28 AD1 SER B 242 LEU B 252 1 11 HELIX 29 AD2 PRO B 253 GLN B 264 1 12 HELIX 30 AD3 GLN B 264 LYS B 269 1 6 HELIX 31 AD4 ASN B 272 LEU B 288 1 17 HELIX 32 AD5 PRO B 344 PHE B 346 5 3 HELIX 33 AD6 VAL B 347 GLN B 352 1 6 HELIX 34 AD7 GLU B 382 GLY B 387 1 6 HELIX 35 AD8 MET B 395 THR B 408 1 14 SHEET 1 AA1 4 ILE A 5 TYR A 6 0 SHEET 2 AA1 4 GLN A 144 ALA A 149 1 O LEU A 148 N TYR A 6 SHEET 3 AA1 4 TYR A 132 ASP A 138 -1 N TYR A 132 O ALA A 149 SHEET 4 AA1 4 THR A 118 TYR A 125 -1 N TYR A 122 O ARG A 135 SHEET 1 AA2 5 LEU A 114 ARG A 115 0 SHEET 2 AA2 5 GLY A 32 LEU A 35 1 N PHE A 34 O ARG A 115 SHEET 3 AA2 5 PHE A 8 ILE A 11 1 N GLY A 10 O LEU A 35 SHEET 4 AA2 5 LEU A 152 LEU A 154 1 O VAL A 153 N ILE A 9 SHEET 5 AA2 5 VAL A 376 VAL A 378 1 O PHE A 377 N LEU A 152 SHEET 1 AA3 2 SER A 159 ALA A 160 0 SHEET 2 AA3 2 TYR A 339 HIS A 340 -1 O HIS A 340 N SER A 159 SHEET 1 AA4 5 VAL A 174 HIS A 175 0 SHEET 2 AA4 5 GLY A 332 MET A 335 1 O LEU A 333 N VAL A 174 SHEET 3 AA4 5 SER A 191 LEU A 195 1 N SER A 191 O GLY A 332 SHEET 4 AA4 5 GLN A 218 ILE A 222 1 O GLN A 218 N ILE A 192 SHEET 5 AA4 5 VAL A 294 PHE A 297 1 O PHE A 297 N TRP A 221 SHEET 1 AA5 3 SER A 300 LEU A 308 0 SHEET 2 AA5 3 GLU A 312 GLN A 319 -1 O LYS A 316 N ASP A 304 SHEET 3 AA5 3 ARG A 324 THR A 330 -1 O ARG A 328 N LEU A 315 SHEET 1 AA6 2 TRP A 356 ASP A 357 0 SHEET 2 AA6 2 ARG A 361 TYR A 362 -1 O ARG A 361 N ASP A 357 SHEET 1 AA7 6 LEU B 114 ARG B 115 0 SHEET 2 AA7 6 GLY B 32 LEU B 35 1 N PHE B 34 O ARG B 115 SHEET 3 AA7 6 ILE B 5 GLY B 10 1 N GLY B 10 O VAL B 33 SHEET 4 AA7 6 GLN B 144 LEU B 154 1 O LEU B 148 N TYR B 6 SHEET 5 AA7 6 CYS B 131 ASP B 138 -1 N TYR B 132 O ALA B 149 SHEET 6 AA7 6 THR B 118 ASP B 126 -1 N TYR B 122 O ARG B 135 SHEET 1 AA8 5 LEU B 114 ARG B 115 0 SHEET 2 AA8 5 GLY B 32 LEU B 35 1 N PHE B 34 O ARG B 115 SHEET 3 AA8 5 ILE B 5 GLY B 10 1 N GLY B 10 O VAL B 33 SHEET 4 AA8 5 GLN B 144 LEU B 154 1 O LEU B 148 N TYR B 6 SHEET 5 AA8 5 VAL B 376 VAL B 378 1 O PHE B 377 N LEU B 152 SHEET 1 AA9 2 SER B 159 ALA B 160 0 SHEET 2 AA9 2 TYR B 339 HIS B 340 -1 O HIS B 340 N SER B 159 SHEET 1 AB1 5 VAL B 174 HIS B 175 0 SHEET 2 AB1 5 GLY B 332 MET B 335 1 O MET B 335 N VAL B 174 SHEET 3 AB1 5 SER B 191 LEU B 195 1 N SER B 191 O GLY B 332 SHEET 4 AB1 5 GLN B 218 ILE B 222 1 O GLN B 218 N ILE B 192 SHEET 5 AB1 5 VAL B 294 PHE B 297 1 O PHE B 297 N TRP B 221 SHEET 1 AB2 3 SER B 300 TRP B 307 0 SHEET 2 AB2 3 PHE B 313 GLN B 319 -1 O LYS B 316 N ASP B 304 SHEET 3 AB2 3 ARG B 324 ARG B 329 -1 O TYR B 326 N LEU B 317 SITE 1 AC1 24 GLY A 14 PRO A 15 PHE A 16 ASP A 36 SITE 2 AC1 24 GLN A 37 ASN A 38 TRP A 43 HIS A 44 SITE 3 AC1 24 LEU A 54 GLN A 55 THR A 56 VAL A 120 SITE 4 AC1 24 GLY A 155 THR A 156 GLY A 157 PRO A 158 SITE 5 AC1 24 PHE A 346 ASN A 380 PRO A 391 ASP A 392 SITE 6 AC1 24 LEU A 393 NAP A 502 HOH A 616 HOH A 626 SITE 1 AC2 22 GLN A 55 ARG A 97 LEU A 195 GLY A 196 SITE 2 AC2 22 SER A 197 GLY A 198 GLN A 199 SER A 200 SITE 3 AC2 22 THR A 223 ARG A 224 ALA A 225 TYR A 229 SITE 4 AC2 22 LYS A 265 LYS A 269 SER A 300 LEU A 302 SITE 5 AC2 22 ALA A 336 THR A 337 GLY A 338 PRO A 391 SITE 6 AC2 22 FAD A 501 HOH A 614 SITE 1 AC3 27 GLY B 12 ILE B 13 GLY B 14 PRO B 15 SITE 2 AC3 27 PHE B 16 ASP B 36 GLN B 37 ASN B 38 SITE 3 AC3 27 TRP B 43 HIS B 44 MET B 47 LEU B 54 SITE 4 AC3 27 GLN B 55 ARG B 97 THR B 118 VAL B 120 SITE 5 AC3 27 GLY B 155 THR B 156 GLY B 157 TYR B 339 SITE 6 AC3 27 PHE B 346 ASN B 380 PRO B 391 ASP B 392 SITE 7 AC3 27 LEU B 393 NAP B 502 HOH B 609 SITE 1 AC4 22 HIS B 53 GLN B 55 ARG B 97 LEU B 195 SITE 2 AC4 22 GLY B 196 SER B 197 GLY B 198 GLN B 199 SITE 3 AC4 22 SER B 200 GLU B 203 THR B 223 ARG B 224 SITE 4 AC4 22 TYR B 229 TYR B 268 LYS B 269 LEU B 302 SITE 5 AC4 22 ALA B 336 THR B 337 GLY B 338 TYR B 339 SITE 6 AC4 22 FAD B 501 HOH B 614 CRYST1 163.937 163.937 166.730 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005998 0.00000