HEADER TRANSFERASE 15-JUN-17 5O95 TITLE STRUCTURE OF THE PUTATIVE METHYLTRANSFERASE LPG2936 FROM LEGIONELLA TITLE 2 PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.193; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: LPG2936; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA METHYLTRANSFERASE, RSME-LIKE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.PINOTSIS,G.WAKSMAN REVDAT 3 17-JAN-24 5O95 1 REMARK REVDAT 2 29-NOV-17 5O95 1 JRNL REVDAT 1 08-NOV-17 5O95 0 JRNL AUTH N.PINOTSIS,G.WAKSMAN JRNL TITL CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA LPG2936 IN JRNL TITL 2 COMPLEX WITH THE COFACTOR S-ADENOSYL-L-METHIONINE REVEALS JRNL TITL 3 NOVEL INSIGHTS INTO THE MECHANISM OF RSME FAMILY JRNL TITL 4 METHYLTRANSFERASES. JRNL REF PROTEIN SCI. V. 26 2381 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28940762 JRNL DOI 10.1002/PRO.3305 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 173103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 8553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.5487 - 2.4211 0.94 5484 289 0.1612 0.2028 REMARK 3 2 1.5700 - 1.4910 0.89 23778 228 0.3976 0.3723 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 8016 REMARK 3 ANGLE : 0.857 10868 REMARK 3 CHIRALITY : 0.081 1225 REMARK 3 PLANARITY : 0.006 1429 REMARK 3 DIHEDRAL : 17.860 3134 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND ((RESSEQ 4:153)) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7417 18.2647 7.4441 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.1560 REMARK 3 T33: 0.1913 T12: 0.0029 REMARK 3 T13: -0.0184 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.5381 L22: 2.8682 REMARK 3 L33: 1.2258 L12: 0.7087 REMARK 3 L13: 0.4406 L23: 1.4363 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.1446 S13: 0.1082 REMARK 3 S21: 0.3913 S22: -0.1477 S23: 0.2217 REMARK 3 S31: 0.0558 S32: -0.1318 S33: 0.1020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND ((RESSEQ 154:244)) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0158 -3.5854 -4.4441 REMARK 3 T TENSOR REMARK 3 T11: 0.1111 T22: 0.1175 REMARK 3 T33: 0.1524 T12: -0.0168 REMARK 3 T13: -0.0078 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.6102 L22: 1.8416 REMARK 3 L33: 2.0674 L12: -0.1342 REMARK 3 L13: 0.6128 L23: 0.0118 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: -0.1257 S13: -0.0527 REMARK 3 S21: 0.0587 S22: -0.0161 S23: 0.2930 REMARK 3 S31: 0.1438 S32: -0.2315 S33: -0.0435 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND ((RESSEQ 4:153)) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9820 -16.0641 13.7975 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.1466 REMARK 3 T33: 0.1527 T12: 0.0208 REMARK 3 T13: -0.0078 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.8164 L22: 2.7350 REMARK 3 L33: 0.9415 L12: 0.5772 REMARK 3 L13: 0.2419 L23: -0.9463 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.1218 S13: 0.0606 REMARK 3 S21: 0.1716 S22: -0.0666 S23: 0.0037 REMARK 3 S31: -0.0343 S32: -0.0292 S33: 0.0090 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND ((RESSEQ 154:244)) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5678 1.1209 -1.9396 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1837 REMARK 3 T33: 0.2087 T12: -0.0073 REMARK 3 T13: 0.0321 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 2.3403 L22: 1.1073 REMARK 3 L33: 1.2750 L12: -0.2271 REMARK 3 L13: 0.6612 L23: -0.4326 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: 0.1800 S13: 0.2043 REMARK 3 S21: -0.1734 S22: -0.0675 S23: -0.3148 REMARK 3 S31: -0.0702 S32: 0.3195 S33: 0.1072 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 1:153)) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2259 -12.8663 40.8102 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.1463 REMARK 3 T33: 0.1129 T12: 0.0346 REMARK 3 T13: -0.0184 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.0932 L22: 2.7035 REMARK 3 L33: 0.9087 L12: 1.0043 REMARK 3 L13: 0.1513 L23: -0.3526 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0350 S13: -0.0713 REMARK 3 S21: 0.0089 S22: -0.0705 S23: -0.1831 REMARK 3 S31: 0.0659 S32: 0.1245 S33: 0.0635 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 154:244)) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3595 -30.7376 47.2602 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.1662 REMARK 3 T33: 0.1204 T12: -0.0177 REMARK 3 T13: 0.0382 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.3826 L22: 1.4019 REMARK 3 L33: 2.4555 L12: 0.2851 REMARK 3 L13: 0.3973 L23: 0.2652 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: -0.2814 S13: -0.0780 REMARK 3 S21: 0.2892 S22: -0.0344 S23: 0.1565 REMARK 3 S31: 0.2061 S32: -0.2012 S33: -0.0184 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 3:153)) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3457 -47.6249 27.4385 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.1578 REMARK 3 T33: 0.1905 T12: 0.0156 REMARK 3 T13: -0.0064 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.9809 L22: 2.9062 REMARK 3 L33: 0.8435 L12: -1.1481 REMARK 3 L13: 0.6199 L23: -0.9092 REMARK 3 S TENSOR REMARK 3 S11: 0.1126 S12: 0.1290 S13: 0.0444 REMARK 3 S21: -0.1752 S22: -0.1530 S23: -0.3724 REMARK 3 S31: 0.1347 S32: 0.2013 S33: 0.0435 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 154:244)) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4565 -25.6681 19.2587 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.1241 REMARK 3 T33: 0.1131 T12: 0.0040 REMARK 3 T13: -0.0017 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.7950 L22: 1.8005 REMARK 3 L33: 1.8245 L12: 0.0380 REMARK 3 L13: 0.5859 L23: 0.2065 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: 0.1991 S13: 0.0945 REMARK 3 S21: -0.2458 S22: -0.0050 S23: -0.1050 REMARK 3 S31: -0.0904 S32: 0.1383 S33: 0.0653 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9650 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 173267 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 47.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.75200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1NXZ REMARK 200 REMARK 200 REMARK: BEAUTIFUL CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OPTIMISED FROM MORPHEUS SCREEN: REMARK 280 MES/IMIDAZOLE PH 6.5 0.1 M EDO_PEG8K 27% ALCOHOLS: 0.14 M, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.38850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 ALA A 2 REMARK 465 GLY B 0 REMARK 465 GLY C 0 REMARK 465 GLY D 0 REMARK 465 PRO D 1 REMARK 465 ALA D 2 REMARK 465 VAL D 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN C 15 O HOH C 301 2.07 REMARK 500 O HOH B 367 O HOH B 511 2.08 REMARK 500 O HOH D 390 O HOH D 511 2.09 REMARK 500 O HOH C 463 O HOH C 506 2.09 REMARK 500 O HOH B 440 O HOH B 540 2.10 REMARK 500 O HOH B 406 O HOH B 511 2.10 REMARK 500 O HOH A 345 O HOH A 396 2.11 REMARK 500 O HOH C 446 O HOH C 575 2.12 REMARK 500 O HOH D 317 O HOH D 478 2.12 REMARK 500 OE1 GLU D 13 O HOH D 301 2.12 REMARK 500 O HOH B 539 O HOH B 604 2.13 REMARK 500 O HOH C 546 O HOH D 530 2.13 REMARK 500 O HOH A 526 O HOH C 543 2.13 REMARK 500 O HOH C 452 O HOH C 524 2.14 REMARK 500 OE1 GLU B 73 O HOH B 301 2.15 REMARK 500 O HOH C 454 O HOH C 525 2.15 REMARK 500 O HOH A 510 O HOH A 559 2.16 REMARK 500 OD2 ASP C 183 O HOH C 302 2.16 REMARK 500 O HOH C 450 O HOH C 569 2.16 REMARK 500 O HOH A 529 O HOH C 472 2.17 REMARK 500 O HOH D 383 O HOH D 442 2.17 REMARK 500 OE2 GLU A 13 O HOH A 301 2.17 REMARK 500 O HOH A 348 O HOH A 528 2.17 REMARK 500 O HOH B 384 O HOH B 555 2.17 REMARK 500 NE2 GLN C 15 O HOH C 303 2.17 REMARK 500 OD2 ASP B 183 O HOH B 302 2.17 REMARK 500 O HOH D 315 O HOH D 498 2.18 REMARK 500 O HOH B 503 O HOH B 576 2.18 REMARK 500 O HOH A 466 O HOH A 588 2.18 REMARK 500 O HOH A 569 O HOH A 591 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 516 O HOH D 548 1656 2.17 REMARK 500 O HOH B 516 O HOH D 501 1656 2.18 REMARK 500 O HOH B 566 O HOH C 559 1656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 61 -120.52 57.03 REMARK 500 LYS B 61 -117.28 57.98 REMARK 500 LEU B 219 55.93 -140.62 REMARK 500 LYS C 61 -102.91 45.94 REMARK 500 LYS D 61 -107.12 45.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 623 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH D 566 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH D 567 DISTANCE = 6.59 ANGSTROMS DBREF 5O95 A 2 244 UNP Q5ZRE6 Q5ZRE6_LEGPH 2 244 DBREF 5O95 B 2 244 UNP Q5ZRE6 Q5ZRE6_LEGPH 2 244 DBREF 5O95 C 2 244 UNP Q5ZRE6 Q5ZRE6_LEGPH 2 244 DBREF 5O95 D 2 244 UNP Q5ZRE6 Q5ZRE6_LEGPH 2 244 SEQADV 5O95 GLY A 0 UNP Q5ZRE6 EXPRESSION TAG SEQADV 5O95 PRO A 1 UNP Q5ZRE6 EXPRESSION TAG SEQADV 5O95 GLY B 0 UNP Q5ZRE6 EXPRESSION TAG SEQADV 5O95 PRO B 1 UNP Q5ZRE6 EXPRESSION TAG SEQADV 5O95 GLY C 0 UNP Q5ZRE6 EXPRESSION TAG SEQADV 5O95 PRO C 1 UNP Q5ZRE6 EXPRESSION TAG SEQADV 5O95 GLY D 0 UNP Q5ZRE6 EXPRESSION TAG SEQADV 5O95 PRO D 1 UNP Q5ZRE6 EXPRESSION TAG SEQRES 1 A 245 GLY PRO ALA VAL ARG THR ILE ARG ILE TYR GLN PRO GLY SEQRES 2 A 245 GLU TYR GLN PRO GLY GLN LEU LEU GLU LEU SER PRO GLU SEQRES 3 A 245 ALA GLY GLN HIS VAL GLY VAL VAL LEU ARG MET GLU GLN SEQRES 4 A 245 GLY GLU GLN LEU THR LEU PHE ASN GLY ASP ASN LYS GLU SEQRES 5 A 245 PHE THR ALA SER ILE GLU ARG VAL LYS LYS LYS GLN VAL SEQRES 6 A 245 PHE VAL ARG ILE ALA SER VAL LEU GLU VAL ASN ARG GLU SEQRES 7 A 245 SER PRO LEU LYS ILE HIS LEU ALA GLN ALA ILE SER LYS SEQRES 8 A 245 GLY GLU ARG MET GLU MET VAL MET GLN LYS SER ALA GLU SEQRES 9 A 245 LEU GLY VAL ALA CYS ILE THR PRO LEU ILE THR GLU ARG SEQRES 10 A 245 CYS GLN VAL LYS ILE ASP LYS GLU LYS MET ALA LYS LYS SEQRES 11 A 245 MET HIS GLN TRP LEU ASN ILE ILE ILE GLY ALA CYS GLU SEQRES 12 A 245 GLN CYS GLY ARG ASN GLN ILE PRO GLU LEU ARG GLN PRO SEQRES 13 A 245 VAL TYR LEU ASP GLN PHE VAL ARG GLU ALA LYS GLU HIS SEQRES 14 A 245 LEU LYS LEU ILE LEU HIS PRO ALA PHE SER LYS THR TRP SEQRES 15 A 245 ARG ASP TYR PRO VAL GLN PRO PRO ASP VAL ALA LEU ILE SEQRES 16 A 245 ILE GLY PRO GLU GLY GLY PHE SER ASP GLU GLU ILE ARG SEQRES 17 A 245 LEU THR SER GLY HIS GLY PHE LEU PRO LEU SER LEU GLY SEQRES 18 A 245 PRO ARG VAL LEU ARG THR GLU THR ALA ALA ILE THR ALA SEQRES 19 A 245 LEU SER VAL LEU GLN ALA ALA GLY GLY ASP LEU SEQRES 1 B 245 GLY PRO ALA VAL ARG THR ILE ARG ILE TYR GLN PRO GLY SEQRES 2 B 245 GLU TYR GLN PRO GLY GLN LEU LEU GLU LEU SER PRO GLU SEQRES 3 B 245 ALA GLY GLN HIS VAL GLY VAL VAL LEU ARG MET GLU GLN SEQRES 4 B 245 GLY GLU GLN LEU THR LEU PHE ASN GLY ASP ASN LYS GLU SEQRES 5 B 245 PHE THR ALA SER ILE GLU ARG VAL LYS LYS LYS GLN VAL SEQRES 6 B 245 PHE VAL ARG ILE ALA SER VAL LEU GLU VAL ASN ARG GLU SEQRES 7 B 245 SER PRO LEU LYS ILE HIS LEU ALA GLN ALA ILE SER LYS SEQRES 8 B 245 GLY GLU ARG MET GLU MET VAL MET GLN LYS SER ALA GLU SEQRES 9 B 245 LEU GLY VAL ALA CYS ILE THR PRO LEU ILE THR GLU ARG SEQRES 10 B 245 CYS GLN VAL LYS ILE ASP LYS GLU LYS MET ALA LYS LYS SEQRES 11 B 245 MET HIS GLN TRP LEU ASN ILE ILE ILE GLY ALA CYS GLU SEQRES 12 B 245 GLN CYS GLY ARG ASN GLN ILE PRO GLU LEU ARG GLN PRO SEQRES 13 B 245 VAL TYR LEU ASP GLN PHE VAL ARG GLU ALA LYS GLU HIS SEQRES 14 B 245 LEU LYS LEU ILE LEU HIS PRO ALA PHE SER LYS THR TRP SEQRES 15 B 245 ARG ASP TYR PRO VAL GLN PRO PRO ASP VAL ALA LEU ILE SEQRES 16 B 245 ILE GLY PRO GLU GLY GLY PHE SER ASP GLU GLU ILE ARG SEQRES 17 B 245 LEU THR SER GLY HIS GLY PHE LEU PRO LEU SER LEU GLY SEQRES 18 B 245 PRO ARG VAL LEU ARG THR GLU THR ALA ALA ILE THR ALA SEQRES 19 B 245 LEU SER VAL LEU GLN ALA ALA GLY GLY ASP LEU SEQRES 1 C 245 GLY PRO ALA VAL ARG THR ILE ARG ILE TYR GLN PRO GLY SEQRES 2 C 245 GLU TYR GLN PRO GLY GLN LEU LEU GLU LEU SER PRO GLU SEQRES 3 C 245 ALA GLY GLN HIS VAL GLY VAL VAL LEU ARG MET GLU GLN SEQRES 4 C 245 GLY GLU GLN LEU THR LEU PHE ASN GLY ASP ASN LYS GLU SEQRES 5 C 245 PHE THR ALA SER ILE GLU ARG VAL LYS LYS LYS GLN VAL SEQRES 6 C 245 PHE VAL ARG ILE ALA SER VAL LEU GLU VAL ASN ARG GLU SEQRES 7 C 245 SER PRO LEU LYS ILE HIS LEU ALA GLN ALA ILE SER LYS SEQRES 8 C 245 GLY GLU ARG MET GLU MET VAL MET GLN LYS SER ALA GLU SEQRES 9 C 245 LEU GLY VAL ALA CYS ILE THR PRO LEU ILE THR GLU ARG SEQRES 10 C 245 CYS GLN VAL LYS ILE ASP LYS GLU LYS MET ALA LYS LYS SEQRES 11 C 245 MET HIS GLN TRP LEU ASN ILE ILE ILE GLY ALA CYS GLU SEQRES 12 C 245 GLN CYS GLY ARG ASN GLN ILE PRO GLU LEU ARG GLN PRO SEQRES 13 C 245 VAL TYR LEU ASP GLN PHE VAL ARG GLU ALA LYS GLU HIS SEQRES 14 C 245 LEU LYS LEU ILE LEU HIS PRO ALA PHE SER LYS THR TRP SEQRES 15 C 245 ARG ASP TYR PRO VAL GLN PRO PRO ASP VAL ALA LEU ILE SEQRES 16 C 245 ILE GLY PRO GLU GLY GLY PHE SER ASP GLU GLU ILE ARG SEQRES 17 C 245 LEU THR SER GLY HIS GLY PHE LEU PRO LEU SER LEU GLY SEQRES 18 C 245 PRO ARG VAL LEU ARG THR GLU THR ALA ALA ILE THR ALA SEQRES 19 C 245 LEU SER VAL LEU GLN ALA ALA GLY GLY ASP LEU SEQRES 1 D 245 GLY PRO ALA VAL ARG THR ILE ARG ILE TYR GLN PRO GLY SEQRES 2 D 245 GLU TYR GLN PRO GLY GLN LEU LEU GLU LEU SER PRO GLU SEQRES 3 D 245 ALA GLY GLN HIS VAL GLY VAL VAL LEU ARG MET GLU GLN SEQRES 4 D 245 GLY GLU GLN LEU THR LEU PHE ASN GLY ASP ASN LYS GLU SEQRES 5 D 245 PHE THR ALA SER ILE GLU ARG VAL LYS LYS LYS GLN VAL SEQRES 6 D 245 PHE VAL ARG ILE ALA SER VAL LEU GLU VAL ASN ARG GLU SEQRES 7 D 245 SER PRO LEU LYS ILE HIS LEU ALA GLN ALA ILE SER LYS SEQRES 8 D 245 GLY GLU ARG MET GLU MET VAL MET GLN LYS SER ALA GLU SEQRES 9 D 245 LEU GLY VAL ALA CYS ILE THR PRO LEU ILE THR GLU ARG SEQRES 10 D 245 CYS GLN VAL LYS ILE ASP LYS GLU LYS MET ALA LYS LYS SEQRES 11 D 245 MET HIS GLN TRP LEU ASN ILE ILE ILE GLY ALA CYS GLU SEQRES 12 D 245 GLN CYS GLY ARG ASN GLN ILE PRO GLU LEU ARG GLN PRO SEQRES 13 D 245 VAL TYR LEU ASP GLN PHE VAL ARG GLU ALA LYS GLU HIS SEQRES 14 D 245 LEU LYS LEU ILE LEU HIS PRO ALA PHE SER LYS THR TRP SEQRES 15 D 245 ARG ASP TYR PRO VAL GLN PRO PRO ASP VAL ALA LEU ILE SEQRES 16 D 245 ILE GLY PRO GLU GLY GLY PHE SER ASP GLU GLU ILE ARG SEQRES 17 D 245 LEU THR SER GLY HIS GLY PHE LEU PRO LEU SER LEU GLY SEQRES 18 D 245 PRO ARG VAL LEU ARG THR GLU THR ALA ALA ILE THR ALA SEQRES 19 D 245 LEU SER VAL LEU GLN ALA ALA GLY GLY ASP LEU FORMUL 5 HOH *1201(H2 O) HELIX 1 AA1 SER A 23 VAL A 32 1 10 HELIX 2 AA2 ARG A 93 LEU A 104 1 12 HELIX 3 AA3 ASP A 122 GLY A 145 1 24 HELIX 4 AA4 LEU A 158 ALA A 165 1 8 HELIX 5 AA5 PRO A 175 LYS A 179 5 5 HELIX 6 AA6 THR A 180 TYR A 184 5 5 HELIX 7 AA7 SER A 202 HIS A 212 1 11 HELIX 8 AA8 ARG A 225 GLY A 242 1 18 HELIX 9 AA9 SER B 23 VAL B 32 1 10 HELIX 10 AB1 GLU B 92 LEU B 104 1 13 HELIX 11 AB2 ASP B 122 GLY B 145 1 24 HELIX 12 AB3 LEU B 158 ALA B 165 1 8 HELIX 13 AB4 THR B 180 TYR B 184 5 5 HELIX 14 AB5 SER B 202 HIS B 212 1 11 HELIX 15 AB6 ARG B 225 GLY B 242 1 18 HELIX 16 AB7 SER C 23 VAL C 32 1 10 HELIX 17 AB8 GLU C 92 LEU C 104 1 13 HELIX 18 AB9 ASP C 122 GLY C 145 1 24 HELIX 19 AC1 LEU C 158 ALA C 165 1 8 HELIX 20 AC2 THR C 180 TYR C 184 5 5 HELIX 21 AC3 SER C 202 HIS C 212 1 11 HELIX 22 AC4 ARG C 225 GLY C 242 1 18 HELIX 23 AC5 SER D 23 VAL D 32 1 10 HELIX 24 AC6 GLY D 91 LEU D 104 1 14 HELIX 25 AC7 ASP D 122 GLY D 145 1 24 HELIX 26 AC8 LEU D 158 ALA D 165 1 8 HELIX 27 AC9 PRO D 175 LYS D 179 5 5 HELIX 28 AD1 THR D 180 TYR D 184 5 5 HELIX 29 AD2 SER D 202 HIS D 212 1 11 HELIX 30 AD3 ARG D 225 GLY D 242 1 18 SHEET 1 AA1 5 ARG A 7 TYR A 9 0 SHEET 2 AA1 5 GLN A 41 PHE A 45 1 O THR A 43 N ILE A 8 SHEET 3 AA1 5 LYS A 50 LYS A 60 -1 O PHE A 52 N LEU A 44 SHEET 4 AA1 5 GLN A 63 GLU A 73 -1 O PHE A 65 N ARG A 58 SHEET 5 AA1 5 LEU A 19 GLU A 21 -1 N LEU A 20 O VAL A 66 SHEET 1 AA2 3 GLU A 151 LEU A 152 0 SHEET 2 AA2 3 CYS A 108 ILE A 113 1 N ILE A 109 O GLU A 151 SHEET 3 AA2 3 VAL A 156 TYR A 157 1 O VAL A 156 N ILE A 113 SHEET 1 AA3 6 GLU A 151 LEU A 152 0 SHEET 2 AA3 6 CYS A 108 ILE A 113 1 N ILE A 109 O GLU A 151 SHEET 3 AA3 6 LYS A 81 ALA A 87 1 N LEU A 84 O THR A 110 SHEET 4 AA3 6 ASP A 190 ILE A 195 1 O LEU A 193 N ALA A 85 SHEET 5 AA3 6 LYS A 170 LEU A 173 1 N LEU A 171 O ALA A 192 SHEET 6 AA3 6 LEU A 215 LEU A 217 1 O LEU A 215 N LYS A 170 SHEET 1 AA4 5 ARG B 7 TYR B 9 0 SHEET 2 AA4 5 GLN B 41 PHE B 45 1 O THR B 43 N ILE B 8 SHEET 3 AA4 5 LYS B 50 LYS B 60 -1 O PHE B 52 N LEU B 44 SHEET 4 AA4 5 GLN B 63 GLU B 73 -1 O ALA B 69 N THR B 53 SHEET 5 AA4 5 LEU B 19 GLU B 21 -1 N LEU B 20 O VAL B 66 SHEET 1 AA5 3 GLU B 151 LEU B 152 0 SHEET 2 AA5 3 CYS B 108 ILE B 113 1 N ILE B 109 O GLU B 151 SHEET 3 AA5 3 VAL B 156 TYR B 157 1 O VAL B 156 N ILE B 113 SHEET 1 AA6 6 GLU B 151 LEU B 152 0 SHEET 2 AA6 6 CYS B 108 ILE B 113 1 N ILE B 109 O GLU B 151 SHEET 3 AA6 6 LYS B 81 ALA B 87 1 N LEU B 84 O THR B 110 SHEET 4 AA6 6 ASP B 190 ILE B 195 1 O VAL B 191 N HIS B 83 SHEET 5 AA6 6 LEU B 169 LEU B 173 1 N LEU B 171 O ALA B 192 SHEET 6 AA6 6 LEU B 215 LEU B 217 1 O LEU B 217 N ILE B 172 SHEET 1 AA7 5 ARG C 7 TYR C 9 0 SHEET 2 AA7 5 GLN C 41 PHE C 45 1 O THR C 43 N ILE C 8 SHEET 3 AA7 5 LYS C 50 LYS C 60 -1 O PHE C 52 N LEU C 44 SHEET 4 AA7 5 GLN C 63 GLU C 73 -1 O ALA C 69 N THR C 53 SHEET 5 AA7 5 LEU C 19 GLU C 21 -1 N LEU C 20 O VAL C 66 SHEET 1 AA8 3 GLU C 151 LEU C 152 0 SHEET 2 AA8 3 CYS C 108 ILE C 113 1 N ILE C 109 O GLU C 151 SHEET 3 AA8 3 VAL C 156 TYR C 157 1 O VAL C 156 N ILE C 113 SHEET 1 AA9 6 GLU C 151 LEU C 152 0 SHEET 2 AA9 6 CYS C 108 ILE C 113 1 N ILE C 109 O GLU C 151 SHEET 3 AA9 6 LYS C 81 ALA C 87 1 N LEU C 84 O THR C 110 SHEET 4 AA9 6 ASP C 190 ILE C 195 1 O VAL C 191 N HIS C 83 SHEET 5 AA9 6 LEU C 169 LEU C 173 1 N LEU C 171 O ALA C 192 SHEET 6 AA9 6 LEU C 215 LEU C 217 1 O LEU C 215 N LYS C 170 SHEET 1 AB1 5 ARG D 7 TYR D 9 0 SHEET 2 AB1 5 GLN D 41 PHE D 45 1 O THR D 43 N ILE D 8 SHEET 3 AB1 5 LYS D 50 LYS D 60 -1 O PHE D 52 N LEU D 44 SHEET 4 AB1 5 GLN D 63 GLU D 73 -1 O GLN D 63 N LYS D 60 SHEET 5 AB1 5 LEU D 19 GLU D 21 -1 N LEU D 20 O VAL D 66 SHEET 1 AB2 3 GLU D 151 LEU D 152 0 SHEET 2 AB2 3 CYS D 108 ILE D 113 1 N ILE D 109 O GLU D 151 SHEET 3 AB2 3 VAL D 156 TYR D 157 1 O VAL D 156 N ILE D 113 SHEET 1 AB3 6 GLU D 151 LEU D 152 0 SHEET 2 AB3 6 CYS D 108 ILE D 113 1 N ILE D 109 O GLU D 151 SHEET 3 AB3 6 LYS D 81 ALA D 87 1 N LEU D 84 O THR D 110 SHEET 4 AB3 6 ASP D 190 ILE D 195 1 O LEU D 193 N ALA D 85 SHEET 5 AB3 6 LYS D 170 LEU D 173 1 N LEU D 171 O ALA D 192 SHEET 6 AB3 6 LEU D 215 LEU D 217 1 O LEU D 215 N LYS D 170 CISPEP 1 PRO A 188 PRO A 189 0 16.86 CISPEP 2 PRO B 188 PRO B 189 0 12.79 CISPEP 3 PRO C 188 PRO C 189 0 12.59 CISPEP 4 PRO D 188 PRO D 189 0 17.70 CRYST1 62.785 144.777 64.086 90.00 100.13 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015927 0.000000 0.002846 0.00000 SCALE2 0.000000 0.006907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015851 0.00000