data_5OC6
#
_entry.id 5OC6
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5OC6 pdb_00005oc6 10.2210/pdb5oc6/pdb
WWPDB D_1200005557 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2018-12-26
2 'Structure model' 1 1 2019-01-16
3 'Structure model' 1 2 2019-04-17
4 'Structure model' 1 3 2024-01-17
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 3 'Structure model' 'Data collection'
4 3 'Structure model' 'Database references'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Database references'
7 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 3 'Structure model' citation
3 3 'Structure model' pdbx_database_proc
4 4 'Structure model' chem_comp_atom
5 4 'Structure model' chem_comp_bond
6 4 'Structure model' database_2
7 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_ASTM'
4 2 'Structure model' '_citation.journal_id_CSD'
5 2 'Structure model' '_citation.journal_id_ISSN'
6 2 'Structure model' '_citation.pdbx_database_id_DOI'
7 2 'Structure model' '_citation.pdbx_database_id_PubMed'
8 2 'Structure model' '_citation.title'
9 2 'Structure model' '_citation.year'
10 3 'Structure model' '_citation.journal_volume'
11 3 'Structure model' '_citation.page_first'
12 3 'Structure model' '_citation.page_last'
13 4 'Structure model' '_database_2.pdbx_DOI'
14 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5OC6
_pdbx_database_status.recvd_initial_deposition_date 2017-06-29
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Bou-nader, C.' 1 ?
'Pecqueur, L.' 2 ?
'Hamdane, D.' 3 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_id_ASTM NARHAD
_citation.journal_id_CSD 0389
_citation.journal_id_ISSN 1362-4962
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 47
_citation.language ?
_citation.page_first 3117
_citation.page_last 3126
_citation.title
'Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.'
_citation.year 2019
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1093/nar/gky1302
_citation.pdbx_database_id_PubMed 30605527
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Bou-Nader, C.' 1 ?
primary 'Barraud, P.' 2 ?
primary 'Pecqueur, L.' 3 ?
primary 'Perez, J.' 4 ?
primary 'Velours, C.' 5 ?
primary 'Shepard, W.' 6 ?
primary 'Fontecave, M.' 7 ?
primary 'Tisne, C.' 8 ?
primary 'Hamdane, D.' 9 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'tRNA-dihydrouridine(20) synthase [NAD(P)+]-like' 13728.697 1 1.3.1.- ? 'UNP residues 338-450' ?
2 polymer syn RNA 3482.130 2 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
'Dihydrouridine synthase 2,Up-regulated in lung cancer protein 8,URLC8,tRNA-dihydrouridine synthase 2-like,hDUS2'
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;MTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWD
KSKKLAEQAAAIVCLRSQGLPEGRLGEESPSLHKHHHHHH
;
;MTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWD
KSKKLAEQAAAIVCLRSQGLPEGRLGEESPSLHKHHHHHH
;
A ?
2 polyribonucleotide no no CGAACUUCGCG CGAACUUCGCG B,C ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET n
1 2 THR n
1 3 SER n
1 4 GLU n
1 5 GLN n
1 6 THR n
1 7 GLY n
1 8 GLU n
1 9 PRO n
1 10 ALA n
1 11 GLU n
1 12 ASP n
1 13 THR n
1 14 SER n
1 15 GLY n
1 16 VAL n
1 17 ILE n
1 18 LYS n
1 19 MET n
1 20 ALA n
1 21 VAL n
1 22 LYS n
1 23 PHE n
1 24 ASP n
1 25 ARG n
1 26 ARG n
1 27 ALA n
1 28 TYR n
1 29 PRO n
1 30 ALA n
1 31 GLN n
1 32 ILE n
1 33 THR n
1 34 PRO n
1 35 LYS n
1 36 MET n
1 37 CYS n
1 38 LEU n
1 39 LEU n
1 40 GLU n
1 41 TRP n
1 42 CYS n
1 43 ARG n
1 44 ARG n
1 45 GLU n
1 46 LYS n
1 47 LEU n
1 48 ALA n
1 49 GLN n
1 50 PRO n
1 51 VAL n
1 52 TYR n
1 53 GLU n
1 54 THR n
1 55 VAL n
1 56 GLN n
1 57 ARG n
1 58 PRO n
1 59 LEU n
1 60 ASP n
1 61 ARG n
1 62 LEU n
1 63 PHE n
1 64 SER n
1 65 SER n
1 66 ILE n
1 67 VAL n
1 68 THR n
1 69 VAL n
1 70 ALA n
1 71 GLU n
1 72 GLN n
1 73 LYS n
1 74 TYR n
1 75 GLN n
1 76 SER n
1 77 THR n
1 78 LEU n
1 79 TRP n
1 80 ASP n
1 81 LYS n
1 82 SER n
1 83 LYS n
1 84 LYS n
1 85 LEU n
1 86 ALA n
1 87 GLU n
1 88 GLN n
1 89 ALA n
1 90 ALA n
1 91 ALA n
1 92 ILE n
1 93 VAL n
1 94 CYS n
1 95 LEU n
1 96 ARG n
1 97 SER n
1 98 GLN n
1 99 GLY n
1 100 LEU n
1 101 PRO n
1 102 GLU n
1 103 GLY n
1 104 ARG n
1 105 LEU n
1 106 GLY n
1 107 GLU n
1 108 GLU n
1 109 SER n
1 110 PRO n
1 111 SER n
1 112 LEU n
1 113 HIS n
1 114 LYS n
1 115 HIS n
1 116 HIS n
1 117 HIS n
1 118 HIS n
1 119 HIS n
1 120 HIS n
2 1 C n
2 2 G n
2 3 A n
2 4 A n
2 5 C n
2 6 U n
2 7 U n
2 8 C n
2 9 G n
2 10 C n
2 11 G n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type 'Biological sequence'
_entity_src_gen.pdbx_beg_seq_num 1
_entity_src_gen.pdbx_end_seq_num 120
_entity_src_gen.gene_src_common_name Human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'DUS2, DUS2L'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type pET11d
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_pdbx_entity_src_syn.entity_id 2
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 11
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MET 1 337 ? ? ? A . n
A 1 2 THR 2 338 ? ? ? A . n
A 1 3 SER 3 339 ? ? ? A . n
A 1 4 GLU 4 340 ? ? ? A . n
A 1 5 GLN 5 341 ? ? ? A . n
A 1 6 THR 6 342 ? ? ? A . n
A 1 7 GLY 7 343 ? ? ? A . n
A 1 8 GLU 8 344 ? ? ? A . n
A 1 9 PRO 9 345 ? ? ? A . n
A 1 10 ALA 10 346 ? ? ? A . n
A 1 11 GLU 11 347 ? ? ? A . n
A 1 12 ASP 12 348 ? ? ? A . n
A 1 13 THR 13 349 ? ? ? A . n
A 1 14 SER 14 350 ? ? ? A . n
A 1 15 GLY 15 351 351 GLY GLY A . n
A 1 16 VAL 16 352 352 VAL VAL A . n
A 1 17 ILE 17 353 353 ILE ILE A . n
A 1 18 LYS 18 354 354 LYS LYS A . n
A 1 19 MET 19 355 355 MET MET A . n
A 1 20 ALA 20 356 356 ALA ALA A . n
A 1 21 VAL 21 357 357 VAL VAL A . n
A 1 22 LYS 22 358 358 LYS LYS A . n
A 1 23 PHE 23 359 359 PHE PHE A . n
A 1 24 ASP 24 360 360 ASP ASP A . n
A 1 25 ARG 25 361 361 ARG ARG A . n
A 1 26 ARG 26 362 362 ARG ARG A . n
A 1 27 ALA 27 363 363 ALA ALA A . n
A 1 28 TYR 28 364 364 TYR TYR A . n
A 1 29 PRO 29 365 365 PRO PRO A . n
A 1 30 ALA 30 366 366 ALA ALA A . n
A 1 31 GLN 31 367 367 GLN GLN A . n
A 1 32 ILE 32 368 368 ILE ILE A . n
A 1 33 THR 33 369 369 THR THR A . n
A 1 34 PRO 34 370 370 PRO PRO A . n
A 1 35 LYS 35 371 371 LYS LYS A . n
A 1 36 MET 36 372 372 MET MET A . n
A 1 37 CYS 37 373 373 CYS CYS A . n
A 1 38 LEU 38 374 374 LEU LEU A . n
A 1 39 LEU 39 375 375 LEU LEU A . n
A 1 40 GLU 40 376 376 GLU GLU A . n
A 1 41 TRP 41 377 377 TRP TRP A . n
A 1 42 CYS 42 378 378 CYS CYS A . n
A 1 43 ARG 43 379 379 ARG ARG A . n
A 1 44 ARG 44 380 380 ARG ARG A . n
A 1 45 GLU 45 381 381 GLU GLU A . n
A 1 46 LYS 46 382 382 LYS LYS A . n
A 1 47 LEU 47 383 383 LEU LEU A . n
A 1 48 ALA 48 384 384 ALA ALA A . n
A 1 49 GLN 49 385 385 GLN GLN A . n
A 1 50 PRO 50 386 386 PRO PRO A . n
A 1 51 VAL 51 387 387 VAL VAL A . n
A 1 52 TYR 52 388 388 TYR TYR A . n
A 1 53 GLU 53 389 389 GLU GLU A . n
A 1 54 THR 54 390 390 THR THR A . n
A 1 55 VAL 55 391 391 VAL VAL A . n
A 1 56 GLN 56 392 392 GLN GLN A . n
A 1 57 ARG 57 393 393 ARG ARG A . n
A 1 58 PRO 58 394 394 PRO PRO A . n
A 1 59 LEU 59 395 395 LEU LEU A . n
A 1 60 ASP 60 396 396 ASP ASP A . n
A 1 61 ARG 61 397 397 ARG ARG A . n
A 1 62 LEU 62 398 398 LEU LEU A . n
A 1 63 PHE 63 399 399 PHE PHE A . n
A 1 64 SER 64 400 400 SER SER A . n
A 1 65 SER 65 401 401 SER SER A . n
A 1 66 ILE 66 402 402 ILE ILE A . n
A 1 67 VAL 67 403 403 VAL VAL A . n
A 1 68 THR 68 404 404 THR THR A . n
A 1 69 VAL 69 405 405 VAL VAL A . n
A 1 70 ALA 70 406 406 ALA ALA A . n
A 1 71 GLU 71 407 407 GLU GLU A . n
A 1 72 GLN 72 408 408 GLN GLN A . n
A 1 73 LYS 73 409 409 LYS LYS A . n
A 1 74 TYR 74 410 410 TYR TYR A . n
A 1 75 GLN 75 411 411 GLN GLN A . n
A 1 76 SER 76 412 412 SER SER A . n
A 1 77 THR 77 413 413 THR THR A . n
A 1 78 LEU 78 414 414 LEU LEU A . n
A 1 79 TRP 79 415 415 TRP TRP A . n
A 1 80 ASP 80 416 416 ASP ASP A . n
A 1 81 LYS 81 417 417 LYS LYS A . n
A 1 82 SER 82 418 418 SER SER A . n
A 1 83 LYS 83 419 419 LYS LYS A . n
A 1 84 LYS 84 420 420 LYS LYS A . n
A 1 85 LEU 85 421 421 LEU LEU A . n
A 1 86 ALA 86 422 422 ALA ALA A . n
A 1 87 GLU 87 423 423 GLU GLU A . n
A 1 88 GLN 88 424 424 GLN GLN A . n
A 1 89 ALA 89 425 425 ALA ALA A . n
A 1 90 ALA 90 426 426 ALA ALA A . n
A 1 91 ALA 91 427 427 ALA ALA A . n
A 1 92 ILE 92 428 428 ILE ILE A . n
A 1 93 VAL 93 429 429 VAL VAL A . n
A 1 94 CYS 94 430 430 CYS CYS A . n
A 1 95 LEU 95 431 431 LEU LEU A . n
A 1 96 ARG 96 432 432 ARG ARG A . n
A 1 97 SER 97 433 433 SER SER A . n
A 1 98 GLN 98 434 434 GLN GLN A . n
A 1 99 GLY 99 435 435 GLY GLY A . n
A 1 100 LEU 100 436 436 LEU LEU A . n
A 1 101 PRO 101 437 437 PRO PRO A . n
A 1 102 GLU 102 438 438 GLU GLU A . n
A 1 103 GLY 103 439 439 GLY GLY A . n
A 1 104 ARG 104 440 440 ARG ARG A . n
A 1 105 LEU 105 441 ? ? ? A . n
A 1 106 GLY 106 442 ? ? ? A . n
A 1 107 GLU 107 443 ? ? ? A . n
A 1 108 GLU 108 444 ? ? ? A . n
A 1 109 SER 109 445 ? ? ? A . n
A 1 110 PRO 110 446 ? ? ? A . n
A 1 111 SER 111 447 ? ? ? A . n
A 1 112 LEU 112 448 ? ? ? A . n
A 1 113 HIS 113 449 ? ? ? A . n
A 1 114 LYS 114 450 ? ? ? A . n
A 1 115 HIS 115 451 ? ? ? A . n
A 1 116 HIS 116 452 ? ? ? A . n
A 1 117 HIS 117 453 ? ? ? A . n
A 1 118 HIS 118 454 ? ? ? A . n
A 1 119 HIS 119 455 ? ? ? A . n
A 1 120 HIS 120 456 ? ? ? A . n
B 2 1 C 1 1 1 C C B . n
B 2 2 G 2 2 2 G G B . n
B 2 3 A 3 3 3 A A B . n
B 2 4 A 4 4 4 A A B . n
B 2 5 C 5 5 5 C C B . n
B 2 6 U 6 6 6 U U B . n
B 2 7 U 7 7 7 U U B . n
B 2 8 C 8 8 8 C C B . n
B 2 9 G 9 9 9 G G B . n
B 2 10 C 10 10 10 C C B . n
B 2 11 G 11 11 11 G G B . n
C 2 1 C 1 1 1 C C C . n
C 2 2 G 2 2 2 G G C . n
C 2 3 A 3 3 3 A A C . n
C 2 4 A 4 4 4 A A C . n
C 2 5 C 5 5 5 C C C . n
C 2 6 U 6 6 6 U U C . n
C 2 7 U 7 7 7 U U C . n
C 2 8 C 8 8 8 C C C . n
C 2 9 G 9 9 9 G G C . n
C 2 10 C 10 10 10 C C C . n
C 2 11 G 11 11 11 G G C . n
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A ARG 361 ? CG ? A ARG 25 CG
2 1 Y 1 A ARG 361 ? CD ? A ARG 25 CD
3 1 Y 1 A ARG 361 ? NE ? A ARG 25 NE
4 1 Y 1 A ARG 361 ? CZ ? A ARG 25 CZ
5 1 Y 1 A ARG 361 ? NH1 ? A ARG 25 NH1
6 1 Y 1 A ARG 361 ? NH2 ? A ARG 25 NH2
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.3 1
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4
#
_cell.entry_id 5OC6
_cell.length_a 58.440
_cell.length_b 115.560
_cell.length_c 66.620
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 16
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5OC6
_symmetry.space_group_name_H-M 'C 2 2 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 20
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5OC6
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.72
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 54.74
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 6
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 292
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
;15% v/v isopropanol
20 mM MgCl2
50 mM MES
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'ADSC QUANTUM 315r'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2015-06-13
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.98010
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 2'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.98010
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 2'
_diffrn_source.pdbx_synchrotron_site SOLEIL
#
_reflns.B_iso_Wilson_estimate 100.05
_reflns.entry_id 5OC6
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 3.2
_reflns.d_resolution_low 43.65
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 3855
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 97.52
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 5.8
_reflns.pdbx_Rmerge_I_obs 0.3064
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 5.11
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.995
_reflns.pdbx_R_split ?
#
_reflns_shell.d_res_high 3.2
_reflns_shell.d_res_low 3.314
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 0.85
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs 358
_reflns_shell.percent_possible_all 93.44
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy 3.8
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half 0.302
_reflns_shell.pdbx_R_split ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 5OC6
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 3855
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 43.65
_refine.ls_d_res_high 3.20
_refine.ls_percent_reflns_obs 97.7
_refine.ls_R_factor_obs 0.228
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.226
_refine.ls_R_factor_R_free 0.242
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 9.860
_refine.ls_number_reflns_R_free 380
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.926
_refine.correlation_coeff_Fo_to_Fc_free 0.917
_refine.B_iso_mean 99.32
_refine.aniso_B[1][1] 11.53310
_refine.aniso_B[2][2] -8.56830
_refine.aniso_B[3][3] -2.96490
_refine.aniso_B[1][2] 0.00000
_refine.aniso_B[1][3] 0.00000
_refine.aniso_B[2][3] 0.00000
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 4wft
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI 0.438
#
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_analyze.entry_id 5OC6
_refine_analyze.Luzzati_coordinate_error_obs 0.53
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id 1
_refine_hist.pdbx_number_atoms_protein 718
_refine_hist.pdbx_number_atoms_nucleic_acid 468
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 1186
_refine_hist.d_res_high 3.20
_refine_hist.d_res_low 43.65
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
t_bond_d 0.008 ? 2.00 1251 'X-RAY DIFFRACTION' HARMONIC
t_angle_deg 0.85 ? 2.00 1794 'X-RAY DIFFRACTION' HARMONIC
t_dihedral_angle_d ? ? 2.00 360 'X-RAY DIFFRACTION' SINUSOIDAL
t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ?
t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ?
t_trig_c_planes ? ? 2.00 16 'X-RAY DIFFRACTION' HARMONIC
t_gen_planes ? ? 5.00 125 'X-RAY DIFFRACTION' HARMONIC
t_it ? ? 20.00 1251 'X-RAY DIFFRACTION' HARMONIC
t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
t_omega_torsion 2.40 ? ? ? 'X-RAY DIFFRACTION' ?
t_other_torsion 21.85 ? ? ? 'X-RAY DIFFRACTION' ?
t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ?
t_chiral_improper_torsion ? ? 5.00 183 'X-RAY DIFFRACTION' SEMIHARMONIC
t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ?
t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ?
t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ?
t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ?
t_ideal_dist_contact ? ? 4.00 1416 'X-RAY DIFFRACTION' SEMIHARMONIC
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.d_res_high 3.20
_refine_ls_shell.d_res_low 3.58
_refine_ls_shell.number_reflns_R_work 940
_refine_ls_shell.R_factor_R_work 0.2417
_refine_ls_shell.percent_reflns_obs 95.50
_refine_ls_shell.R_factor_R_free 0.2660
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free 9.62
_refine_ls_shell.number_reflns_R_free 100
_refine_ls_shell.number_reflns_all 1040
_refine_ls_shell.R_factor_all 0.2438
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.number_reflns_obs ?
#
_struct.entry_id 5OC6
_struct.title
'Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD in complex with a 22 nucleotide dsRNA'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 5OC6
_struct_keywords.text 'double-stranded RNA-binding domain protein-RNA complex dsRNA, RNA BINDING PROTEIN'
_struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 UNP DUS2L_HUMAN Q9NX74 ? 1
;TSEQTGEPAEDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDK
SKKLAEQAAAIVCLRSQGLPEGRLGEESPSLHK
;
338
2 PDB 5OC6 5OC6 ? 2 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 5OC6 A 2 ? 114 ? Q9NX74 338 ? 450 ? 338 450
2 2 5OC6 B 1 ? 11 ? 5OC6 1 ? 11 ? 1 11
3 2 5OC6 C 1 ? 11 ? 5OC6 1 ? 11 ? 1 11
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 5OC6 MET A 1 ? UNP Q9NX74 ? ? 'initiating methionine' 337 1
1 5OC6 HIS A 115 ? UNP Q9NX74 ? ? 'expression tag' 451 2
1 5OC6 HIS A 116 ? UNP Q9NX74 ? ? 'expression tag' 452 3
1 5OC6 HIS A 117 ? UNP Q9NX74 ? ? 'expression tag' 453 4
1 5OC6 HIS A 118 ? UNP Q9NX74 ? ? 'expression tag' 454 5
1 5OC6 HIS A 119 ? UNP Q9NX74 ? ? 'expression tag' 455 6
1 5OC6 HIS A 120 ? UNP Q9NX74 ? ? 'expression tag' 456 7
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details trimeric
_pdbx_struct_assembly.oligomeric_count 3
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 2180 ?
1 MORE -18 ?
1 'SSA (A^2)' 8850 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 AA1 ASP A 24 ? TYR A 28 ? ASP A 360 TYR A 364 5 ? 5
HELX_P HELX_P2 AA2 THR A 33 ? GLU A 45 ? THR A 369 GLU A 381 1 ? 13
HELX_P HELX_P3 AA3 SER A 82 ? GLN A 98 ? SER A 418 GLN A 434 1 ? 17
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? B C 1 N3 ? ? ? 1_555 C G 9 N1 ? ? B C 1 C G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? B C 1 N4 ? ? ? 1_555 C G 9 O6 ? ? B C 1 C G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? B C 1 O2 ? ? ? 1_555 C G 9 N2 ? ? B C 1 C G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 C C 8 N3 ? ? B G 2 C C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 C C 8 O2 ? ? B G 2 C C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 C C 8 N4 ? ? B G 2 C C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? B A 3 N1 ? ? ? 1_555 C U 7 N3 ? ? B A 3 C U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? B A 3 N6 ? ? ? 1_555 C U 7 O4 ? ? B A 3 C U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? B A 4 N1 ? ? ? 1_555 C U 6 N3 ? ? B A 4 C U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? B A 4 N6 ? ? ? 1_555 C U 6 O4 ? ? B A 4 C U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? B U 6 N3 ? ? ? 1_555 C A 4 N1 ? ? B U 6 C A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? B U 6 O4 ? ? ? 1_555 C A 4 N6 ? ? B U 6 C A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? B U 7 N3 ? ? ? 1_555 C A 3 N1 ? ? B U 7 C A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? B U 7 O4 ? ? ? 1_555 C A 3 N6 ? ? B U 7 C A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? B C 8 N3 ? ? ? 1_555 C G 2 N1 ? ? B C 8 C G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? B C 8 N4 ? ? ? 1_555 C G 2 O6 ? ? B C 8 C G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? B C 8 O2 ? ? ? 1_555 C G 2 N2 ? ? B C 8 C G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? B G 9 N1 ? ? ? 1_555 C C 1 N3 ? ? B G 9 C C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? B G 9 N2 ? ? ? 1_555 C C 1 O2 ? ? B G 9 C C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? B G 9 O6 ? ? ? 1_555 C C 1 N4 ? ? B G 9 C C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_struct_sheet.id AA1
_struct_sheet.type ?
_struct_sheet.number_strands 4
_struct_sheet.details ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? parallel
AA1 2 3 ? anti-parallel
AA1 3 4 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 VAL A 16 ? MET A 19 ? VAL A 352 MET A 355
AA1 2 GLN A 72 ? SER A 76 ? GLN A 408 SER A 412
AA1 3 PHE A 63 ? VAL A 69 ? PHE A 399 VAL A 405
AA1 4 VAL A 51 ? GLN A 56 ? VAL A 387 GLN A 392
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 N ILE A 17 ? N ILE A 353 O LYS A 73 ? O LYS A 409
AA1 2 3 O TYR A 74 ? O TYR A 410 N VAL A 67 ? N VAL A 403
AA1 3 4 O THR A 68 ? O THR A 404 N VAL A 51 ? N VAL A 387
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 P B C 1 ? ? OP3 B C 1 ? ? 1.476 1.607 -0.131 0.012 N
2 1 P C C 1 ? ? OP3 C C 1 ? ? 1.480 1.607 -0.127 0.012 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 OP1 B C 1 ? ? P B C 1 ? ? OP2 B C 1 ? ? 110.19 119.60 -9.41 1.50 N
2 1 OP1 C C 1 ? ? P C C 1 ? ? OP2 C C 1 ? ? 109.88 119.60 -9.72 1.50 N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ALA A 384 ? ? -41.73 -104.31
2 1 GLN A 385 ? ? -175.91 138.85
3 1 LEU A 395 ? ? -64.06 -80.17
#
loop_
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
_pdbx_refine_tls.S[3][3]
'X-RAY DIFFRACTION' 1 ? refined -12.7472 -11.0038 5.8448 -0.0181 0.0703 -0.2308 0.0449 -0.1095 0.0555 6.6991 8.3154 5.6330
2.6646 -1.2742 -2.4712 0.0000 0.4908 -0.1577 0.1106 0.5442 -0.3081 0.2577 -0.5442 -0.5442
'X-RAY DIFFRACTION' 2 ? refined -13.9277 -27.7193 16.0777 0.0133 0.1798 0.0654 -0.0442 -0.1520 0.0709 0.0000 0.1894 0.8125
0.5523 -2.9104 0.3085 -0.1997 -0.1434 -0.4671 0.5442 0.2100 -0.3904 0.5442 0.2563 -0.0103
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.selection_details
'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '{ A|* }'
'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '{ B|* },{ C|* }'
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A MET 337 ? A MET 1
2 1 Y 1 A THR 338 ? A THR 2
3 1 Y 1 A SER 339 ? A SER 3
4 1 Y 1 A GLU 340 ? A GLU 4
5 1 Y 1 A GLN 341 ? A GLN 5
6 1 Y 1 A THR 342 ? A THR 6
7 1 Y 1 A GLY 343 ? A GLY 7
8 1 Y 1 A GLU 344 ? A GLU 8
9 1 Y 1 A PRO 345 ? A PRO 9
10 1 Y 1 A ALA 346 ? A ALA 10
11 1 Y 1 A GLU 347 ? A GLU 11
12 1 Y 1 A ASP 348 ? A ASP 12
13 1 Y 1 A THR 349 ? A THR 13
14 1 Y 1 A SER 350 ? A SER 14
15 1 Y 1 A LEU 441 ? A LEU 105
16 1 Y 1 A GLY 442 ? A GLY 106
17 1 Y 1 A GLU 443 ? A GLU 107
18 1 Y 1 A GLU 444 ? A GLU 108
19 1 Y 1 A SER 445 ? A SER 109
20 1 Y 1 A PRO 446 ? A PRO 110
21 1 Y 1 A SER 447 ? A SER 111
22 1 Y 1 A LEU 448 ? A LEU 112
23 1 Y 1 A HIS 449 ? A HIS 113
24 1 Y 1 A LYS 450 ? A LYS 114
25 1 Y 1 A HIS 451 ? A HIS 115
26 1 Y 1 A HIS 452 ? A HIS 116
27 1 Y 1 A HIS 453 ? A HIS 117
28 1 Y 1 A HIS 454 ? A HIS 118
29 1 Y 1 A HIS 455 ? A HIS 119
30 1 Y 1 A HIS 456 ? A HIS 120
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A OP3 O N N 1
A P P N N 2
A OP1 O N N 3
A OP2 O N N 4
A "O5'" O N N 5
A "C5'" C N N 6
A "C4'" C N R 7
A "O4'" O N N 8
A "C3'" C N S 9
A "O3'" O N N 10
A "C2'" C N R 11
A "O2'" O N N 12
A "C1'" C N R 13
A N9 N Y N 14
A C8 C Y N 15
A N7 N Y N 16
A C5 C Y N 17
A C6 C Y N 18
A N6 N N N 19
A N1 N Y N 20
A C2 C Y N 21
A N3 N Y N 22
A C4 C Y N 23
A HOP3 H N N 24
A HOP2 H N N 25
A "H5'" H N N 26
A "H5''" H N N 27
A "H4'" H N N 28
A "H3'" H N N 29
A "HO3'" H N N 30
A "H2'" H N N 31
A "HO2'" H N N 32
A "H1'" H N N 33
A H8 H N N 34
A H61 H N N 35
A H62 H N N 36
A H2 H N N 37
ALA N N N N 38
ALA CA C N S 39
ALA C C N N 40
ALA O O N N 41
ALA CB C N N 42
ALA OXT O N N 43
ALA H H N N 44
ALA H2 H N N 45
ALA HA H N N 46
ALA HB1 H N N 47
ALA HB2 H N N 48
ALA HB3 H N N 49
ALA HXT H N N 50
ARG N N N N 51
ARG CA C N S 52
ARG C C N N 53
ARG O O N N 54
ARG CB C N N 55
ARG CG C N N 56
ARG CD C N N 57
ARG NE N N N 58
ARG CZ C N N 59
ARG NH1 N N N 60
ARG NH2 N N N 61
ARG OXT O N N 62
ARG H H N N 63
ARG H2 H N N 64
ARG HA H N N 65
ARG HB2 H N N 66
ARG HB3 H N N 67
ARG HG2 H N N 68
ARG HG3 H N N 69
ARG HD2 H N N 70
ARG HD3 H N N 71
ARG HE H N N 72
ARG HH11 H N N 73
ARG HH12 H N N 74
ARG HH21 H N N 75
ARG HH22 H N N 76
ARG HXT H N N 77
ASP N N N N 78
ASP CA C N S 79
ASP C C N N 80
ASP O O N N 81
ASP CB C N N 82
ASP CG C N N 83
ASP OD1 O N N 84
ASP OD2 O N N 85
ASP OXT O N N 86
ASP H H N N 87
ASP H2 H N N 88
ASP HA H N N 89
ASP HB2 H N N 90
ASP HB3 H N N 91
ASP HD2 H N N 92
ASP HXT H N N 93
C OP3 O N N 94
C P P N N 95
C OP1 O N N 96
C OP2 O N N 97
C "O5'" O N N 98
C "C5'" C N N 99
C "C4'" C N R 100
C "O4'" O N N 101
C "C3'" C N S 102
C "O3'" O N N 103
C "C2'" C N R 104
C "O2'" O N N 105
C "C1'" C N R 106
C N1 N N N 107
C C2 C N N 108
C O2 O N N 109
C N3 N N N 110
C C4 C N N 111
C N4 N N N 112
C C5 C N N 113
C C6 C N N 114
C HOP3 H N N 115
C HOP2 H N N 116
C "H5'" H N N 117
C "H5''" H N N 118
C "H4'" H N N 119
C "H3'" H N N 120
C "HO3'" H N N 121
C "H2'" H N N 122
C "HO2'" H N N 123
C "H1'" H N N 124
C H41 H N N 125
C H42 H N N 126
C H5 H N N 127
C H6 H N N 128
CYS N N N N 129
CYS CA C N R 130
CYS C C N N 131
CYS O O N N 132
CYS CB C N N 133
CYS SG S N N 134
CYS OXT O N N 135
CYS H H N N 136
CYS H2 H N N 137
CYS HA H N N 138
CYS HB2 H N N 139
CYS HB3 H N N 140
CYS HG H N N 141
CYS HXT H N N 142
G OP3 O N N 143
G P P N N 144
G OP1 O N N 145
G OP2 O N N 146
G "O5'" O N N 147
G "C5'" C N N 148
G "C4'" C N R 149
G "O4'" O N N 150
G "C3'" C N S 151
G "O3'" O N N 152
G "C2'" C N R 153
G "O2'" O N N 154
G "C1'" C N R 155
G N9 N Y N 156
G C8 C Y N 157
G N7 N Y N 158
G C5 C Y N 159
G C6 C N N 160
G O6 O N N 161
G N1 N N N 162
G C2 C N N 163
G N2 N N N 164
G N3 N N N 165
G C4 C Y N 166
G HOP3 H N N 167
G HOP2 H N N 168
G "H5'" H N N 169
G "H5''" H N N 170
G "H4'" H N N 171
G "H3'" H N N 172
G "HO3'" H N N 173
G "H2'" H N N 174
G "HO2'" H N N 175
G "H1'" H N N 176
G H8 H N N 177
G H1 H N N 178
G H21 H N N 179
G H22 H N N 180
GLN N N N N 181
GLN CA C N S 182
GLN C C N N 183
GLN O O N N 184
GLN CB C N N 185
GLN CG C N N 186
GLN CD C N N 187
GLN OE1 O N N 188
GLN NE2 N N N 189
GLN OXT O N N 190
GLN H H N N 191
GLN H2 H N N 192
GLN HA H N N 193
GLN HB2 H N N 194
GLN HB3 H N N 195
GLN HG2 H N N 196
GLN HG3 H N N 197
GLN HE21 H N N 198
GLN HE22 H N N 199
GLN HXT H N N 200
GLU N N N N 201
GLU CA C N S 202
GLU C C N N 203
GLU O O N N 204
GLU CB C N N 205
GLU CG C N N 206
GLU CD C N N 207
GLU OE1 O N N 208
GLU OE2 O N N 209
GLU OXT O N N 210
GLU H H N N 211
GLU H2 H N N 212
GLU HA H N N 213
GLU HB2 H N N 214
GLU HB3 H N N 215
GLU HG2 H N N 216
GLU HG3 H N N 217
GLU HE2 H N N 218
GLU HXT H N N 219
GLY N N N N 220
GLY CA C N N 221
GLY C C N N 222
GLY O O N N 223
GLY OXT O N N 224
GLY H H N N 225
GLY H2 H N N 226
GLY HA2 H N N 227
GLY HA3 H N N 228
GLY HXT H N N 229
HIS N N N N 230
HIS CA C N S 231
HIS C C N N 232
HIS O O N N 233
HIS CB C N N 234
HIS CG C Y N 235
HIS ND1 N Y N 236
HIS CD2 C Y N 237
HIS CE1 C Y N 238
HIS NE2 N Y N 239
HIS OXT O N N 240
HIS H H N N 241
HIS H2 H N N 242
HIS HA H N N 243
HIS HB2 H N N 244
HIS HB3 H N N 245
HIS HD1 H N N 246
HIS HD2 H N N 247
HIS HE1 H N N 248
HIS HE2 H N N 249
HIS HXT H N N 250
ILE N N N N 251
ILE CA C N S 252
ILE C C N N 253
ILE O O N N 254
ILE CB C N S 255
ILE CG1 C N N 256
ILE CG2 C N N 257
ILE CD1 C N N 258
ILE OXT O N N 259
ILE H H N N 260
ILE H2 H N N 261
ILE HA H N N 262
ILE HB H N N 263
ILE HG12 H N N 264
ILE HG13 H N N 265
ILE HG21 H N N 266
ILE HG22 H N N 267
ILE HG23 H N N 268
ILE HD11 H N N 269
ILE HD12 H N N 270
ILE HD13 H N N 271
ILE HXT H N N 272
LEU N N N N 273
LEU CA C N S 274
LEU C C N N 275
LEU O O N N 276
LEU CB C N N 277
LEU CG C N N 278
LEU CD1 C N N 279
LEU CD2 C N N 280
LEU OXT O N N 281
LEU H H N N 282
LEU H2 H N N 283
LEU HA H N N 284
LEU HB2 H N N 285
LEU HB3 H N N 286
LEU HG H N N 287
LEU HD11 H N N 288
LEU HD12 H N N 289
LEU HD13 H N N 290
LEU HD21 H N N 291
LEU HD22 H N N 292
LEU HD23 H N N 293
LEU HXT H N N 294
LYS N N N N 295
LYS CA C N S 296
LYS C C N N 297
LYS O O N N 298
LYS CB C N N 299
LYS CG C N N 300
LYS CD C N N 301
LYS CE C N N 302
LYS NZ N N N 303
LYS OXT O N N 304
LYS H H N N 305
LYS H2 H N N 306
LYS HA H N N 307
LYS HB2 H N N 308
LYS HB3 H N N 309
LYS HG2 H N N 310
LYS HG3 H N N 311
LYS HD2 H N N 312
LYS HD3 H N N 313
LYS HE2 H N N 314
LYS HE3 H N N 315
LYS HZ1 H N N 316
LYS HZ2 H N N 317
LYS HZ3 H N N 318
LYS HXT H N N 319
MET N N N N 320
MET CA C N S 321
MET C C N N 322
MET O O N N 323
MET CB C N N 324
MET CG C N N 325
MET SD S N N 326
MET CE C N N 327
MET OXT O N N 328
MET H H N N 329
MET H2 H N N 330
MET HA H N N 331
MET HB2 H N N 332
MET HB3 H N N 333
MET HG2 H N N 334
MET HG3 H N N 335
MET HE1 H N N 336
MET HE2 H N N 337
MET HE3 H N N 338
MET HXT H N N 339
PHE N N N N 340
PHE CA C N S 341
PHE C C N N 342
PHE O O N N 343
PHE CB C N N 344
PHE CG C Y N 345
PHE CD1 C Y N 346
PHE CD2 C Y N 347
PHE CE1 C Y N 348
PHE CE2 C Y N 349
PHE CZ C Y N 350
PHE OXT O N N 351
PHE H H N N 352
PHE H2 H N N 353
PHE HA H N N 354
PHE HB2 H N N 355
PHE HB3 H N N 356
PHE HD1 H N N 357
PHE HD2 H N N 358
PHE HE1 H N N 359
PHE HE2 H N N 360
PHE HZ H N N 361
PHE HXT H N N 362
PRO N N N N 363
PRO CA C N S 364
PRO C C N N 365
PRO O O N N 366
PRO CB C N N 367
PRO CG C N N 368
PRO CD C N N 369
PRO OXT O N N 370
PRO H H N N 371
PRO HA H N N 372
PRO HB2 H N N 373
PRO HB3 H N N 374
PRO HG2 H N N 375
PRO HG3 H N N 376
PRO HD2 H N N 377
PRO HD3 H N N 378
PRO HXT H N N 379
SER N N N N 380
SER CA C N S 381
SER C C N N 382
SER O O N N 383
SER CB C N N 384
SER OG O N N 385
SER OXT O N N 386
SER H H N N 387
SER H2 H N N 388
SER HA H N N 389
SER HB2 H N N 390
SER HB3 H N N 391
SER HG H N N 392
SER HXT H N N 393
THR N N N N 394
THR CA C N S 395
THR C C N N 396
THR O O N N 397
THR CB C N R 398
THR OG1 O N N 399
THR CG2 C N N 400
THR OXT O N N 401
THR H H N N 402
THR H2 H N N 403
THR HA H N N 404
THR HB H N N 405
THR HG1 H N N 406
THR HG21 H N N 407
THR HG22 H N N 408
THR HG23 H N N 409
THR HXT H N N 410
TRP N N N N 411
TRP CA C N S 412
TRP C C N N 413
TRP O O N N 414
TRP CB C N N 415
TRP CG C Y N 416
TRP CD1 C Y N 417
TRP CD2 C Y N 418
TRP NE1 N Y N 419
TRP CE2 C Y N 420
TRP CE3 C Y N 421
TRP CZ2 C Y N 422
TRP CZ3 C Y N 423
TRP CH2 C Y N 424
TRP OXT O N N 425
TRP H H N N 426
TRP H2 H N N 427
TRP HA H N N 428
TRP HB2 H N N 429
TRP HB3 H N N 430
TRP HD1 H N N 431
TRP HE1 H N N 432
TRP HE3 H N N 433
TRP HZ2 H N N 434
TRP HZ3 H N N 435
TRP HH2 H N N 436
TRP HXT H N N 437
TYR N N N N 438
TYR CA C N S 439
TYR C C N N 440
TYR O O N N 441
TYR CB C N N 442
TYR CG C Y N 443
TYR CD1 C Y N 444
TYR CD2 C Y N 445
TYR CE1 C Y N 446
TYR CE2 C Y N 447
TYR CZ C Y N 448
TYR OH O N N 449
TYR OXT O N N 450
TYR H H N N 451
TYR H2 H N N 452
TYR HA H N N 453
TYR HB2 H N N 454
TYR HB3 H N N 455
TYR HD1 H N N 456
TYR HD2 H N N 457
TYR HE1 H N N 458
TYR HE2 H N N 459
TYR HH H N N 460
TYR HXT H N N 461
U OP3 O N N 462
U P P N N 463
U OP1 O N N 464
U OP2 O N N 465
U "O5'" O N N 466
U "C5'" C N N 467
U "C4'" C N R 468
U "O4'" O N N 469
U "C3'" C N S 470
U "O3'" O N N 471
U "C2'" C N R 472
U "O2'" O N N 473
U "C1'" C N R 474
U N1 N N N 475
U C2 C N N 476
U O2 O N N 477
U N3 N N N 478
U C4 C N N 479
U O4 O N N 480
U C5 C N N 481
U C6 C N N 482
U HOP3 H N N 483
U HOP2 H N N 484
U "H5'" H N N 485
U "H5''" H N N 486
U "H4'" H N N 487
U "H3'" H N N 488
U "HO3'" H N N 489
U "H2'" H N N 490
U "HO2'" H N N 491
U "H1'" H N N 492
U H3 H N N 493
U H5 H N N 494
U H6 H N N 495
VAL N N N N 496
VAL CA C N S 497
VAL C C N N 498
VAL O O N N 499
VAL CB C N N 500
VAL CG1 C N N 501
VAL CG2 C N N 502
VAL OXT O N N 503
VAL H H N N 504
VAL H2 H N N 505
VAL HA H N N 506
VAL HB H N N 507
VAL HG11 H N N 508
VAL HG12 H N N 509
VAL HG13 H N N 510
VAL HG21 H N N 511
VAL HG22 H N N 512
VAL HG23 H N N 513
VAL HXT H N N 514
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A OP3 P sing N N 1
A OP3 HOP3 sing N N 2
A P OP1 doub N N 3
A P OP2 sing N N 4
A P "O5'" sing N N 5
A OP2 HOP2 sing N N 6
A "O5'" "C5'" sing N N 7
A "C5'" "C4'" sing N N 8
A "C5'" "H5'" sing N N 9
A "C5'" "H5''" sing N N 10
A "C4'" "O4'" sing N N 11
A "C4'" "C3'" sing N N 12
A "C4'" "H4'" sing N N 13
A "O4'" "C1'" sing N N 14
A "C3'" "O3'" sing N N 15
A "C3'" "C2'" sing N N 16
A "C3'" "H3'" sing N N 17
A "O3'" "HO3'" sing N N 18
A "C2'" "O2'" sing N N 19
A "C2'" "C1'" sing N N 20
A "C2'" "H2'" sing N N 21
A "O2'" "HO2'" sing N N 22
A "C1'" N9 sing N N 23
A "C1'" "H1'" sing N N 24
A N9 C8 sing Y N 25
A N9 C4 sing Y N 26
A C8 N7 doub Y N 27
A C8 H8 sing N N 28
A N7 C5 sing Y N 29
A C5 C6 sing Y N 30
A C5 C4 doub Y N 31
A C6 N6 sing N N 32
A C6 N1 doub Y N 33
A N6 H61 sing N N 34
A N6 H62 sing N N 35
A N1 C2 sing Y N 36
A C2 N3 doub Y N 37
A C2 H2 sing N N 38
A N3 C4 sing Y N 39
ALA N CA sing N N 40
ALA N H sing N N 41
ALA N H2 sing N N 42
ALA CA C sing N N 43
ALA CA CB sing N N 44
ALA CA HA sing N N 45
ALA C O doub N N 46
ALA C OXT sing N N 47
ALA CB HB1 sing N N 48
ALA CB HB2 sing N N 49
ALA CB HB3 sing N N 50
ALA OXT HXT sing N N 51
ARG N CA sing N N 52
ARG N H sing N N 53
ARG N H2 sing N N 54
ARG CA C sing N N 55
ARG CA CB sing N N 56
ARG CA HA sing N N 57
ARG C O doub N N 58
ARG C OXT sing N N 59
ARG CB CG sing N N 60
ARG CB HB2 sing N N 61
ARG CB HB3 sing N N 62
ARG CG CD sing N N 63
ARG CG HG2 sing N N 64
ARG CG HG3 sing N N 65
ARG CD NE sing N N 66
ARG CD HD2 sing N N 67
ARG CD HD3 sing N N 68
ARG NE CZ sing N N 69
ARG NE HE sing N N 70
ARG CZ NH1 sing N N 71
ARG CZ NH2 doub N N 72
ARG NH1 HH11 sing N N 73
ARG NH1 HH12 sing N N 74
ARG NH2 HH21 sing N N 75
ARG NH2 HH22 sing N N 76
ARG OXT HXT sing N N 77
ASP N CA sing N N 78
ASP N H sing N N 79
ASP N H2 sing N N 80
ASP CA C sing N N 81
ASP CA CB sing N N 82
ASP CA HA sing N N 83
ASP C O doub N N 84
ASP C OXT sing N N 85
ASP CB CG sing N N 86
ASP CB HB2 sing N N 87
ASP CB HB3 sing N N 88
ASP CG OD1 doub N N 89
ASP CG OD2 sing N N 90
ASP OD2 HD2 sing N N 91
ASP OXT HXT sing N N 92
C OP3 P sing N N 93
C OP3 HOP3 sing N N 94
C P OP1 doub N N 95
C P OP2 sing N N 96
C P "O5'" sing N N 97
C OP2 HOP2 sing N N 98
C "O5'" "C5'" sing N N 99
C "C5'" "C4'" sing N N 100
C "C5'" "H5'" sing N N 101
C "C5'" "H5''" sing N N 102
C "C4'" "O4'" sing N N 103
C "C4'" "C3'" sing N N 104
C "C4'" "H4'" sing N N 105
C "O4'" "C1'" sing N N 106
C "C3'" "O3'" sing N N 107
C "C3'" "C2'" sing N N 108
C "C3'" "H3'" sing N N 109
C "O3'" "HO3'" sing N N 110
C "C2'" "O2'" sing N N 111
C "C2'" "C1'" sing N N 112
C "C2'" "H2'" sing N N 113
C "O2'" "HO2'" sing N N 114
C "C1'" N1 sing N N 115
C "C1'" "H1'" sing N N 116
C N1 C2 sing N N 117
C N1 C6 sing N N 118
C C2 O2 doub N N 119
C C2 N3 sing N N 120
C N3 C4 doub N N 121
C C4 N4 sing N N 122
C C4 C5 sing N N 123
C N4 H41 sing N N 124
C N4 H42 sing N N 125
C C5 C6 doub N N 126
C C5 H5 sing N N 127
C C6 H6 sing N N 128
CYS N CA sing N N 129
CYS N H sing N N 130
CYS N H2 sing N N 131
CYS CA C sing N N 132
CYS CA CB sing N N 133
CYS CA HA sing N N 134
CYS C O doub N N 135
CYS C OXT sing N N 136
CYS CB SG sing N N 137
CYS CB HB2 sing N N 138
CYS CB HB3 sing N N 139
CYS SG HG sing N N 140
CYS OXT HXT sing N N 141
G OP3 P sing N N 142
G OP3 HOP3 sing N N 143
G P OP1 doub N N 144
G P OP2 sing N N 145
G P "O5'" sing N N 146
G OP2 HOP2 sing N N 147
G "O5'" "C5'" sing N N 148
G "C5'" "C4'" sing N N 149
G "C5'" "H5'" sing N N 150
G "C5'" "H5''" sing N N 151
G "C4'" "O4'" sing N N 152
G "C4'" "C3'" sing N N 153
G "C4'" "H4'" sing N N 154
G "O4'" "C1'" sing N N 155
G "C3'" "O3'" sing N N 156
G "C3'" "C2'" sing N N 157
G "C3'" "H3'" sing N N 158
G "O3'" "HO3'" sing N N 159
G "C2'" "O2'" sing N N 160
G "C2'" "C1'" sing N N 161
G "C2'" "H2'" sing N N 162
G "O2'" "HO2'" sing N N 163
G "C1'" N9 sing N N 164
G "C1'" "H1'" sing N N 165
G N9 C8 sing Y N 166
G N9 C4 sing Y N 167
G C8 N7 doub Y N 168
G C8 H8 sing N N 169
G N7 C5 sing Y N 170
G C5 C6 sing N N 171
G C5 C4 doub Y N 172
G C6 O6 doub N N 173
G C6 N1 sing N N 174
G N1 C2 sing N N 175
G N1 H1 sing N N 176
G C2 N2 sing N N 177
G C2 N3 doub N N 178
G N2 H21 sing N N 179
G N2 H22 sing N N 180
G N3 C4 sing N N 181
GLN N CA sing N N 182
GLN N H sing N N 183
GLN N H2 sing N N 184
GLN CA C sing N N 185
GLN CA CB sing N N 186
GLN CA HA sing N N 187
GLN C O doub N N 188
GLN C OXT sing N N 189
GLN CB CG sing N N 190
GLN CB HB2 sing N N 191
GLN CB HB3 sing N N 192
GLN CG CD sing N N 193
GLN CG HG2 sing N N 194
GLN CG HG3 sing N N 195
GLN CD OE1 doub N N 196
GLN CD NE2 sing N N 197
GLN NE2 HE21 sing N N 198
GLN NE2 HE22 sing N N 199
GLN OXT HXT sing N N 200
GLU N CA sing N N 201
GLU N H sing N N 202
GLU N H2 sing N N 203
GLU CA C sing N N 204
GLU CA CB sing N N 205
GLU CA HA sing N N 206
GLU C O doub N N 207
GLU C OXT sing N N 208
GLU CB CG sing N N 209
GLU CB HB2 sing N N 210
GLU CB HB3 sing N N 211
GLU CG CD sing N N 212
GLU CG HG2 sing N N 213
GLU CG HG3 sing N N 214
GLU CD OE1 doub N N 215
GLU CD OE2 sing N N 216
GLU OE2 HE2 sing N N 217
GLU OXT HXT sing N N 218
GLY N CA sing N N 219
GLY N H sing N N 220
GLY N H2 sing N N 221
GLY CA C sing N N 222
GLY CA HA2 sing N N 223
GLY CA HA3 sing N N 224
GLY C O doub N N 225
GLY C OXT sing N N 226
GLY OXT HXT sing N N 227
HIS N CA sing N N 228
HIS N H sing N N 229
HIS N H2 sing N N 230
HIS CA C sing N N 231
HIS CA CB sing N N 232
HIS CA HA sing N N 233
HIS C O doub N N 234
HIS C OXT sing N N 235
HIS CB CG sing N N 236
HIS CB HB2 sing N N 237
HIS CB HB3 sing N N 238
HIS CG ND1 sing Y N 239
HIS CG CD2 doub Y N 240
HIS ND1 CE1 doub Y N 241
HIS ND1 HD1 sing N N 242
HIS CD2 NE2 sing Y N 243
HIS CD2 HD2 sing N N 244
HIS CE1 NE2 sing Y N 245
HIS CE1 HE1 sing N N 246
HIS NE2 HE2 sing N N 247
HIS OXT HXT sing N N 248
ILE N CA sing N N 249
ILE N H sing N N 250
ILE N H2 sing N N 251
ILE CA C sing N N 252
ILE CA CB sing N N 253
ILE CA HA sing N N 254
ILE C O doub N N 255
ILE C OXT sing N N 256
ILE CB CG1 sing N N 257
ILE CB CG2 sing N N 258
ILE CB HB sing N N 259
ILE CG1 CD1 sing N N 260
ILE CG1 HG12 sing N N 261
ILE CG1 HG13 sing N N 262
ILE CG2 HG21 sing N N 263
ILE CG2 HG22 sing N N 264
ILE CG2 HG23 sing N N 265
ILE CD1 HD11 sing N N 266
ILE CD1 HD12 sing N N 267
ILE CD1 HD13 sing N N 268
ILE OXT HXT sing N N 269
LEU N CA sing N N 270
LEU N H sing N N 271
LEU N H2 sing N N 272
LEU CA C sing N N 273
LEU CA CB sing N N 274
LEU CA HA sing N N 275
LEU C O doub N N 276
LEU C OXT sing N N 277
LEU CB CG sing N N 278
LEU CB HB2 sing N N 279
LEU CB HB3 sing N N 280
LEU CG CD1 sing N N 281
LEU CG CD2 sing N N 282
LEU CG HG sing N N 283
LEU CD1 HD11 sing N N 284
LEU CD1 HD12 sing N N 285
LEU CD1 HD13 sing N N 286
LEU CD2 HD21 sing N N 287
LEU CD2 HD22 sing N N 288
LEU CD2 HD23 sing N N 289
LEU OXT HXT sing N N 290
LYS N CA sing N N 291
LYS N H sing N N 292
LYS N H2 sing N N 293
LYS CA C sing N N 294
LYS CA CB sing N N 295
LYS CA HA sing N N 296
LYS C O doub N N 297
LYS C OXT sing N N 298
LYS CB CG sing N N 299
LYS CB HB2 sing N N 300
LYS CB HB3 sing N N 301
LYS CG CD sing N N 302
LYS CG HG2 sing N N 303
LYS CG HG3 sing N N 304
LYS CD CE sing N N 305
LYS CD HD2 sing N N 306
LYS CD HD3 sing N N 307
LYS CE NZ sing N N 308
LYS CE HE2 sing N N 309
LYS CE HE3 sing N N 310
LYS NZ HZ1 sing N N 311
LYS NZ HZ2 sing N N 312
LYS NZ HZ3 sing N N 313
LYS OXT HXT sing N N 314
MET N CA sing N N 315
MET N H sing N N 316
MET N H2 sing N N 317
MET CA C sing N N 318
MET CA CB sing N N 319
MET CA HA sing N N 320
MET C O doub N N 321
MET C OXT sing N N 322
MET CB CG sing N N 323
MET CB HB2 sing N N 324
MET CB HB3 sing N N 325
MET CG SD sing N N 326
MET CG HG2 sing N N 327
MET CG HG3 sing N N 328
MET SD CE sing N N 329
MET CE HE1 sing N N 330
MET CE HE2 sing N N 331
MET CE HE3 sing N N 332
MET OXT HXT sing N N 333
PHE N CA sing N N 334
PHE N H sing N N 335
PHE N H2 sing N N 336
PHE CA C sing N N 337
PHE CA CB sing N N 338
PHE CA HA sing N N 339
PHE C O doub N N 340
PHE C OXT sing N N 341
PHE CB CG sing N N 342
PHE CB HB2 sing N N 343
PHE CB HB3 sing N N 344
PHE CG CD1 doub Y N 345
PHE CG CD2 sing Y N 346
PHE CD1 CE1 sing Y N 347
PHE CD1 HD1 sing N N 348
PHE CD2 CE2 doub Y N 349
PHE CD2 HD2 sing N N 350
PHE CE1 CZ doub Y N 351
PHE CE1 HE1 sing N N 352
PHE CE2 CZ sing Y N 353
PHE CE2 HE2 sing N N 354
PHE CZ HZ sing N N 355
PHE OXT HXT sing N N 356
PRO N CA sing N N 357
PRO N CD sing N N 358
PRO N H sing N N 359
PRO CA C sing N N 360
PRO CA CB sing N N 361
PRO CA HA sing N N 362
PRO C O doub N N 363
PRO C OXT sing N N 364
PRO CB CG sing N N 365
PRO CB HB2 sing N N 366
PRO CB HB3 sing N N 367
PRO CG CD sing N N 368
PRO CG HG2 sing N N 369
PRO CG HG3 sing N N 370
PRO CD HD2 sing N N 371
PRO CD HD3 sing N N 372
PRO OXT HXT sing N N 373
SER N CA sing N N 374
SER N H sing N N 375
SER N H2 sing N N 376
SER CA C sing N N 377
SER CA CB sing N N 378
SER CA HA sing N N 379
SER C O doub N N 380
SER C OXT sing N N 381
SER CB OG sing N N 382
SER CB HB2 sing N N 383
SER CB HB3 sing N N 384
SER OG HG sing N N 385
SER OXT HXT sing N N 386
THR N CA sing N N 387
THR N H sing N N 388
THR N H2 sing N N 389
THR CA C sing N N 390
THR CA CB sing N N 391
THR CA HA sing N N 392
THR C O doub N N 393
THR C OXT sing N N 394
THR CB OG1 sing N N 395
THR CB CG2 sing N N 396
THR CB HB sing N N 397
THR OG1 HG1 sing N N 398
THR CG2 HG21 sing N N 399
THR CG2 HG22 sing N N 400
THR CG2 HG23 sing N N 401
THR OXT HXT sing N N 402
TRP N CA sing N N 403
TRP N H sing N N 404
TRP N H2 sing N N 405
TRP CA C sing N N 406
TRP CA CB sing N N 407
TRP CA HA sing N N 408
TRP C O doub N N 409
TRP C OXT sing N N 410
TRP CB CG sing N N 411
TRP CB HB2 sing N N 412
TRP CB HB3 sing N N 413
TRP CG CD1 doub Y N 414
TRP CG CD2 sing Y N 415
TRP CD1 NE1 sing Y N 416
TRP CD1 HD1 sing N N 417
TRP CD2 CE2 doub Y N 418
TRP CD2 CE3 sing Y N 419
TRP NE1 CE2 sing Y N 420
TRP NE1 HE1 sing N N 421
TRP CE2 CZ2 sing Y N 422
TRP CE3 CZ3 doub Y N 423
TRP CE3 HE3 sing N N 424
TRP CZ2 CH2 doub Y N 425
TRP CZ2 HZ2 sing N N 426
TRP CZ3 CH2 sing Y N 427
TRP CZ3 HZ3 sing N N 428
TRP CH2 HH2 sing N N 429
TRP OXT HXT sing N N 430
TYR N CA sing N N 431
TYR N H sing N N 432
TYR N H2 sing N N 433
TYR CA C sing N N 434
TYR CA CB sing N N 435
TYR CA HA sing N N 436
TYR C O doub N N 437
TYR C OXT sing N N 438
TYR CB CG sing N N 439
TYR CB HB2 sing N N 440
TYR CB HB3 sing N N 441
TYR CG CD1 doub Y N 442
TYR CG CD2 sing Y N 443
TYR CD1 CE1 sing Y N 444
TYR CD1 HD1 sing N N 445
TYR CD2 CE2 doub Y N 446
TYR CD2 HD2 sing N N 447
TYR CE1 CZ doub Y N 448
TYR CE1 HE1 sing N N 449
TYR CE2 CZ sing Y N 450
TYR CE2 HE2 sing N N 451
TYR CZ OH sing N N 452
TYR OH HH sing N N 453
TYR OXT HXT sing N N 454
U OP3 P sing N N 455
U OP3 HOP3 sing N N 456
U P OP1 doub N N 457
U P OP2 sing N N 458
U P "O5'" sing N N 459
U OP2 HOP2 sing N N 460
U "O5'" "C5'" sing N N 461
U "C5'" "C4'" sing N N 462
U "C5'" "H5'" sing N N 463
U "C5'" "H5''" sing N N 464
U "C4'" "O4'" sing N N 465
U "C4'" "C3'" sing N N 466
U "C4'" "H4'" sing N N 467
U "O4'" "C1'" sing N N 468
U "C3'" "O3'" sing N N 469
U "C3'" "C2'" sing N N 470
U "C3'" "H3'" sing N N 471
U "O3'" "HO3'" sing N N 472
U "C2'" "O2'" sing N N 473
U "C2'" "C1'" sing N N 474
U "C2'" "H2'" sing N N 475
U "O2'" "HO2'" sing N N 476
U "C1'" N1 sing N N 477
U "C1'" "H1'" sing N N 478
U N1 C2 sing N N 479
U N1 C6 sing N N 480
U C2 O2 doub N N 481
U C2 N3 sing N N 482
U N3 C4 sing N N 483
U N3 H3 sing N N 484
U C4 O4 doub N N 485
U C4 C5 sing N N 486
U C5 C6 doub N N 487
U C5 H5 sing N N 488
U C6 H6 sing N N 489
VAL N CA sing N N 490
VAL N H sing N N 491
VAL N H2 sing N N 492
VAL CA C sing N N 493
VAL CA CB sing N N 494
VAL CA HA sing N N 495
VAL C O doub N N 496
VAL C OXT sing N N 497
VAL CB CG1 sing N N 498
VAL CB CG2 sing N N 499
VAL CB HB sing N N 500
VAL CG1 HG11 sing N N 501
VAL CG1 HG12 sing N N 502
VAL CG1 HG13 sing N N 503
VAL CG2 HG21 sing N N 504
VAL CG2 HG22 sing N N 505
VAL CG2 HG23 sing N N 506
VAL OXT HXT sing N N 507
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
5OC6 'double helix'
5OC6 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 B C 1 1_555 C G 9 1_555 -0.375 -0.002 0.301 -9.413 -10.979 0.298 1 B_C1:G9_C B 1 ? C 9 ? 19 1
1 B G 2 1_555 C C 8 1_555 0.777 -0.192 -0.410 -9.314 -12.653 -0.298 2 B_G2:C8_C B 2 ? C 8 ? 19 1
1 B A 3 1_555 C U 7 1_555 -0.076 -0.013 0.396 0.188 -11.564 3.836 3 B_A3:U7_C B 3 ? C 7 ? 20 1
1 B A 4 1_555 C U 6 1_555 0.341 -0.063 -0.414 -11.464 -24.403 -5.065 4 B_A4:U6_C B 4 ? C 6 ? 20 1
1 B U 6 1_555 C A 4 1_555 -1.351 0.064 -0.952 15.476 -12.497 -14.106 5 B_U6:A4_C B 6 ? C 4 ? 20 1
1 B U 7 1_555 C A 3 1_555 -0.919 -0.013 -0.245 6.539 -8.775 3.258 6 B_U7:A3_C B 7 ? C 3 ? 20 1
1 B C 8 1_555 C G 2 1_555 -0.737 0.379 -0.125 8.967 -19.616 12.576 7 B_C8:G2_C B 8 ? C 2 ? 19 1
1 B G 9 1_555 C C 1 1_555 0.422 -0.187 -0.602 -12.067 -15.432 1.350 8 B_G9:C1_C B 9 ? C 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 B C 1 1_555 C G 9 1_555 B G 2 1_555 C C 8 1_555 -0.066 -0.782 3.277 4.058 8.004 36.697 -2.219 0.615 3.023 12.485 -6.329
37.742 1 BB_C1G2:C8G9_CC B 1 ? C 9 ? B 2 ? C 8 ?
1 B G 2 1_555 C C 8 1_555 B A 3 1_555 C U 7 1_555 0.314 -1.406 2.897 -4.556 2.171 27.968 -3.295 -1.543 2.699 4.446 9.331
28.410 2 BB_G2A3:U7C8_CC B 2 ? C 8 ? B 3 ? C 7 ?
1 B A 3 1_555 C U 7 1_555 B A 4 1_555 C U 6 1_555 -0.352 -1.596 3.491 5.827 9.225 35.533 -3.742 1.333 2.909 14.695 -9.281
37.118 3 BB_A3A4:U6U7_CC B 3 ? C 7 ? B 4 ? C 6 ?
1 B A 4 1_555 C U 6 1_555 B U 6 1_555 C A 4 1_555 -0.750 -3.731 5.590 -2.921 25.921 51.874 -5.946 0.544 3.546 27.731 3.125
57.655 4 BB_A4U6:A4U6_CC B 4 ? C 6 ? B 6 ? C 4 ?
1 B U 6 1_555 C A 4 1_555 B U 7 1_555 C A 3 1_555 0.818 -1.551 3.480 -7.266 10.826 33.940 -3.962 -2.301 2.654 17.754 11.916
36.290 5 BB_U6U7:A3A4_CC B 6 ? C 4 ? B 7 ? C 3 ?
1 B U 7 1_555 C A 3 1_555 B C 8 1_555 C G 2 1_555 0.753 -1.683 3.161 0.337 8.467 31.344 -4.355 -1.295 2.636 15.324 -0.610
32.441 6 BB_U7C8:G2A3_CC B 7 ? C 3 ? B 8 ? C 2 ?
1 B C 8 1_555 C G 2 1_555 B G 9 1_555 C C 1 1_555 -1.183 -0.897 3.758 -1.198 18.170 36.986 -3.452 1.543 3.048 26.746 1.763
41.085 7 BB_C8G9:C1G2_CC B 8 ? C 2 ? B 9 ? C 1 ?
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 4WFT
_pdbx_initial_refinement_model.details ?
#
_atom_sites.entry_id 5OC6
_atom_sites.fract_transf_matrix[1][1] 0.017112
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.008654
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.015011
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
S
#
loop_