HEADER PROTEIN BINDING 23-JUN-17 5OAO TITLE SOLUTION STRUCTURE OF THE COMPLEXED RCD1-RST COMPND MOL_ID: 1; COMPND 2 MOLECULE: RST DOMAIN FROM THE RADICAL-INDUCED CELL DEATH1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN RADICAL-INDUCED CELL DEATH 1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: COMPLEXED WITH THE PEPTIDE DREB2A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RCD1, ATP8, CEO1, AT1G32230, F3C3.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-ALPHA HAIRPIN, HUB, L-GLOVE, TRANSCRIPTION FACTOR BINDING, KEYWDS 2 PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.BUGGE,L.STABY,K.SKRIVER,B.B.KRAGELUND REVDAT 5 14-JUN-23 5OAO 1 REMARK REVDAT 4 08-MAY-19 5OAO 1 REMARK REVDAT 3 09-MAY-18 5OAO 1 JRNL REVDAT 2 25-APR-18 5OAO 1 JRNL REVDAT 1 18-APR-18 5OAO 0 JRNL AUTH K.BUGGE,L.STABY,K.R.KEMPLEN,C.O'SHEA,S.K.BENDSEN,M.K.JENSEN, JRNL AUTH 2 J.G.OLSEN,K.SKRIVER,B.B.KRAGELUND JRNL TITL STRUCTURE OF RADICAL-INDUCED CELL DEATH1 HUB DOMAIN REVEALS JRNL TITL 2 A COMMON ALPHA ALPHA-SCAFFOLD FOR DISORDER IN JRNL TITL 3 TRANSCRIPTIONAL NETWORKS. JRNL REF STRUCTURE V. 26 734 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29657132 JRNL DOI 10.1016/J.STR.2018.03.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EEFX REMARK 4 REMARK 4 5OAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200004335. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 200 UM [U-13C; U-15N] RCD1-RST, REMARK 210 200 UM DREB2A, 0.2 MG/ML SODIUM REMARK 210 AZIDE, 0.7 MM DSS, 90% H2O/10% REMARK 210 D2O; 150 UM [U-15N] RCD1-RST, REMARK 210 150 UM DREB2A, 0.2 MG/ML SODIUM REMARK 210 AZIDE, 0.7 MM DSS, 90% H2O/10% REMARK 210 D2O; 200 UM [U-13C; U-15N] RCD1- REMARK 210 RST, 200 UM [U-13C; U-15N] REMARK 210 DREB2A, 0.2 MG/ML SODIUM AZIDE, REMARK 210 0.7 MM DSS, 90% H2O/10% D2O; 300 REMARK 210 UM [U-15N] RCD1-RST, 900 UM REMARK 210 DREB2A, 50 MG/ML C12E5, 0.2 MG/ REMARK 210 ML SODIUM AZIDE, 0.7 MM DSS, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D HNHA; 3D 1H-15N TOCSY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 2D 1H-15N REMARK 210 IPAP-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS, PROCHECK / REMARK 210 PROCHECK-NMR, VNMR, TOPSPIN, REMARK 210 NMRPIPE, TALOS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 568 57.43 -96.57 REMARK 500 3 ASN A 568 -79.63 -83.64 REMARK 500 6 ARG A 502 77.45 -156.84 REMARK 500 6 PRO A 511 34.61 -83.23 REMARK 500 7 ASN A 568 59.87 -93.83 REMARK 500 7 GLN A 569 -62.15 -107.80 REMARK 500 9 PRO A 509 -63.54 -92.71 REMARK 500 10 ARG A 502 -60.29 -139.09 REMARK 500 12 TRP A 507 -142.97 61.99 REMARK 500 12 MET A 508 82.42 -153.92 REMARK 500 13 ASN A 568 51.44 -102.41 REMARK 500 14 THR A 501 -86.88 -129.69 REMARK 500 15 THR A 501 -55.34 -120.07 REMARK 500 15 SER A 505 65.70 60.29 REMARK 500 15 ASN A 568 70.23 -104.71 REMARK 500 17 PRO A 511 35.45 -86.24 REMARK 500 19 ASN A 568 56.41 -96.39 REMARK 500 20 ASN A 568 56.72 -98.33 REMARK 500 20 GLN A 569 -60.93 -96.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34151 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE COMPLEXED RCD1-RST DBREF 5OAO A 500 572 UNP Q8RY59 RCD1_ARATH 500 572 SEQRES 1 A 73 THR THR ARG PRO LYS SER PRO TRP MET PRO PHE PRO THR SEQRES 2 A 73 LEU PHE ALA ALA ILE SER HIS LYS VAL ALA GLU ASN ASP SEQRES 3 A 73 MET LEU LEU ILE ASN ALA ASP TYR GLN GLN LEU ARG ASP SEQRES 4 A 73 LYS LYS MET THR ARG ALA GLU PHE VAL ARG LYS LEU ARG SEQRES 5 A 73 VAL ILE VAL GLY ASP ASP LEU LEU ARG SER THR ILE THR SEQRES 6 A 73 THR LEU GLN ASN GLN PRO LYS SER HELIX 1 AA1 PRO A 511 HIS A 519 1 9 HELIX 2 AA2 ALA A 522 ASP A 538 1 17 HELIX 3 AA3 THR A 542 GLY A 555 1 14 HELIX 4 AA4 GLY A 555 ASN A 568 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1