HEADER HYDROLASE 03-JUL-17 5OCQ TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF THE KAPPA-CARRAGEENASE FROM TITLE 2 PSEUDOALTEROMONAS CARRAGEENOVORA WITH AN OLIGOTETRASACCHARIDE OF TITLE 3 KAPPA-CARRAGEENAN CAVEAT 5OCQ THR A 38 HAS WRONG CHIRALITY AT ATOM CB COMPND MOL_ID: 1; COMPND 2 MOLECULE: KAPPA-CARRAGEENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.83; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOALTEROMONAS CARRAGEENOVORA; SOURCE 3 ORGANISM_TAXID: 227; SOURCE 4 GENE: CGKA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET20B KEYWDS GLYCOSIDE HYDROLASE, KAPPA-CARRAGEENASE, BETA JELLYROLL, MARINE KEYWDS 2 CARBOHYDRASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CZJZEK,C.LEROUX,T.BERNARD,M.MATARD-MANN,A.JEUDY,G.MICHEL REVDAT 5 17-JAN-24 5OCQ 1 HETSYN LINK REVDAT 4 29-JUL-20 5OCQ 1 REMARK SITE REVDAT 3 13-DEC-17 5OCQ 1 JRNL REVDAT 2 06-DEC-17 5OCQ 1 JRNL REVDAT 1 18-OCT-17 5OCQ 0 JRNL AUTH M.MATARD-MANN,T.BERNARD,C.LEROUX,T.BARBEYRON,R.LAROCQUE, JRNL AUTH 2 A.PRECHOUX,A.JEUDY,M.JAM,P.NYVALL COLLEN,G.MICHEL,M.CZJZEK JRNL TITL STRUCTURAL INSIGHTS INTO MARINE CARBOHYDRATE DEGRADATION BY JRNL TITL 2 FAMILY GH16 KAPPA-CARRAGEENASES. JRNL REF J. BIOL. CHEM. V. 292 19919 2017 JRNL REFN ESSN 1083-351X JRNL PMID 29030427 JRNL DOI 10.1074/JBC.M117.808279 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 70361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5101 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1480 REMARK 3 BIN FREE R VALUE SET COUNT : 293 REMARK 3 BIN FREE R VALUE : 0.2110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4491 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.424 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4842 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4352 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6585 ; 2.378 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10058 ; 2.537 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 552 ; 7.416 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;36.648 ;24.204 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 783 ;13.178 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.019 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 694 ; 0.243 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5383 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1194 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2202 ; 1.436 ; 1.048 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2201 ; 1.431 ; 1.047 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2750 ; 2.132 ; 1.564 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2751 ; 2.135 ; 1.565 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2640 ; 2.603 ; 1.304 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2638 ; 2.597 ; 1.302 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3830 ; 3.821 ; 1.857 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5574 ; 5.763 ; 9.814 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5310 ; 5.324 ; 9.118 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 79.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.18200 REMARK 200 R SYM FOR SHELL (I) : 0.15500 REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1DYP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM CITRATE, 100 MM REMARK 280 CACODYLATE PH6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.30400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.19950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.68200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.19950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.30400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.68200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 298 REMARK 465 ASN A 299 REMARK 465 ASN A 300 REMARK 465 ASN A 301 REMARK 465 LEU A 302 REMARK 465 GLU A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 MET B 25 REMARK 465 ALA B 26 REMARK 465 SER B 27 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 100 O HOH B 501 1.52 REMARK 500 O HOH B 801 O HOH B 815 1.98 REMARK 500 O HOH A 692 O HOH A 737 2.02 REMARK 500 O HOH A 701 O HOH A 740 2.07 REMARK 500 OE1 GLU A 241 O HOH A 501 2.13 REMARK 500 O HOH A 667 O HOH A 711 2.13 REMARK 500 CD GLU A 241 O HOH A 501 2.14 REMARK 500 O HOH B 765 O HOH B 776 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 783 O HOH B 789 3645 1.94 REMARK 500 O HOH A 731 O HOH B 690 3645 1.97 REMARK 500 O HOH A 686 O HOH B 767 3645 2.05 REMARK 500 O HOH A 626 O HOH B 795 3645 2.11 REMARK 500 O HOH A 713 O HOH B 786 3645 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 72 CG GLU A 72 CD 0.097 REMARK 500 GLU A 72 CD GLU A 72 OE2 0.085 REMARK 500 GLU A 88 CD GLU A 88 OE1 0.111 REMARK 500 GLU A 241 CG GLU A 241 CD 0.125 REMARK 500 GLU B 72 CG GLU B 72 CD 0.098 REMARK 500 GLU B 72 CD GLU B 72 OE2 0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 38 OG1 - CB - CG2 ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG A 129 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 217 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 45 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 45 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LYS B 80 CD - CE - NZ ANGL. DEV. = -15.2 DEGREES REMARK 500 LYS B 82 CD - CE - NZ ANGL. DEV. = -15.8 DEGREES REMARK 500 VAL B 103 CA - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG B 129 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 151 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 217 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 217 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 60 82.61 -159.24 REMARK 500 ASN A 122 -75.06 -147.07 REMARK 500 PRO A 211 23.41 -79.77 REMARK 500 TRP A 247 61.45 -112.65 REMARK 500 GLN B 60 84.88 -159.36 REMARK 500 ASN B 122 -74.92 -138.40 REMARK 500 PRO B 211 22.06 -78.14 REMARK 500 TRP B 247 65.20 -117.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 5OCQ A 26 301 UNP P43478 CGKA_PSEVC 26 301 DBREF 5OCQ B 26 301 UNP P43478 CGKA_PSEVC 26 301 SEQADV 5OCQ MET A 25 UNP P43478 INITIATING METHIONINE SEQADV 5OCQ ASP A 168 UNP P43478 GLU 168 ENGINEERED MUTATION SEQADV 5OCQ LEU A 302 UNP P43478 EXPRESSION TAG SEQADV 5OCQ GLU A 303 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS A 304 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS A 305 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS A 306 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS A 307 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS A 308 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS A 309 UNP P43478 EXPRESSION TAG SEQADV 5OCQ MET B 25 UNP P43478 INITIATING METHIONINE SEQADV 5OCQ ASP B 168 UNP P43478 GLU 168 ENGINEERED MUTATION SEQADV 5OCQ LEU B 302 UNP P43478 EXPRESSION TAG SEQADV 5OCQ GLU B 303 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS B 304 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS B 305 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS B 306 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS B 307 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS B 308 UNP P43478 EXPRESSION TAG SEQADV 5OCQ HIS B 309 UNP P43478 EXPRESSION TAG SEQRES 1 A 285 MET ALA SER MET GLN PRO PRO ILE ALA LYS PRO GLY GLU SEQRES 2 A 285 THR TRP ILE LEU GLN ALA LYS ARG SER ASP GLU PHE ASN SEQRES 3 A 285 VAL LYS ASP ALA THR LYS TRP ASN PHE GLN THR GLU ASN SEQRES 4 A 285 TYR GLY VAL TRP SER TRP LYS ASN GLU ASN ALA THR VAL SEQRES 5 A 285 SER ASN GLY LYS LEU LYS LEU THR THR LYS ARG GLU SER SEQRES 6 A 285 HIS GLN ARG THR PHE TRP ASP GLY CYS ASN GLN GLN GLN SEQRES 7 A 285 VAL ALA ASN TYR PRO LEU TYR TYR THR SER GLY VAL ALA SEQRES 8 A 285 LYS SER ARG ALA THR GLY ASN TYR GLY TYR TYR GLU ALA SEQRES 9 A 285 ARG ILE LYS GLY ALA SER THR PHE PRO GLY VAL SER PRO SEQRES 10 A 285 ALA PHE TRP MET TYR SER THR ILE ASP ARG SER LEU THR SEQRES 11 A 285 LYS GLU GLY ASP VAL GLN TYR SER GLU ILE ASP VAL VAL SEQRES 12 A 285 ASP LEU THR GLN LYS SER ALA VAL ARG GLU SER ASP HIS SEQRES 13 A 285 ASP LEU HIS ASN ILE VAL VAL LYS ASN GLY LYS PRO THR SEQRES 14 A 285 TRP MET ARG PRO GLY SER PHE PRO GLN THR ASN HIS ASN SEQRES 15 A 285 GLY TYR HIS LEU PRO PHE ASP PRO ARG ASN ASP PHE HIS SEQRES 16 A 285 THR TYR GLY VAL ASN VAL THR LYS ASP LYS ILE THR TRP SEQRES 17 A 285 TYR VAL ASP GLY GLU ILE VAL GLY GLU LYS ASP ASN LEU SEQRES 18 A 285 TYR TRP HIS ARG GLN MET ASN LEU THR LEU SER GLN GLY SEQRES 19 A 285 LEU ARG ALA PRO HIS THR GLN TRP LYS CYS ASN GLN PHE SEQRES 20 A 285 TYR PRO SER ALA ASN LYS SER ALA GLU GLY PHE PRO THR SEQRES 21 A 285 SER MET GLU VAL ASP TYR VAL ARG THR TRP VAL LYS VAL SEQRES 22 A 285 GLY ASN ASN ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 285 MET ALA SER MET GLN PRO PRO ILE ALA LYS PRO GLY GLU SEQRES 2 B 285 THR TRP ILE LEU GLN ALA LYS ARG SER ASP GLU PHE ASN SEQRES 3 B 285 VAL LYS ASP ALA THR LYS TRP ASN PHE GLN THR GLU ASN SEQRES 4 B 285 TYR GLY VAL TRP SER TRP LYS ASN GLU ASN ALA THR VAL SEQRES 5 B 285 SER ASN GLY LYS LEU LYS LEU THR THR LYS ARG GLU SER SEQRES 6 B 285 HIS GLN ARG THR PHE TRP ASP GLY CYS ASN GLN GLN GLN SEQRES 7 B 285 VAL ALA ASN TYR PRO LEU TYR TYR THR SER GLY VAL ALA SEQRES 8 B 285 LYS SER ARG ALA THR GLY ASN TYR GLY TYR TYR GLU ALA SEQRES 9 B 285 ARG ILE LYS GLY ALA SER THR PHE PRO GLY VAL SER PRO SEQRES 10 B 285 ALA PHE TRP MET TYR SER THR ILE ASP ARG SER LEU THR SEQRES 11 B 285 LYS GLU GLY ASP VAL GLN TYR SER GLU ILE ASP VAL VAL SEQRES 12 B 285 ASP LEU THR GLN LYS SER ALA VAL ARG GLU SER ASP HIS SEQRES 13 B 285 ASP LEU HIS ASN ILE VAL VAL LYS ASN GLY LYS PRO THR SEQRES 14 B 285 TRP MET ARG PRO GLY SER PHE PRO GLN THR ASN HIS ASN SEQRES 15 B 285 GLY TYR HIS LEU PRO PHE ASP PRO ARG ASN ASP PHE HIS SEQRES 16 B 285 THR TYR GLY VAL ASN VAL THR LYS ASP LYS ILE THR TRP SEQRES 17 B 285 TYR VAL ASP GLY GLU ILE VAL GLY GLU LYS ASP ASN LEU SEQRES 18 B 285 TYR TRP HIS ARG GLN MET ASN LEU THR LEU SER GLN GLY SEQRES 19 B 285 LEU ARG ALA PRO HIS THR GLN TRP LYS CYS ASN GLN PHE SEQRES 20 B 285 TYR PRO SER ALA ASN LYS SER ALA GLU GLY PHE PRO THR SEQRES 21 B 285 SER MET GLU VAL ASP TYR VAL ARG THR TRP VAL LYS VAL SEQRES 22 B 285 GLY ASN ASN ASN LEU GLU HIS HIS HIS HIS HIS HIS HET 9RN A 401 11 HET G4S A 402 15 HET 9RN A 403 10 HET G4S A 404 15 HET CIT A 405 13 HET 9RN B 401 11 HET G4S B 402 15 HET 9RN B 403 10 HET G4S B 404 15 HET CIT B 405 13 HETNAM 9RN 3,6-ANHYDRO-D-GALACTOSE HETNAM G4S 4-O-SULFO-BETA-D-GALACTOPYRANOSE HETNAM CIT CITRIC ACID HETSYN G4S 4-O-SULFO-BETA-D-GALACTOSE; 4-O-SULFO-D-GALACTOSE; 4-O- HETSYN 2 G4S SULFO-GALACTOSE FORMUL 3 9RN 4(C6 H10 O5) FORMUL 4 G4S 4(C6 H12 O9 S) FORMUL 7 CIT 2(C6 H8 O7) FORMUL 13 HOH *585(H2 O) HELIX 1 AA1 ALA A 43 SER A 46 5 4 HELIX 2 AA2 GLY A 97 GLN A 100 5 4 HELIX 3 AA3 PHE A 200 HIS A 205 1 6 HELIX 4 AA4 ALA B 43 SER B 46 5 4 HELIX 5 AA5 GLY B 97 GLN B 100 5 4 HELIX 6 AA6 PHE B 200 HIS B 205 1 6 SHEET 1 AA1 4 TRP A 39 LEU A 41 0 SHEET 2 AA1 4 THR A 284 LYS A 296 -1 O VAL A 295 N ILE A 40 SHEET 3 AA1 4 LYS A 80 ASP A 96 -1 N LEU A 81 O VAL A 288 SHEET 4 AA1 4 ALA A 74 SER A 77 -1 N THR A 75 O LYS A 82 SHEET 1 AA2 8 TRP A 67 TRP A 69 0 SHEET 2 AA2 8 GLN A 101 SER A 112 1 O SER A 112 N SER A 68 SHEET 3 AA2 8 LYS A 80 ASP A 96 -1 N PHE A 94 O VAL A 103 SHEET 4 AA2 8 THR A 284 LYS A 296 -1 O VAL A 288 N LEU A 81 SHEET 5 AA2 8 GLY A 124 LYS A 131 -1 N GLU A 127 O ARG A 292 SHEET 6 AA2 8 HIS A 219 VAL A 225 -1 O VAL A 225 N GLY A 124 SHEET 7 AA2 8 LYS A 229 VAL A 234 -1 O THR A 231 N ASN A 224 SHEET 8 AA2 8 GLU A 237 ASP A 243 -1 O LYS A 242 N ILE A 230 SHEET 1 AA3 7 TRP A 57 ASN A 58 0 SHEET 2 AA3 7 VAL A 114 SER A 117 -1 O LYS A 116 N ASN A 58 SHEET 3 AA3 7 ASN A 252 LEU A 259 -1 O LEU A 253 N SER A 117 SHEET 4 AA3 7 VAL A 139 TYR A 146 -1 N TRP A 144 O THR A 254 SHEET 5 AA3 7 VAL A 159 ASP A 168 -1 O VAL A 167 N PHE A 143 SHEET 6 AA3 7 LEU A 182 LYS A 188 -1 O ILE A 185 N GLN A 160 SHEET 7 AA3 7 LYS A 191 MET A 195 -1 O MET A 195 N ASN A 184 SHEET 1 AA4 2 GLU A 177 ASP A 179 0 SHEET 2 AA4 2 GLY A 207 HIS A 209 -1 O TYR A 208 N SER A 178 SHEET 1 AA5 2 THR A 264 LYS A 267 0 SHEET 2 AA5 2 GLN A 270 PRO A 273 -1 O TYR A 272 N GLN A 265 SHEET 1 AA6 4 GLU B 37 LEU B 41 0 SHEET 2 AA6 4 THR B 284 ASN B 299 -1 O VAL B 297 N THR B 38 SHEET 3 AA6 4 LYS B 80 ASP B 96 -1 N LEU B 81 O VAL B 288 SHEET 4 AA6 4 ALA B 74 SER B 77 -1 N THR B 75 O LYS B 82 SHEET 1 AA7 8 TRP B 67 TRP B 69 0 SHEET 2 AA7 8 GLN B 101 SER B 112 1 O SER B 112 N SER B 68 SHEET 3 AA7 8 LYS B 80 ASP B 96 -1 N ASP B 96 O GLN B 101 SHEET 4 AA7 8 THR B 284 ASN B 299 -1 O VAL B 288 N LEU B 81 SHEET 5 AA7 8 GLY B 124 LYS B 131 -1 N GLU B 127 O ARG B 292 SHEET 6 AA7 8 HIS B 219 VAL B 225 -1 O VAL B 225 N GLY B 124 SHEET 7 AA7 8 LYS B 229 VAL B 234 -1 O THR B 231 N ASN B 224 SHEET 8 AA7 8 GLU B 237 ASP B 243 -1 O LYS B 242 N ILE B 230 SHEET 1 AA8 7 TRP B 57 ASN B 58 0 SHEET 2 AA8 7 VAL B 114 GLY B 121 -1 O LYS B 116 N ASN B 58 SHEET 3 AA8 7 MET B 251 LEU B 259 -1 O LEU B 253 N SER B 117 SHEET 4 AA8 7 VAL B 139 TYR B 146 -1 N TRP B 144 O THR B 254 SHEET 5 AA8 7 VAL B 159 ASP B 168 -1 O VAL B 167 N PHE B 143 SHEET 6 AA8 7 LEU B 182 LYS B 188 -1 O HIS B 183 N GLU B 163 SHEET 7 AA8 7 LYS B 191 MET B 195 -1 O MET B 195 N ASN B 184 SHEET 1 AA9 2 GLU B 177 ASP B 179 0 SHEET 2 AA9 2 GLY B 207 HIS B 209 -1 O TYR B 208 N SER B 178 SHEET 1 AB1 2 THR B 264 LYS B 267 0 SHEET 2 AB1 2 GLN B 270 PRO B 273 -1 O TYR B 272 N GLN B 265 SSBOND 1 CYS A 98 CYS A 268 1555 1555 2.82 LINK O1 9RN A 401 C3 G4S A 402 1555 1555 1.36 LINK O1 G4S A 402 C4 9RN A 403 1555 1555 1.38 LINK O1 9RN A 403 C3 G4S A 404 1555 1555 1.40 LINK O1 9RN B 401 C3 G4S B 402 1555 1555 1.37 LINK O1 G4S B 402 C4 9RN B 403 1555 1555 1.38 LINK O1 9RN B 403 C3 G4S B 404 1555 1555 1.40 CISPEP 1 PHE A 136 PRO A 137 0 -6.52 CISPEP 2 ALA A 261 PRO A 262 0 14.99 CISPEP 3 PHE A 282 PRO A 283 0 -3.14 CISPEP 4 PHE B 136 PRO B 137 0 -3.26 CISPEP 5 ALA B 261 PRO B 262 0 19.03 CISPEP 6 PHE B 282 PRO B 283 0 2.80 CRYST1 62.608 67.364 158.399 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006313 0.00000