HEADER TRANSFERASE 20-JUN-17 5O9Y TITLE CRYSTAL STRUCTURE OF SCGAS2 IN COMPLEX WITH COMPOUND 11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,3-BETA-GLUCANOSYLTRANSFERASE GAS2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOLIPID-ANCHORED SURFACE PROTEIN 2; COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 GENE: GAS2, YLR343W, L8300.5; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS ASPERGILLUS FUMIGATUS, AFGEL4, SCGAS2, TRANSGLYCOSYLASES, KEYWDS 2 GLUCANOSYLTRANSFERASES, CELL WALL REMODELING, FUNGAL CELL WALL, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.DELSO,J.VALERO-GONZALEZ,F.GOMOLLON-BEL,J.CASTRO-LOPEZ,W.FANG, AUTHOR 2 I.NAVRATILOVA,D.VAN AALTEN,T.TEJERO,P.MERINO,R.HURTADO-GUERRERO REVDAT 3 23-OCT-24 5O9Y 1 REMARK REVDAT 2 17-JAN-24 5O9Y 1 REMARK REVDAT 1 02-MAY-18 5O9Y 0 JRNL AUTH I.DELSO,J.VALERO-GONZALEZ,F.GOMOLLON-BEL,J.CASTRO-LOPEZ, JRNL AUTH 2 W.FANG,I.NAVRATILOVA,D.M.F.VAN AALTEN,T.TEJERO,P.MERINO, JRNL AUTH 3 R.HURTADO-GUERRERO JRNL TITL INHIBITORS AGAINST FUNGAL CELL WALL REMODELING ENZYMES. JRNL REF CHEMMEDCHEM V. 13 128 2018 JRNL REFN ESSN 1860-7187 JRNL PMID 29164827 JRNL DOI 10.1002/CMDC.201700720 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 150.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 68554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2135 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3452 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3423 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3583 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3262 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4837 ; 1.122 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7549 ; 0.913 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 5.851 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;31.520 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 580 ;11.862 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.594 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 519 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3963 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 806 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1711 ; 0.634 ; 2.448 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1710 ; 0.634 ; 2.447 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2130 ; 1.166 ; 3.660 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2131 ; 1.165 ; 3.661 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1872 ; 0.556 ; 2.534 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1860 ; 0.556 ; 2.512 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2690 ; 0.970 ; 3.723 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4272 ; 3.341 ;20.135 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4272 ; 3.341 ;20.135 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70765 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 150.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.71200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2W62 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3500, AMMONIUM SULFATE, BIS-TRIS REMARK 280 PH 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.03500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.03500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 PHE A 7 REMARK 465 TYR A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ILE A 11 REMARK 465 ILE A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 ILE A 15 REMARK 465 PHE A 16 REMARK 465 LEU A 17 REMARK 465 CYS A 18 REMARK 465 LEU A 19 REMARK 465 GLN A 20 REMARK 465 LEU A 21 REMARK 465 SER A 22 REMARK 465 HIS A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 VAL A 28 REMARK 465 GLU A 65 REMARK 465 GLU A 66 REMARK 465 GLU A 67 REMARK 465 LEU A 68 REMARK 465 SER A 69 REMARK 465 ASN A 70 REMARK 465 ALA A 71 REMARK 465 ASN A 72 REMARK 465 GLY A 73 REMARK 465 ALA A 74 REMARK 465 PHE A 75 REMARK 465 GLU A 76 REMARK 465 ALA A 356 REMARK 465 LYS A 357 REMARK 465 GLU A 358 REMARK 465 PRO A 359 REMARK 465 THR A 360 REMARK 465 GLU A 361 REMARK 465 VAL A 362 REMARK 465 GLU A 363 REMARK 465 SER A 364 REMARK 465 GLY A 405 REMARK 465 ALA A 406 REMARK 465 GLU A 407 REMARK 465 SER A 408 REMARK 465 PRO A 482 REMARK 465 LEU A 483 REMARK 465 THR A 484 REMARK 465 SER A 485 REMARK 465 GLU A 486 REMARK 465 SER A 487 REMARK 465 ILE A 488 REMARK 465 LYS A 490 REMARK 465 ASN A 491 REMARK 465 VAL A 492 REMARK 465 PHE A 493 REMARK 465 ASP A 494 REMARK 465 SER A 495 REMARK 465 ILE A 496 REMARK 465 ARG A 497 REMARK 465 ASN A 498 REMARK 465 ILE A 499 REMARK 465 THR A 500 REMARK 465 TYR A 501 REMARK 465 ASN A 502 REMARK 465 HIS A 503 REMARK 465 GLY A 504 REMARK 465 ASP A 505 REMARK 465 TYR A 506 REMARK 465 SER A 507 REMARK 465 LYS A 508 REMARK 465 SER A 509 REMARK 465 ASN A 510 REMARK 465 PRO A 511 REMARK 465 SER A 512 REMARK 465 ARG A 513 REMARK 465 SER A 514 REMARK 465 LYS A 515 REMARK 465 GLU A 516 REMARK 465 SER A 517 REMARK 465 LEU A 518 REMARK 465 ASN A 519 REMARK 465 VAL A 520 REMARK 465 LYS A 521 REMARK 465 TYR A 522 REMARK 465 PRO A 523 REMARK 465 SER A 524 REMARK 465 SER A 525 REMARK 465 GLU A 526 REMARK 465 GLU A 527 REMARK 465 ARG A 528 REMARK 465 GLU A 529 REMARK 465 ASN A 530 REMARK 465 ASP A 531 REMARK 465 GLY A 532 REMARK 465 THR A 533 REMARK 465 ILE A 534 REMARK 465 ALA A 535 REMARK 465 PHE A 536 REMARK 465 LYS A 537 REMARK 465 THR A 538 REMARK 465 SER A 539 REMARK 465 GLY A 540 REMARK 465 PHE A 541 REMARK 465 VAL A 542 REMARK 465 ILE A 543 REMARK 465 LEU A 544 REMARK 465 LEU A 545 REMARK 465 ILE A 546 REMARK 465 SER A 547 REMARK 465 MET A 548 REMARK 465 ILE A 549 REMARK 465 ALA A 550 REMARK 465 ALA A 551 REMARK 465 GLY A 552 REMARK 465 ILE A 553 REMARK 465 LEU A 554 REMARK 465 LEU A 555 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 412 CG CD OE1 OE2 REMARK 480 GLU A 413 CG CD OE1 OE2 REMARK 480 TYR A 414 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS A 458 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 412 CB GLU A 412 CG 0.118 REMARK 500 TYR A 414 CB TYR A 414 CG 0.224 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 414 CA - CB - CG ANGL. DEV. = -17.1 DEGREES REMARK 500 TYR A 414 CB - CG - CD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 TYR A 414 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 144 74.62 -153.67 REMARK 500 VAL A 177 -71.53 -71.54 REMARK 500 ASN A 183 34.31 -140.96 REMARK 500 ASN A 216 -158.93 -85.45 REMARK 500 SER A 302 33.19 -98.34 REMARK 500 VAL A 374 -60.97 -122.52 REMARK 500 LEU A 468 109.91 -161.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 981 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 982 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A 983 DISTANCE = 7.60 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9PN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 613 DBREF 5O9Y A 1 555 UNP Q06135 GAS2_YEAST 1 555 SEQRES 1 A 555 MET ASN LYS LYS GLN ASN PHE TYR ALA ALA ILE ILE VAL SEQRES 2 A 555 ALA ILE PHE LEU CYS LEU GLN LEU SER HIS GLY SER SER SEQRES 3 A 555 GLY VAL SER PHE GLU LYS THR PRO ALA ILE LYS ILE VAL SEQRES 4 A 555 GLY ASN LYS PHE PHE ASP SER GLU SER GLY GLU GLN PHE SEQRES 5 A 555 PHE ILE LYS GLY ILE ALA TYR GLN LEU GLN ARG SER GLU SEQRES 6 A 555 GLU GLU LEU SER ASN ALA ASN GLY ALA PHE GLU THR SER SEQRES 7 A 555 TYR ILE ASP ALA LEU ALA ASP PRO LYS ILE CYS LEU ARG SEQRES 8 A 555 ASP ILE PRO PHE LEU LYS MET LEU GLY VAL ASN THR LEU SEQRES 9 A 555 ARG VAL TYR ALA ILE ASP PRO THR LYS SER HIS ASP ILE SEQRES 10 A 555 CYS MET GLU ALA LEU SER ALA GLU GLY MET TYR VAL LEU SEQRES 11 A 555 LEU ASP LEU SER GLU PRO ASP ILE SER ILE ASN ARG GLU SEQRES 12 A 555 ASN PRO SER TRP ASP VAL HIS ILE PHE GLU ARG TYR LYS SEQRES 13 A 555 SER VAL ILE ASP ALA MET SER SER PHE PRO ASN LEU LEU SEQRES 14 A 555 GLY TYR PHE ALA GLY ASN GLU VAL THR ASN ASP HIS THR SEQRES 15 A 555 ASN THR PHE ALA SER PRO PHE VAL LYS ALA ALA ILE ARG SEQRES 16 A 555 ASP ALA LYS GLU TYR ILE SER HIS SER ASN HIS ARG LYS SEQRES 17 A 555 ILE PRO VAL GLY TYR SER THR ASN ASP ASP ALA MET THR SEQRES 18 A 555 ARG ASP ASN LEU ALA ARG TYR PHE VAL CYS GLY ASP VAL SEQRES 19 A 555 LYS ALA ASP PHE TYR GLY ILE ASN MET TYR GLU TRP CYS SEQRES 20 A 555 GLY TYR SER THR TYR GLY THR SER GLY TYR ARG GLU ARG SEQRES 21 A 555 THR LYS GLU PHE GLU GLY TYR PRO ILE PRO VAL PHE PHE SEQRES 22 A 555 SER GLU PHE GLY CYS ASN LEU VAL ARG PRO ARG PRO PHE SEQRES 23 A 555 THR GLU VAL SER ALA LEU TYR GLY ASN LYS MET SER SER SEQRES 24 A 555 VAL TRP SER GLY GLY LEU ALA TYR MET TYR PHE GLU GLU SEQRES 25 A 555 GLU ASN GLU TYR GLY VAL VAL LYS ILE ASN ASP ASN ASP SEQRES 26 A 555 GLY VAL ASP ILE LEU PRO ASP PHE LYS ASN LEU LYS LYS SEQRES 27 A 555 GLU PHE ALA LYS ALA ASP PRO LYS GLY ILE THR GLU GLU SEQRES 28 A 555 GLU TYR LEU THR ALA LYS GLU PRO THR GLU VAL GLU SER SEQRES 29 A 555 VAL GLU CYS PRO HIS ILE ALA VAL GLY VAL TRP GLU ALA SEQRES 30 A 555 ASN GLU LYS LEU PRO GLU THR PRO ASP ARG SER LYS CYS SEQRES 31 A 555 ALA CYS LEU ASP GLU ILE LEU PRO CYS GLU ILE VAL PRO SEQRES 32 A 555 PHE GLY ALA GLU SER GLY LYS TYR GLU GLU TYR PHE SER SEQRES 33 A 555 TYR LEU CYS SER LYS VAL ASP CYS SER ASP ILE LEU ALA SEQRES 34 A 555 ASN GLY LYS THR GLY GLU TYR GLY GLU PHE SER ASP CYS SEQRES 35 A 555 SER VAL GLU GLN LYS LEU SER LEU GLN LEU SER LYS LEU SEQRES 36 A 555 TYR CYS LYS ILE GLY ALA ASN ASP ARG HIS CYS PRO LEU SEQRES 37 A 555 ASN ASP LYS ASN VAL TYR PHE ASN LEU GLU SER LEU GLN SEQRES 38 A 555 PRO LEU THR SER GLU SER ILE CYS LYS ASN VAL PHE ASP SEQRES 39 A 555 SER ILE ARG ASN ILE THR TYR ASN HIS GLY ASP TYR SER SEQRES 40 A 555 LYS SER ASN PRO SER ARG SER LYS GLU SER LEU ASN VAL SEQRES 41 A 555 LYS TYR PRO SER SER GLU GLU ARG GLU ASN ASP GLY THR SEQRES 42 A 555 ILE ALA PHE LYS THR SER GLY PHE VAL ILE LEU LEU ILE SEQRES 43 A 555 SER MET ILE ALA ALA GLY ILE LEU LEU HET 9PN A 601 47 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET SO4 A 611 5 HET SO4 A 612 5 HET SO4 A 613 5 HETNAM 9PN (2~{R},3~{S},4~{S},5~{R},6~{S})-2-(HYDROXYMETHYL)-6- HETNAM 2 9PN [(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(HYDROXYMETHYL)-6- HETNAM 3 9PN [(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(HYDROXYMETHYL)-3, HETNAM 4 9PN 5-BIS(OXIDANYL)-6-[4-(3-PYRIDIN-1-IUM-1-YLPROPYL)-1,2, HETNAM 5 9PN 3-TRIAZOL-1-YL]OXAN-4-YL]OXY-3,5-BIS(OXIDANYL)OXAN-4- HETNAM 6 9PN YL]OXY-OXANE-3,4,5-TRIOL HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 9PN C28 H43 N4 O15 1+ FORMUL 3 EDO 9(C2 H6 O2) FORMUL 12 SO4 3(O4 S 2-) FORMUL 15 HOH *283(H2 O) HELIX 1 AA1 ASP A 81 ALA A 84 5 4 HELIX 2 AA2 ASP A 85 GLY A 100 1 16 HELIX 3 AA3 HIS A 115 GLU A 125 1 11 HELIX 4 AA4 ASP A 148 SER A 163 1 16 HELIX 5 AA5 ASN A 183 PHE A 185 5 3 HELIX 6 AA6 ALA A 186 SER A 204 1 19 HELIX 7 AA7 THR A 221 PHE A 229 1 9 HELIX 8 AA8 THR A 251 GLY A 256 1 6 HELIX 9 AA9 GLY A 256 GLU A 265 1 10 HELIX 10 AB1 THR A 287 TYR A 293 1 7 HELIX 11 AB2 GLY A 294 SER A 299 1 6 HELIX 12 AB3 PRO A 331 ALA A 343 1 13 HELIX 13 AB4 THR A 349 THR A 355 1 7 HELIX 14 AB5 ASP A 386 LEU A 397 1 12 HELIX 15 AB6 LYS A 410 VAL A 422 1 13 HELIX 16 AB7 CYS A 424 ILE A 427 5 4 HELIX 17 AB8 SER A 443 GLY A 460 1 18 HELIX 18 AB9 LEU A 477 GLN A 481 5 5 SHEET 1 AA1 2 ILE A 36 VAL A 39 0 SHEET 2 AA1 2 LYS A 42 ASP A 45 -1 O PHE A 44 N LYS A 37 SHEET 1 AA2 9 ILE A 54 ALA A 58 0 SHEET 2 AA2 9 THR A 103 VAL A 106 1 O THR A 103 N ILE A 57 SHEET 3 AA2 9 TYR A 128 ASP A 132 1 O LEU A 130 N LEU A 104 SHEET 4 AA2 9 LEU A 168 ASN A 175 1 O GLY A 170 N LEU A 131 SHEET 5 AA2 9 VAL A 211 THR A 215 1 O GLY A 212 N TYR A 171 SHEET 6 AA2 9 TYR A 239 MET A 243 1 O GLY A 240 N TYR A 213 SHEET 7 AA2 9 VAL A 271 PHE A 276 1 O GLU A 275 N MET A 243 SHEET 8 AA2 9 GLY A 303 ALA A 306 1 O LEU A 305 N PHE A 273 SHEET 9 AA2 9 ILE A 54 ALA A 58 1 N ALA A 58 O ALA A 306 SHEET 1 AA3 2 VAL A 319 ILE A 321 0 SHEET 2 AA3 2 VAL A 327 ILE A 329 -1 O ASP A 328 N LYS A 320 SHEET 1 AA4 2 CYS A 399 ILE A 401 0 SHEET 2 AA4 2 VAL A 473 PHE A 475 -1 O TYR A 474 N GLU A 400 SHEET 1 AA5 2 ALA A 429 ASN A 430 0 SHEET 2 AA5 2 GLU A 435 TYR A 436 -1 O GLU A 435 N ASN A 430 SSBOND 1 CYS A 89 CYS A 118 1555 1555 2.03 SSBOND 2 CYS A 231 CYS A 367 1555 1555 2.03 SSBOND 3 CYS A 247 CYS A 278 1555 1555 2.03 SSBOND 4 CYS A 390 CYS A 442 1555 1555 2.04 SSBOND 5 CYS A 392 CYS A 489 1555 1555 2.03 SSBOND 6 CYS A 399 CYS A 466 1555 1555 2.04 SSBOND 7 CYS A 419 CYS A 424 1555 1555 2.02 CISPEP 1 ARG A 282 PRO A 283 0 -10.13 CISPEP 2 TYR A 307 MET A 308 0 -4.42 SITE 1 AC1 24 GLN A 62 TYR A 107 SER A 134 GLU A 135 SITE 2 AC1 24 PRO A 136 SER A 139 ILE A 140 ASN A 141 SITE 3 AC1 24 ARG A 142 ASN A 175 VAL A 177 TYR A 244 SITE 4 AC1 24 GLU A 275 TYR A 307 TYR A 316 EDO A 604 SITE 5 AC1 24 HOH A 701 HOH A 718 HOH A 723 HOH A 729 SITE 6 AC1 24 HOH A 731 HOH A 739 HOH A 765 HOH A 841 SITE 1 AC2 6 ARG A 91 GLY A 326 VAL A 327 GLU A 478 SITE 2 AC2 6 GLN A 481 HOH A 704 SITE 1 AC3 4 PHE A 95 MET A 98 GLU A 478 HOH A 704 SITE 1 AC4 6 PRO A 136 ASP A 137 SER A 139 ASN A 141 SITE 2 AC4 6 9PN A 601 HOH A 729 SITE 1 AC5 2 ASN A 141 ASN A 144 SITE 1 AC6 1 TYR A 267 SITE 1 AC7 3 GLU A 311 GLU A 313 LYS A 320 SITE 1 AC8 2 GLU A 383 THR A 384 SITE 1 AC9 8 GLU A 383 TYR A 436 GLY A 437 GLU A 438 SITE 2 AC9 8 SER A 440 ASP A 441 HOH A 737 HOH A 865 SITE 1 AD1 5 ASP A 160 SO4 A 611 HOH A 709 HOH A 733 SITE 2 AD1 5 HOH A 915 SITE 1 AD2 8 SER A 114 HIS A 115 ASP A 116 PHE A 165 SITE 2 AD2 8 LYS A 471 EDO A 610 HOH A 706 HOH A 890 SITE 1 AD3 6 SER A 164 HIS A 206 SO4 A 613 HOH A 709 SITE 2 AD3 6 HOH A 888 HOH A 910 SITE 1 AD4 4 ASN A 205 PRO A 283 PRO A 331 SO4 A 612 CRYST1 49.920 70.380 150.070 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006664 0.00000