data_5OC4 # _entry.id 5OC4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5OC4 pdb_00005oc4 10.2210/pdb5oc4/pdb WWPDB D_1200005552 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-12-26 2 'Structure model' 1 1 2019-01-16 3 'Structure model' 1 2 2019-04-17 4 'Structure model' 1 3 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' pdbx_database_proc 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5OC4 _pdbx_database_status.recvd_initial_deposition_date 2017-06-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bou-nader, C.' 1 ? 'Pecqueur, L.' 2 ? 'Hamdane, D.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 3117 _citation.page_last 3126 _citation.title 'Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky1302 _citation.pdbx_database_id_PubMed 30605527 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bou-Nader, C.' 1 ? primary 'Barraud, P.' 2 ? primary 'Pecqueur, L.' 3 ? primary 'Perez, J.' 4 ? primary 'Velours, C.' 5 ? primary 'Shepard, W.' 6 ? primary 'Fontecave, M.' 7 ? primary 'Tisne, C.' 8 ? primary 'Hamdane, D.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'tRNA-dihydrouridine(20) synthase [NAD(P)+]-like' 13425.269 1 1.3.1.- 'R361A, R362A' ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 non-polymer syn 'CACODYLATE ION' 136.989 1 ? ? ? ? 5 water nat water 18.015 144 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Dihydrouridine synthase 2,Up-regulated in lung cancer protein 8,URLC8,tRNA-dihydrouridine synthase 2-like,hDUS2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TSEQTGEPAEDTSGVIKMAVKFDAAAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDK SKKLAEQAAAIVCLRSQGLPEGRLGEESPSLHKHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;TSEQTGEPAEDTSGVIKMAVKFDAAAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDK SKKLAEQAAAIVCLRSQGLPEGRLGEESPSLHKHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 GLYCEROL GOL 4 'CACODYLATE ION' CAC 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 SER n 1 3 GLU n 1 4 GLN n 1 5 THR n 1 6 GLY n 1 7 GLU n 1 8 PRO n 1 9 ALA n 1 10 GLU n 1 11 ASP n 1 12 THR n 1 13 SER n 1 14 GLY n 1 15 VAL n 1 16 ILE n 1 17 LYS n 1 18 MET n 1 19 ALA n 1 20 VAL n 1 21 LYS n 1 22 PHE n 1 23 ASP n 1 24 ALA n 1 25 ALA n 1 26 ALA n 1 27 TYR n 1 28 PRO n 1 29 ALA n 1 30 GLN n 1 31 ILE n 1 32 THR n 1 33 PRO n 1 34 LYS n 1 35 MET n 1 36 CYS n 1 37 LEU n 1 38 LEU n 1 39 GLU n 1 40 TRP n 1 41 CYS n 1 42 ARG n 1 43 ARG n 1 44 GLU n 1 45 LYS n 1 46 LEU n 1 47 ALA n 1 48 GLN n 1 49 PRO n 1 50 VAL n 1 51 TYR n 1 52 GLU n 1 53 THR n 1 54 VAL n 1 55 GLN n 1 56 ARG n 1 57 PRO n 1 58 LEU n 1 59 ASP n 1 60 ARG n 1 61 LEU n 1 62 PHE n 1 63 SER n 1 64 SER n 1 65 ILE n 1 66 VAL n 1 67 THR n 1 68 VAL n 1 69 ALA n 1 70 GLU n 1 71 GLN n 1 72 LYS n 1 73 TYR n 1 74 GLN n 1 75 SER n 1 76 THR n 1 77 LEU n 1 78 TRP n 1 79 ASP n 1 80 LYS n 1 81 SER n 1 82 LYS n 1 83 LYS n 1 84 LEU n 1 85 ALA n 1 86 GLU n 1 87 GLN n 1 88 ALA n 1 89 ALA n 1 90 ALA n 1 91 ILE n 1 92 VAL n 1 93 CYS n 1 94 LEU n 1 95 ARG n 1 96 SER n 1 97 GLN n 1 98 GLY n 1 99 LEU n 1 100 PRO n 1 101 GLU n 1 102 GLY n 1 103 ARG n 1 104 LEU n 1 105 GLY n 1 106 GLU n 1 107 GLU n 1 108 SER n 1 109 PRO n 1 110 SER n 1 111 LEU n 1 112 HIS n 1 113 LYS n 1 114 HIS n 1 115 HIS n 1 116 HIS n 1 117 HIS n 1 118 HIS n 1 119 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 119 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DUS2, DUS2L' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector pET11D _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 338 ? ? ? A . n A 1 2 SER 2 339 ? ? ? A . n A 1 3 GLU 3 340 ? ? ? A . n A 1 4 GLN 4 341 ? ? ? A . n A 1 5 THR 5 342 ? ? ? A . n A 1 6 GLY 6 343 ? ? ? A . n A 1 7 GLU 7 344 ? ? ? A . n A 1 8 PRO 8 345 ? ? ? A . n A 1 9 ALA 9 346 ? ? ? A . n A 1 10 GLU 10 347 347 GLU GLU A . n A 1 11 ASP 11 348 348 ASP ASP A . n A 1 12 THR 12 349 349 THR THR A . n A 1 13 SER 13 350 350 SER SER A . n A 1 14 GLY 14 351 351 GLY GLY A . n A 1 15 VAL 15 352 352 VAL VAL A . n A 1 16 ILE 16 353 353 ILE ILE A . n A 1 17 LYS 17 354 354 LYS LYS A . n A 1 18 MET 18 355 355 MET MET A . n A 1 19 ALA 19 356 356 ALA ALA A . n A 1 20 VAL 20 357 357 VAL VAL A . n A 1 21 LYS 21 358 358 LYS LYS A . n A 1 22 PHE 22 359 359 PHE PHE A . n A 1 23 ASP 23 360 360 ASP ASP A . n A 1 24 ALA 24 361 361 ALA ALA A . n A 1 25 ALA 25 362 362 ALA ALA A . n A 1 26 ALA 26 363 363 ALA ALA A . n A 1 27 TYR 27 364 364 TYR TYR A . n A 1 28 PRO 28 365 365 PRO PRO A . n A 1 29 ALA 29 366 366 ALA ALA A . n A 1 30 GLN 30 367 367 GLN GLN A . n A 1 31 ILE 31 368 368 ILE ILE A . n A 1 32 THR 32 369 369 THR THR A . n A 1 33 PRO 33 370 370 PRO PRO A . n A 1 34 LYS 34 371 371 LYS LYS A . n A 1 35 MET 35 372 372 MET MET A . n A 1 36 CYS 36 373 373 CYS CYS A . n A 1 37 LEU 37 374 374 LEU LEU A . n A 1 38 LEU 38 375 375 LEU LEU A . n A 1 39 GLU 39 376 376 GLU GLU A . n A 1 40 TRP 40 377 377 TRP TRP A . n A 1 41 CYS 41 378 378 CYS CYS A . n A 1 42 ARG 42 379 379 ARG ARG A . n A 1 43 ARG 43 380 380 ARG ARG A . n A 1 44 GLU 44 381 381 GLU GLU A . n A 1 45 LYS 45 382 382 LYS LYS A . n A 1 46 LEU 46 383 383 LEU LEU A . n A 1 47 ALA 47 384 384 ALA ALA A . n A 1 48 GLN 48 385 385 GLN GLN A . n A 1 49 PRO 49 386 386 PRO PRO A . n A 1 50 VAL 50 387 387 VAL VAL A . n A 1 51 TYR 51 388 388 TYR TYR A . n A 1 52 GLU 52 389 389 GLU GLU A . n A 1 53 THR 53 390 390 THR THR A . n A 1 54 VAL 54 391 391 VAL VAL A . n A 1 55 GLN 55 392 392 GLN GLN A . n A 1 56 ARG 56 393 393 ARG ARG A . n A 1 57 PRO 57 394 394 PRO PRO A . n A 1 58 LEU 58 395 395 LEU LEU A . n A 1 59 ASP 59 396 396 ASP ASP A . n A 1 60 ARG 60 397 397 ARG ARG A . n A 1 61 LEU 61 398 398 LEU LEU A . n A 1 62 PHE 62 399 399 PHE PHE A . n A 1 63 SER 63 400 400 SER SER A . n A 1 64 SER 64 401 401 SER SER A . n A 1 65 ILE 65 402 402 ILE ILE A . n A 1 66 VAL 66 403 403 VAL VAL A . n A 1 67 THR 67 404 404 THR THR A . n A 1 68 VAL 68 405 405 VAL VAL A . n A 1 69 ALA 69 406 406 ALA ALA A . n A 1 70 GLU 70 407 407 GLU GLU A . n A 1 71 GLN 71 408 408 GLN GLN A . n A 1 72 LYS 72 409 409 LYS LYS A . n A 1 73 TYR 73 410 410 TYR TYR A . n A 1 74 GLN 74 411 411 GLN GLN A . n A 1 75 SER 75 412 412 SER SER A . n A 1 76 THR 76 413 413 THR THR A . n A 1 77 LEU 77 414 414 LEU LEU A . n A 1 78 TRP 78 415 415 TRP TRP A . n A 1 79 ASP 79 416 416 ASP ASP A . n A 1 80 LYS 80 417 417 LYS LYS A . n A 1 81 SER 81 418 418 SER SER A . n A 1 82 LYS 82 419 419 LYS LYS A . n A 1 83 LYS 83 420 420 LYS LYS A . n A 1 84 LEU 84 421 421 LEU LEU A . n A 1 85 ALA 85 422 422 ALA ALA A . n A 1 86 GLU 86 423 423 GLU GLU A . n A 1 87 GLN 87 424 424 GLN GLN A . n A 1 88 ALA 88 425 425 ALA ALA A . n A 1 89 ALA 89 426 426 ALA ALA A . n A 1 90 ALA 90 427 427 ALA ALA A . n A 1 91 ILE 91 428 428 ILE ILE A . n A 1 92 VAL 92 429 429 VAL VAL A . n A 1 93 CYS 93 430 430 CYS CYS A . n A 1 94 LEU 94 431 431 LEU LEU A . n A 1 95 ARG 95 432 432 ARG ARG A . n A 1 96 SER 96 433 433 SER SER A . n A 1 97 GLN 97 434 434 GLN GLN A . n A 1 98 GLY 98 435 435 GLY GLY A . n A 1 99 LEU 99 436 436 LEU LEU A . n A 1 100 PRO 100 437 437 PRO PRO A . n A 1 101 GLU 101 438 438 GLU GLU A . n A 1 102 GLY 102 439 439 GLY GLY A . n A 1 103 ARG 103 440 440 ARG ARG A . n A 1 104 LEU 104 441 441 LEU LEU A . n A 1 105 GLY 105 442 442 GLY GLY A . n A 1 106 GLU 106 443 ? ? ? A . n A 1 107 GLU 107 444 ? ? ? A . n A 1 108 SER 108 445 ? ? ? A . n A 1 109 PRO 109 446 ? ? ? A . n A 1 110 SER 110 447 ? ? ? A . n A 1 111 LEU 111 448 ? ? ? A . n A 1 112 HIS 112 449 ? ? ? A . n A 1 113 LYS 113 450 ? ? ? A . n A 1 114 HIS 114 451 ? ? ? A . n A 1 115 HIS 115 452 ? ? ? A . n A 1 116 HIS 116 453 ? ? ? A . n A 1 117 HIS 117 454 ? ? ? A . n A 1 118 HIS 118 455 ? ? ? A . n A 1 119 HIS 119 456 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 501 1 CL CL A . C 3 GOL 1 502 1 GOL GOL A . D 3 GOL 1 503 2 GOL GOL A . E 4 CAC 1 504 1 CAC CAC A . F 5 HOH 1 601 48 HOH HOH A . F 5 HOH 2 602 77 HOH HOH A . F 5 HOH 3 603 4 HOH HOH A . F 5 HOH 4 604 96 HOH HOH A . F 5 HOH 5 605 6 HOH HOH A . F 5 HOH 6 606 36 HOH HOH A . F 5 HOH 7 607 229 HOH HOH A . F 5 HOH 8 608 23 HOH HOH A . F 5 HOH 9 609 17 HOH HOH A . F 5 HOH 10 610 166 HOH HOH A . F 5 HOH 11 611 19 HOH HOH A . F 5 HOH 12 612 12 HOH HOH A . F 5 HOH 13 613 15 HOH HOH A . F 5 HOH 14 614 198 HOH HOH A . F 5 HOH 15 615 25 HOH HOH A . F 5 HOH 16 616 13 HOH HOH A . F 5 HOH 17 617 44 HOH HOH A . F 5 HOH 18 618 54 HOH HOH A . F 5 HOH 19 619 16 HOH HOH A . F 5 HOH 20 620 38 HOH HOH A . F 5 HOH 21 621 112 HOH HOH A . F 5 HOH 22 622 20 HOH HOH A . F 5 HOH 23 623 39 HOH HOH A . F 5 HOH 24 624 41 HOH HOH A . F 5 HOH 25 625 167 HOH HOH A . F 5 HOH 26 626 51 HOH HOH A . F 5 HOH 27 627 88 HOH HOH A . F 5 HOH 28 628 24 HOH HOH A . F 5 HOH 29 629 164 HOH HOH A . F 5 HOH 30 630 79 HOH HOH A . F 5 HOH 31 631 177 HOH HOH A . F 5 HOH 32 632 49 HOH HOH A . F 5 HOH 33 633 78 HOH HOH A . F 5 HOH 34 634 188 HOH HOH A . F 5 HOH 35 635 42 HOH HOH A . F 5 HOH 36 636 131 HOH HOH A . F 5 HOH 37 637 14 HOH HOH A . F 5 HOH 38 638 1 HOH HOH A . F 5 HOH 39 639 60 HOH HOH A . F 5 HOH 40 640 3 HOH HOH A . F 5 HOH 41 641 178 HOH HOH A . F 5 HOH 42 642 66 HOH HOH A . F 5 HOH 43 643 90 HOH HOH A . F 5 HOH 44 644 2 HOH HOH A . F 5 HOH 45 645 155 HOH HOH A . F 5 HOH 46 646 98 HOH HOH A . F 5 HOH 47 647 7 HOH HOH A . F 5 HOH 48 648 32 HOH HOH A . F 5 HOH 49 649 211 HOH HOH A . F 5 HOH 50 650 10 HOH HOH A . F 5 HOH 51 651 161 HOH HOH A . F 5 HOH 52 652 63 HOH HOH A . F 5 HOH 53 653 18 HOH HOH A . F 5 HOH 54 654 184 HOH HOH A . F 5 HOH 55 655 27 HOH HOH A . F 5 HOH 56 656 218 HOH HOH A . F 5 HOH 57 657 108 HOH HOH A . F 5 HOH 58 658 29 HOH HOH A . F 5 HOH 59 659 181 HOH HOH A . F 5 HOH 60 660 97 HOH HOH A . F 5 HOH 61 661 120 HOH HOH A . F 5 HOH 62 662 225 HOH HOH A . F 5 HOH 63 663 55 HOH HOH A . F 5 HOH 64 664 28 HOH HOH A . F 5 HOH 65 665 33 HOH HOH A . F 5 HOH 66 666 204 HOH HOH A . F 5 HOH 67 667 31 HOH HOH A . F 5 HOH 68 668 5 HOH HOH A . F 5 HOH 69 669 157 HOH HOH A . F 5 HOH 70 670 22 HOH HOH A . F 5 HOH 71 671 228 HOH HOH A . F 5 HOH 72 672 226 HOH HOH A . F 5 HOH 73 673 35 HOH HOH A . F 5 HOH 74 674 11 HOH HOH A . F 5 HOH 75 675 195 HOH HOH A . F 5 HOH 76 676 103 HOH HOH A . F 5 HOH 77 677 165 HOH HOH A . F 5 HOH 78 678 171 HOH HOH A . F 5 HOH 79 679 94 HOH HOH A . F 5 HOH 80 680 21 HOH HOH A . F 5 HOH 81 681 185 HOH HOH A . F 5 HOH 82 682 180 HOH HOH A . F 5 HOH 83 683 193 HOH HOH A . F 5 HOH 84 684 179 HOH HOH A . F 5 HOH 85 685 59 HOH HOH A . F 5 HOH 86 686 159 HOH HOH A . F 5 HOH 87 687 224 HOH HOH A . F 5 HOH 88 688 227 HOH HOH A . F 5 HOH 89 689 200 HOH HOH A . F 5 HOH 90 690 191 HOH HOH A . F 5 HOH 91 691 92 HOH HOH A . F 5 HOH 92 692 168 HOH HOH A . F 5 HOH 93 693 194 HOH HOH A . F 5 HOH 94 694 183 HOH HOH A . F 5 HOH 95 695 67 HOH HOH A . F 5 HOH 96 696 163 HOH HOH A . F 5 HOH 97 697 217 HOH HOH A . F 5 HOH 98 698 132 HOH HOH A . F 5 HOH 99 699 153 HOH HOH A . F 5 HOH 100 700 203 HOH HOH A . F 5 HOH 101 701 214 HOH HOH A . F 5 HOH 102 702 206 HOH HOH A . F 5 HOH 103 703 182 HOH HOH A . F 5 HOH 104 704 99 HOH HOH A . F 5 HOH 105 705 118 HOH HOH A . F 5 HOH 106 706 64 HOH HOH A . F 5 HOH 107 707 65 HOH HOH A . F 5 HOH 108 708 71 HOH HOH A . F 5 HOH 109 709 170 HOH HOH A . F 5 HOH 110 710 207 HOH HOH A . F 5 HOH 111 711 111 HOH HOH A . F 5 HOH 112 712 209 HOH HOH A . F 5 HOH 113 713 173 HOH HOH A . F 5 HOH 114 714 202 HOH HOH A . F 5 HOH 115 715 68 HOH HOH A . F 5 HOH 116 716 26 HOH HOH A . F 5 HOH 117 717 223 HOH HOH A . F 5 HOH 118 718 201 HOH HOH A . F 5 HOH 119 719 95 HOH HOH A . F 5 HOH 120 720 47 HOH HOH A . F 5 HOH 121 721 142 HOH HOH A . F 5 HOH 122 722 176 HOH HOH A . F 5 HOH 123 723 43 HOH HOH A . F 5 HOH 124 724 172 HOH HOH A . F 5 HOH 125 725 162 HOH HOH A . F 5 HOH 126 726 216 HOH HOH A . F 5 HOH 127 727 205 HOH HOH A . F 5 HOH 128 728 212 HOH HOH A . F 5 HOH 129 729 222 HOH HOH A . F 5 HOH 130 730 34 HOH HOH A . F 5 HOH 131 731 143 HOH HOH A . F 5 HOH 132 732 221 HOH HOH A . F 5 HOH 133 733 215 HOH HOH A . F 5 HOH 134 734 160 HOH HOH A . F 5 HOH 135 735 169 HOH HOH A . F 5 HOH 136 736 187 HOH HOH A . F 5 HOH 137 737 219 HOH HOH A . F 5 HOH 138 738 56 HOH HOH A . F 5 HOH 139 739 192 HOH HOH A . F 5 HOH 140 740 208 HOH HOH A . F 5 HOH 141 741 190 HOH HOH A . F 5 HOH 142 742 210 HOH HOH A . F 5 HOH 143 743 186 HOH HOH A . F 5 HOH 144 744 220 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 347 ? CG ? A GLU 10 CG 2 1 Y 1 A GLU 347 ? CD ? A GLU 10 CD 3 1 Y 1 A GLU 347 ? OE1 ? A GLU 10 OE1 4 1 Y 1 A GLU 347 ? OE2 ? A GLU 10 OE2 5 1 Y 1 A GLN 367 ? CG ? A GLN 30 CG 6 1 Y 1 A GLN 367 ? CD ? A GLN 30 CD 7 1 Y 1 A GLN 367 ? OE1 ? A GLN 30 OE1 8 1 Y 1 A GLN 367 ? NE2 ? A GLN 30 NE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.3 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 5OC4 _cell.length_a 83.940 _cell.length_b 83.940 _cell.length_c 56.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OC4 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5OC4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;22% PEG 8K 100 mM sodium cacodylate ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-12-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98011 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98011 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 2' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate 31.71 _reflns.entry_id 5OC4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 44.52 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16219 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 91.02 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.6 _reflns.pdbx_Rmerge_I_obs 0.2169 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.00 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.992 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.02 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 625 _reflns_shell.percent_possible_all 39.01 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.26 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5OC4 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16049 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.97 _refine.ls_d_res_high 1.71 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.196 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free 0.215 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.260 _refine.ls_number_reflns_R_free 1326 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.B_iso_mean 37.02 _refine.aniso_B[1][1] -1.64300 _refine.aniso_B[2][2] -1.64300 _refine.aniso_B[3][3] 3.28610 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 4WFT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.091 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.088 _refine.pdbx_overall_SU_R_Blow_DPI 0.098 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.093 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 5OC4 _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 746 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 908 _refine_hist.d_res_high 1.71 _refine_hist.d_res_low 41.97 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 794 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.06 ? 2.00 1071 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 286 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes ? ? 5.00 129 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 794 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 3.26 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 14.85 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 103 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1069 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.71 _refine_ls_shell.d_res_low 1.82 _refine_ls_shell.number_reflns_R_work 2643 _refine_ls_shell.R_factor_R_work 0.2247 _refine_ls_shell.percent_reflns_obs 99.52 _refine_ls_shell.R_factor_R_free 0.2452 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 9.30 _refine_ls_shell.number_reflns_R_free 271 _refine_ls_shell.number_reflns_all 2914 _refine_ls_shell.R_factor_all 0.2266 # _struct.entry_id 5OC4 _struct.title 'Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD R361A-R362A mutant' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5OC4 _struct_keywords.text 'double-stranded RNA-binding domain, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DUS2L_HUMAN _struct_ref.pdbx_db_accession Q9NX74 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TSEQTGEPAEDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDK SKKLAEQAAAIVCLRSQGLPEGRLGEESPSLHK ; _struct_ref.pdbx_align_begin 338 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5OC4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NX74 _struct_ref_seq.db_align_beg 338 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 450 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 338 _struct_ref_seq.pdbx_auth_seq_align_end 450 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5OC4 ALA A 24 ? UNP Q9NX74 ARG 361 'engineered mutation' 361 1 1 5OC4 ALA A 25 ? UNP Q9NX74 ARG 362 'engineered mutation' 362 2 1 5OC4 HIS A 114 ? UNP Q9NX74 ? ? 'expression tag' 451 3 1 5OC4 HIS A 115 ? UNP Q9NX74 ? ? 'expression tag' 452 4 1 5OC4 HIS A 116 ? UNP Q9NX74 ? ? 'expression tag' 453 5 1 5OC4 HIS A 117 ? UNP Q9NX74 ? ? 'expression tag' 454 6 1 5OC4 HIS A 118 ? UNP Q9NX74 ? ? 'expression tag' 455 7 1 5OC4 HIS A 119 ? UNP Q9NX74 ? ? 'expression tag' 456 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 710 ? 1 MORE -6 ? 1 'SSA (A^2)' 6160 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 23 ? TYR A 27 ? ASP A 360 TYR A 364 5 ? 5 HELX_P HELX_P2 AA2 THR A 32 ? GLU A 44 ? THR A 369 GLU A 381 1 ? 13 HELX_P HELX_P3 AA3 PRO A 57 ? ARG A 60 ? PRO A 394 ARG A 397 5 ? 4 HELX_P HELX_P4 AA4 SER A 81 ? GLN A 97 ? SER A 418 GLN A 434 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 15 ? MET A 18 ? VAL A 352 MET A 355 AA1 2 GLN A 71 ? SER A 75 ? GLN A 408 SER A 412 AA1 3 LEU A 61 ? VAL A 68 ? LEU A 398 VAL A 405 AA1 4 VAL A 50 ? ARG A 56 ? VAL A 387 ARG A 393 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 16 ? N ILE A 353 O LYS A 72 ? O LYS A 409 AA1 2 3 O TYR A 73 ? O TYR A 410 N VAL A 66 ? N VAL A 403 AA1 3 4 O SER A 63 ? O SER A 400 N VAL A 54 ? N VAL A 391 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 501 ? 3 'binding site for residue CL A 501' AC2 Software A GOL 502 ? 8 'binding site for residue GOL A 502' AC3 Software A GOL 503 ? 10 'binding site for residue GOL A 503' AC4 Software A CAC 504 ? 7 'binding site for residue CAC A 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLU A 101 ? GLU A 438 . ? 1_555 ? 2 AC1 3 GLY A 102 ? GLY A 439 . ? 1_555 ? 3 AC1 3 ARG A 103 ? ARG A 440 . ? 1_555 ? 4 AC2 8 LYS A 17 ? LYS A 354 . ? 1_555 ? 5 AC2 8 SER A 63 ? SER A 400 . ? 1_555 ? 6 AC2 8 SER A 75 ? SER A 412 . ? 1_555 ? 7 AC2 8 THR A 76 ? THR A 413 . ? 1_555 ? 8 AC2 8 LEU A 77 ? LEU A 414 . ? 1_555 ? 9 AC2 8 TRP A 78 ? TRP A 415 . ? 1_555 ? 10 AC2 8 GOL D . ? GOL A 503 . ? 9_554 ? 11 AC2 8 HOH F . ? HOH A 627 . ? 1_555 ? 12 AC3 10 ILE A 16 ? ILE A 353 . ? 1_555 ? 13 AC3 10 VAL A 54 ? VAL A 391 . ? 5_555 ? 14 AC3 10 GLN A 74 ? GLN A 411 . ? 5_555 ? 15 AC3 10 SER A 96 ? SER A 433 . ? 1_555 ? 16 AC3 10 GLN A 97 ? GLN A 434 . ? 1_555 ? 17 AC3 10 GOL C . ? GOL A 502 . ? 5_555 ? 18 AC3 10 HOH F . ? HOH A 601 . ? 1_555 ? 19 AC3 10 HOH F . ? HOH A 606 . ? 1_555 ? 20 AC3 10 HOH F . ? HOH A 617 . ? 1_555 ? 21 AC3 10 HOH F . ? HOH A 627 . ? 5_555 ? 22 AC4 7 TYR A 51 ? TYR A 388 . ? 1_555 ? 23 AC4 7 GLU A 52 ? GLU A 389 . ? 1_555 ? 24 AC4 7 THR A 53 ? THR A 390 . ? 1_555 ? 25 AC4 7 LYS A 82 ? LYS A 419 . ? 1_555 ? 26 AC4 7 HOH F . ? HOH A 610 . ? 1_555 ? 27 AC4 7 HOH F . ? HOH A 618 . ? 1_555 ? 28 AC4 7 HOH F . ? HOH A 625 . ? 1_555 ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 407 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 68.60 _pdbx_validate_torsion.psi -0.87 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 744 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.10 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 338 ? A THR 1 2 1 Y 1 A SER 339 ? A SER 2 3 1 Y 1 A GLU 340 ? A GLU 3 4 1 Y 1 A GLN 341 ? A GLN 4 5 1 Y 1 A THR 342 ? A THR 5 6 1 Y 1 A GLY 343 ? A GLY 6 7 1 Y 1 A GLU 344 ? A GLU 7 8 1 Y 1 A PRO 345 ? A PRO 8 9 1 Y 1 A ALA 346 ? A ALA 9 10 1 Y 1 A GLU 443 ? A GLU 106 11 1 Y 1 A GLU 444 ? A GLU 107 12 1 Y 1 A SER 445 ? A SER 108 13 1 Y 1 A PRO 446 ? A PRO 109 14 1 Y 1 A SER 447 ? A SER 110 15 1 Y 1 A LEU 448 ? A LEU 111 16 1 Y 1 A HIS 449 ? A HIS 112 17 1 Y 1 A LYS 450 ? A LYS 113 18 1 Y 1 A HIS 451 ? A HIS 114 19 1 Y 1 A HIS 452 ? A HIS 115 20 1 Y 1 A HIS 453 ? A HIS 116 21 1 Y 1 A HIS 454 ? A HIS 117 22 1 Y 1 A HIS 455 ? A HIS 118 23 1 Y 1 A HIS 456 ? A HIS 119 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 CAC AS AS N N 57 CAC O1 O N N 58 CAC O2 O N N 59 CAC C1 C N N 60 CAC C2 C N N 61 CAC H11 H N N 62 CAC H12 H N N 63 CAC H13 H N N 64 CAC H21 H N N 65 CAC H22 H N N 66 CAC H23 H N N 67 CL CL CL N N 68 CYS N N N N 69 CYS CA C N R 70 CYS C C N N 71 CYS O O N N 72 CYS CB C N N 73 CYS SG S N N 74 CYS OXT O N N 75 CYS H H N N 76 CYS H2 H N N 77 CYS HA H N N 78 CYS HB2 H N N 79 CYS HB3 H N N 80 CYS HG H N N 81 CYS HXT H N N 82 GLN N N N N 83 GLN CA C N S 84 GLN C C N N 85 GLN O O N N 86 GLN CB C N N 87 GLN CG C N N 88 GLN CD C N N 89 GLN OE1 O N N 90 GLN NE2 N N N 91 GLN OXT O N N 92 GLN H H N N 93 GLN H2 H N N 94 GLN HA H N N 95 GLN HB2 H N N 96 GLN HB3 H N N 97 GLN HG2 H N N 98 GLN HG3 H N N 99 GLN HE21 H N N 100 GLN HE22 H N N 101 GLN HXT H N N 102 GLU N N N N 103 GLU CA C N S 104 GLU C C N N 105 GLU O O N N 106 GLU CB C N N 107 GLU CG C N N 108 GLU CD C N N 109 GLU OE1 O N N 110 GLU OE2 O N N 111 GLU OXT O N N 112 GLU H H N N 113 GLU H2 H N N 114 GLU HA H N N 115 GLU HB2 H N N 116 GLU HB3 H N N 117 GLU HG2 H N N 118 GLU HG3 H N N 119 GLU HE2 H N N 120 GLU HXT H N N 121 GLY N N N N 122 GLY CA C N N 123 GLY C C N N 124 GLY O O N N 125 GLY OXT O N N 126 GLY H H N N 127 GLY H2 H N N 128 GLY HA2 H N N 129 GLY HA3 H N N 130 GLY HXT H N N 131 GOL C1 C N N 132 GOL O1 O N N 133 GOL C2 C N N 134 GOL O2 O N N 135 GOL C3 C N N 136 GOL O3 O N N 137 GOL H11 H N N 138 GOL H12 H N N 139 GOL HO1 H N N 140 GOL H2 H N N 141 GOL HO2 H N N 142 GOL H31 H N N 143 GOL H32 H N N 144 GOL HO3 H N N 145 HIS N N N N 146 HIS CA C N S 147 HIS C C N N 148 HIS O O N N 149 HIS CB C N N 150 HIS CG C Y N 151 HIS ND1 N Y N 152 HIS CD2 C Y N 153 HIS CE1 C Y N 154 HIS NE2 N Y N 155 HIS OXT O N N 156 HIS H H N N 157 HIS H2 H N N 158 HIS HA H N N 159 HIS HB2 H N N 160 HIS HB3 H N N 161 HIS HD1 H N N 162 HIS HD2 H N N 163 HIS HE1 H N N 164 HIS HE2 H N N 165 HIS HXT H N N 166 HOH O O N N 167 HOH H1 H N N 168 HOH H2 H N N 169 ILE N N N N 170 ILE CA C N S 171 ILE C C N N 172 ILE O O N N 173 ILE CB C N S 174 ILE CG1 C N N 175 ILE CG2 C N N 176 ILE CD1 C N N 177 ILE OXT O N N 178 ILE H H N N 179 ILE H2 H N N 180 ILE HA H N N 181 ILE HB H N N 182 ILE HG12 H N N 183 ILE HG13 H N N 184 ILE HG21 H N N 185 ILE HG22 H N N 186 ILE HG23 H N N 187 ILE HD11 H N N 188 ILE HD12 H N N 189 ILE HD13 H N N 190 ILE HXT H N N 191 LEU N N N N 192 LEU CA C N S 193 LEU C C N N 194 LEU O O N N 195 LEU CB C N N 196 LEU CG C N N 197 LEU CD1 C N N 198 LEU CD2 C N N 199 LEU OXT O N N 200 LEU H H N N 201 LEU H2 H N N 202 LEU HA H N N 203 LEU HB2 H N N 204 LEU HB3 H N N 205 LEU HG H N N 206 LEU HD11 H N N 207 LEU HD12 H N N 208 LEU HD13 H N N 209 LEU HD21 H N N 210 LEU HD22 H N N 211 LEU HD23 H N N 212 LEU HXT H N N 213 LYS N N N N 214 LYS CA C N S 215 LYS C C N N 216 LYS O O N N 217 LYS CB C N N 218 LYS CG C N N 219 LYS CD C N N 220 LYS CE C N N 221 LYS NZ N N N 222 LYS OXT O N N 223 LYS H H N N 224 LYS H2 H N N 225 LYS HA H N N 226 LYS HB2 H N N 227 LYS HB3 H N N 228 LYS HG2 H N N 229 LYS HG3 H N N 230 LYS HD2 H N N 231 LYS HD3 H N N 232 LYS HE2 H N N 233 LYS HE3 H N N 234 LYS HZ1 H N N 235 LYS HZ2 H N N 236 LYS HZ3 H N N 237 LYS HXT H N N 238 MET N N N N 239 MET CA C N S 240 MET C C N N 241 MET O O N N 242 MET CB C N N 243 MET CG C N N 244 MET SD S N N 245 MET CE C N N 246 MET OXT O N N 247 MET H H N N 248 MET H2 H N N 249 MET HA H N N 250 MET HB2 H N N 251 MET HB3 H N N 252 MET HG2 H N N 253 MET HG3 H N N 254 MET HE1 H N N 255 MET HE2 H N N 256 MET HE3 H N N 257 MET HXT H N N 258 PHE N N N N 259 PHE CA C N S 260 PHE C C N N 261 PHE O O N N 262 PHE CB C N N 263 PHE CG C Y N 264 PHE CD1 C Y N 265 PHE CD2 C Y N 266 PHE CE1 C Y N 267 PHE CE2 C Y N 268 PHE CZ C Y N 269 PHE OXT O N N 270 PHE H H N N 271 PHE H2 H N N 272 PHE HA H N N 273 PHE HB2 H N N 274 PHE HB3 H N N 275 PHE HD1 H N N 276 PHE HD2 H N N 277 PHE HE1 H N N 278 PHE HE2 H N N 279 PHE HZ H N N 280 PHE HXT H N N 281 PRO N N N N 282 PRO CA C N S 283 PRO C C N N 284 PRO O O N N 285 PRO CB C N N 286 PRO CG C N N 287 PRO CD C N N 288 PRO OXT O N N 289 PRO H H N N 290 PRO HA H N N 291 PRO HB2 H N N 292 PRO HB3 H N N 293 PRO HG2 H N N 294 PRO HG3 H N N 295 PRO HD2 H N N 296 PRO HD3 H N N 297 PRO HXT H N N 298 SER N N N N 299 SER CA C N S 300 SER C C N N 301 SER O O N N 302 SER CB C N N 303 SER OG O N N 304 SER OXT O N N 305 SER H H N N 306 SER H2 H N N 307 SER HA H N N 308 SER HB2 H N N 309 SER HB3 H N N 310 SER HG H N N 311 SER HXT H N N 312 THR N N N N 313 THR CA C N S 314 THR C C N N 315 THR O O N N 316 THR CB C N R 317 THR OG1 O N N 318 THR CG2 C N N 319 THR OXT O N N 320 THR H H N N 321 THR H2 H N N 322 THR HA H N N 323 THR HB H N N 324 THR HG1 H N N 325 THR HG21 H N N 326 THR HG22 H N N 327 THR HG23 H N N 328 THR HXT H N N 329 TRP N N N N 330 TRP CA C N S 331 TRP C C N N 332 TRP O O N N 333 TRP CB C N N 334 TRP CG C Y N 335 TRP CD1 C Y N 336 TRP CD2 C Y N 337 TRP NE1 N Y N 338 TRP CE2 C Y N 339 TRP CE3 C Y N 340 TRP CZ2 C Y N 341 TRP CZ3 C Y N 342 TRP CH2 C Y N 343 TRP OXT O N N 344 TRP H H N N 345 TRP H2 H N N 346 TRP HA H N N 347 TRP HB2 H N N 348 TRP HB3 H N N 349 TRP HD1 H N N 350 TRP HE1 H N N 351 TRP HE3 H N N 352 TRP HZ2 H N N 353 TRP HZ3 H N N 354 TRP HH2 H N N 355 TRP HXT H N N 356 TYR N N N N 357 TYR CA C N S 358 TYR C C N N 359 TYR O O N N 360 TYR CB C N N 361 TYR CG C Y N 362 TYR CD1 C Y N 363 TYR CD2 C Y N 364 TYR CE1 C Y N 365 TYR CE2 C Y N 366 TYR CZ C Y N 367 TYR OH O N N 368 TYR OXT O N N 369 TYR H H N N 370 TYR H2 H N N 371 TYR HA H N N 372 TYR HB2 H N N 373 TYR HB3 H N N 374 TYR HD1 H N N 375 TYR HD2 H N N 376 TYR HE1 H N N 377 TYR HE2 H N N 378 TYR HH H N N 379 TYR HXT H N N 380 VAL N N N N 381 VAL CA C N S 382 VAL C C N N 383 VAL O O N N 384 VAL CB C N N 385 VAL CG1 C N N 386 VAL CG2 C N N 387 VAL OXT O N N 388 VAL H H N N 389 VAL H2 H N N 390 VAL HA H N N 391 VAL HB H N N 392 VAL HG11 H N N 393 VAL HG12 H N N 394 VAL HG13 H N N 395 VAL HG21 H N N 396 VAL HG22 H N N 397 VAL HG23 H N N 398 VAL HXT H N N 399 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 CAC AS O1 doub N N 54 CAC AS O2 sing N N 55 CAC AS C1 sing N N 56 CAC AS C2 sing N N 57 CAC C1 H11 sing N N 58 CAC C1 H12 sing N N 59 CAC C1 H13 sing N N 60 CAC C2 H21 sing N N 61 CAC C2 H22 sing N N 62 CAC C2 H23 sing N N 63 CYS N CA sing N N 64 CYS N H sing N N 65 CYS N H2 sing N N 66 CYS CA C sing N N 67 CYS CA CB sing N N 68 CYS CA HA sing N N 69 CYS C O doub N N 70 CYS C OXT sing N N 71 CYS CB SG sing N N 72 CYS CB HB2 sing N N 73 CYS CB HB3 sing N N 74 CYS SG HG sing N N 75 CYS OXT HXT sing N N 76 GLN N CA sing N N 77 GLN N H sing N N 78 GLN N H2 sing N N 79 GLN CA C sing N N 80 GLN CA CB sing N N 81 GLN CA HA sing N N 82 GLN C O doub N N 83 GLN C OXT sing N N 84 GLN CB CG sing N N 85 GLN CB HB2 sing N N 86 GLN CB HB3 sing N N 87 GLN CG CD sing N N 88 GLN CG HG2 sing N N 89 GLN CG HG3 sing N N 90 GLN CD OE1 doub N N 91 GLN CD NE2 sing N N 92 GLN NE2 HE21 sing N N 93 GLN NE2 HE22 sing N N 94 GLN OXT HXT sing N N 95 GLU N CA sing N N 96 GLU N H sing N N 97 GLU N H2 sing N N 98 GLU CA C sing N N 99 GLU CA CB sing N N 100 GLU CA HA sing N N 101 GLU C O doub N N 102 GLU C OXT sing N N 103 GLU CB CG sing N N 104 GLU CB HB2 sing N N 105 GLU CB HB3 sing N N 106 GLU CG CD sing N N 107 GLU CG HG2 sing N N 108 GLU CG HG3 sing N N 109 GLU CD OE1 doub N N 110 GLU CD OE2 sing N N 111 GLU OE2 HE2 sing N N 112 GLU OXT HXT sing N N 113 GLY N CA sing N N 114 GLY N H sing N N 115 GLY N H2 sing N N 116 GLY CA C sing N N 117 GLY CA HA2 sing N N 118 GLY CA HA3 sing N N 119 GLY C O doub N N 120 GLY C OXT sing N N 121 GLY OXT HXT sing N N 122 GOL C1 O1 sing N N 123 GOL C1 C2 sing N N 124 GOL C1 H11 sing N N 125 GOL C1 H12 sing N N 126 GOL O1 HO1 sing N N 127 GOL C2 O2 sing N N 128 GOL C2 C3 sing N N 129 GOL C2 H2 sing N N 130 GOL O2 HO2 sing N N 131 GOL C3 O3 sing N N 132 GOL C3 H31 sing N N 133 GOL C3 H32 sing N N 134 GOL O3 HO3 sing N N 135 HIS N CA sing N N 136 HIS N H sing N N 137 HIS N H2 sing N N 138 HIS CA C sing N N 139 HIS CA CB sing N N 140 HIS CA HA sing N N 141 HIS C O doub N N 142 HIS C OXT sing N N 143 HIS CB CG sing N N 144 HIS CB HB2 sing N N 145 HIS CB HB3 sing N N 146 HIS CG ND1 sing Y N 147 HIS CG CD2 doub Y N 148 HIS ND1 CE1 doub Y N 149 HIS ND1 HD1 sing N N 150 HIS CD2 NE2 sing Y N 151 HIS CD2 HD2 sing N N 152 HIS CE1 NE2 sing Y N 153 HIS CE1 HE1 sing N N 154 HIS NE2 HE2 sing N N 155 HIS OXT HXT sing N N 156 HOH O H1 sing N N 157 HOH O H2 sing N N 158 ILE N CA sing N N 159 ILE N H sing N N 160 ILE N H2 sing N N 161 ILE CA C sing N N 162 ILE CA CB sing N N 163 ILE CA HA sing N N 164 ILE C O doub N N 165 ILE C OXT sing N N 166 ILE CB CG1 sing N N 167 ILE CB CG2 sing N N 168 ILE CB HB sing N N 169 ILE CG1 CD1 sing N N 170 ILE CG1 HG12 sing N N 171 ILE CG1 HG13 sing N N 172 ILE CG2 HG21 sing N N 173 ILE CG2 HG22 sing N N 174 ILE CG2 HG23 sing N N 175 ILE CD1 HD11 sing N N 176 ILE CD1 HD12 sing N N 177 ILE CD1 HD13 sing N N 178 ILE OXT HXT sing N N 179 LEU N CA sing N N 180 LEU N H sing N N 181 LEU N H2 sing N N 182 LEU CA C sing N N 183 LEU CA CB sing N N 184 LEU CA HA sing N N 185 LEU C O doub N N 186 LEU C OXT sing N N 187 LEU CB CG sing N N 188 LEU CB HB2 sing N N 189 LEU CB HB3 sing N N 190 LEU CG CD1 sing N N 191 LEU CG CD2 sing N N 192 LEU CG HG sing N N 193 LEU CD1 HD11 sing N N 194 LEU CD1 HD12 sing N N 195 LEU CD1 HD13 sing N N 196 LEU CD2 HD21 sing N N 197 LEU CD2 HD22 sing N N 198 LEU CD2 HD23 sing N N 199 LEU OXT HXT sing N N 200 LYS N CA sing N N 201 LYS N H sing N N 202 LYS N H2 sing N N 203 LYS CA C sing N N 204 LYS CA CB sing N N 205 LYS CA HA sing N N 206 LYS C O doub N N 207 LYS C OXT sing N N 208 LYS CB CG sing N N 209 LYS CB HB2 sing N N 210 LYS CB HB3 sing N N 211 LYS CG CD sing N N 212 LYS CG HG2 sing N N 213 LYS CG HG3 sing N N 214 LYS CD CE sing N N 215 LYS CD HD2 sing N N 216 LYS CD HD3 sing N N 217 LYS CE NZ sing N N 218 LYS CE HE2 sing N N 219 LYS CE HE3 sing N N 220 LYS NZ HZ1 sing N N 221 LYS NZ HZ2 sing N N 222 LYS NZ HZ3 sing N N 223 LYS OXT HXT sing N N 224 MET N CA sing N N 225 MET N H sing N N 226 MET N H2 sing N N 227 MET CA C sing N N 228 MET CA CB sing N N 229 MET CA HA sing N N 230 MET C O doub N N 231 MET C OXT sing N N 232 MET CB CG sing N N 233 MET CB HB2 sing N N 234 MET CB HB3 sing N N 235 MET CG SD sing N N 236 MET CG HG2 sing N N 237 MET CG HG3 sing N N 238 MET SD CE sing N N 239 MET CE HE1 sing N N 240 MET CE HE2 sing N N 241 MET CE HE3 sing N N 242 MET OXT HXT sing N N 243 PHE N CA sing N N 244 PHE N H sing N N 245 PHE N H2 sing N N 246 PHE CA C sing N N 247 PHE CA CB sing N N 248 PHE CA HA sing N N 249 PHE C O doub N N 250 PHE C OXT sing N N 251 PHE CB CG sing N N 252 PHE CB HB2 sing N N 253 PHE CB HB3 sing N N 254 PHE CG CD1 doub Y N 255 PHE CG CD2 sing Y N 256 PHE CD1 CE1 sing Y N 257 PHE CD1 HD1 sing N N 258 PHE CD2 CE2 doub Y N 259 PHE CD2 HD2 sing N N 260 PHE CE1 CZ doub Y N 261 PHE CE1 HE1 sing N N 262 PHE CE2 CZ sing Y N 263 PHE CE2 HE2 sing N N 264 PHE CZ HZ sing N N 265 PHE OXT HXT sing N N 266 PRO N CA sing N N 267 PRO N CD sing N N 268 PRO N H sing N N 269 PRO CA C sing N N 270 PRO CA CB sing N N 271 PRO CA HA sing N N 272 PRO C O doub N N 273 PRO C OXT sing N N 274 PRO CB CG sing N N 275 PRO CB HB2 sing N N 276 PRO CB HB3 sing N N 277 PRO CG CD sing N N 278 PRO CG HG2 sing N N 279 PRO CG HG3 sing N N 280 PRO CD HD2 sing N N 281 PRO CD HD3 sing N N 282 PRO OXT HXT sing N N 283 SER N CA sing N N 284 SER N H sing N N 285 SER N H2 sing N N 286 SER CA C sing N N 287 SER CA CB sing N N 288 SER CA HA sing N N 289 SER C O doub N N 290 SER C OXT sing N N 291 SER CB OG sing N N 292 SER CB HB2 sing N N 293 SER CB HB3 sing N N 294 SER OG HG sing N N 295 SER OXT HXT sing N N 296 THR N CA sing N N 297 THR N H sing N N 298 THR N H2 sing N N 299 THR CA C sing N N 300 THR CA CB sing N N 301 THR CA HA sing N N 302 THR C O doub N N 303 THR C OXT sing N N 304 THR CB OG1 sing N N 305 THR CB CG2 sing N N 306 THR CB HB sing N N 307 THR OG1 HG1 sing N N 308 THR CG2 HG21 sing N N 309 THR CG2 HG22 sing N N 310 THR CG2 HG23 sing N N 311 THR OXT HXT sing N N 312 TRP N CA sing N N 313 TRP N H sing N N 314 TRP N H2 sing N N 315 TRP CA C sing N N 316 TRP CA CB sing N N 317 TRP CA HA sing N N 318 TRP C O doub N N 319 TRP C OXT sing N N 320 TRP CB CG sing N N 321 TRP CB HB2 sing N N 322 TRP CB HB3 sing N N 323 TRP CG CD1 doub Y N 324 TRP CG CD2 sing Y N 325 TRP CD1 NE1 sing Y N 326 TRP CD1 HD1 sing N N 327 TRP CD2 CE2 doub Y N 328 TRP CD2 CE3 sing Y N 329 TRP NE1 CE2 sing Y N 330 TRP NE1 HE1 sing N N 331 TRP CE2 CZ2 sing Y N 332 TRP CE3 CZ3 doub Y N 333 TRP CE3 HE3 sing N N 334 TRP CZ2 CH2 doub Y N 335 TRP CZ2 HZ2 sing N N 336 TRP CZ3 CH2 sing Y N 337 TRP CZ3 HZ3 sing N N 338 TRP CH2 HH2 sing N N 339 TRP OXT HXT sing N N 340 TYR N CA sing N N 341 TYR N H sing N N 342 TYR N H2 sing N N 343 TYR CA C sing N N 344 TYR CA CB sing N N 345 TYR CA HA sing N N 346 TYR C O doub N N 347 TYR C OXT sing N N 348 TYR CB CG sing N N 349 TYR CB HB2 sing N N 350 TYR CB HB3 sing N N 351 TYR CG CD1 doub Y N 352 TYR CG CD2 sing Y N 353 TYR CD1 CE1 sing Y N 354 TYR CD1 HD1 sing N N 355 TYR CD2 CE2 doub Y N 356 TYR CD2 HD2 sing N N 357 TYR CE1 CZ doub Y N 358 TYR CE1 HE1 sing N N 359 TYR CE2 CZ sing Y N 360 TYR CE2 HE2 sing N N 361 TYR CZ OH sing N N 362 TYR OH HH sing N N 363 TYR OXT HXT sing N N 364 VAL N CA sing N N 365 VAL N H sing N N 366 VAL N H2 sing N N 367 VAL CA C sing N N 368 VAL CA CB sing N N 369 VAL CA HA sing N N 370 VAL C O doub N N 371 VAL C OXT sing N N 372 VAL CB CG1 sing N N 373 VAL CB CG2 sing N N 374 VAL CB HB sing N N 375 VAL CG1 HG11 sing N N 376 VAL CG1 HG12 sing N N 377 VAL CG1 HG13 sing N N 378 VAL CG2 HG21 sing N N 379 VAL CG2 HG22 sing N N 380 VAL CG2 HG23 sing N N 381 VAL OXT HXT sing N N 382 # _pdbx_audit_support.funding_organization 'French National Research Agency' _pdbx_audit_support.country France _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4WFT _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5OC4 _atom_sites.fract_transf_matrix[1][1] 0.011913 _atom_sites.fract_transf_matrix[1][2] 0.006878 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013756 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017699 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AS C CL N O S # loop_