HEADER HYDROLASE 07-JUL-17 5OE7 TITLE STRUCTURE OF OTULIN BOUND TO THE MET1-LINKED DIUBIQUITIN ACTIVITY TITLE 2 PROBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN THIOESTERASE OTULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEUBIQUITINATING ENZYME OTULIN,OTU DOMAIN-CONTAINING COMPND 5 DEUBIQUITINASE WITH LINEAR LINKAGE SPECIFICITY,UBIQUITIN THIOESTERASE COMPND 6 GUMBY; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: POLYUBIQUITIN-C; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: CONTAINS AN N-TERMINAL BIOTIN-AHX GROUP. DRB IS COMPND 14 DERIVED FROM THE NON-NATURAL AMINO ACID DIHYRDOALANINE, INCORPORATED COMPND 15 VIA CHEMICAL SYNTHESIS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OTULIN, FAM105B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS DEUBIQUITINASE COMPLEX OTU, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.R.ELLIOTT,D.KOMANDER REVDAT 3 17-JAN-24 5OE7 1 REMARK REVDAT 2 01-NOV-17 5OE7 1 JRNL REVDAT 1 27-SEP-17 5OE7 0 JRNL AUTH A.WEBER,P.R.ELLIOTT,A.PINTO-FERNANDEZ,S.BONHAM,B.M.KESSLER, JRNL AUTH 2 D.KOMANDER,F.EL OUALID,D.KRAPPMANN JRNL TITL A LINEAR DIUBIQUITIN-BASED PROBE FOR EFFICIENT AND SELECTIVE JRNL TITL 2 DETECTION OF THE DEUBIQUITINATING ENZYME OTULIN. JRNL REF CELL CHEM BIOL V. 24 1299 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 28919039 JRNL DOI 10.1016/J.CHEMBIOL.2017.08.006 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.4180 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.57000 REMARK 3 B22 (A**2) : 3.57000 REMARK 3 B33 (A**2) : -11.57000 REMARK 3 B12 (A**2) : 1.78000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.823 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.485 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.481 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 63.789 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3145 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2799 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4299 ; 2.157 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6432 ; 1.220 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 407 ; 7.625 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;37.876 ;24.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;18.556 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3548 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 615 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1157 34.9360 25.6518 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.1041 REMARK 3 T33: 0.0165 T12: -0.0240 REMARK 3 T13: 0.0223 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 3.4062 L22: 3.3004 REMARK 3 L33: 4.3671 L12: 0.2350 REMARK 3 L13: 0.4330 L23: 2.1273 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: -0.5310 S13: -0.0379 REMARK 3 S21: 0.1764 S22: -0.0188 S23: 0.2078 REMARK 3 S31: 0.0685 S32: -0.2456 S33: 0.0556 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2996 27.1126 19.3173 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.2946 REMARK 3 T33: 0.2190 T12: 0.1573 REMARK 3 T13: -0.0361 T23: -0.1092 REMARK 3 L TENSOR REMARK 3 L11: 2.4943 L22: 1.1717 REMARK 3 L33: 5.1234 L12: -0.1537 REMARK 3 L13: 0.3715 L23: 0.8171 REMARK 3 S TENSOR REMARK 3 S11: -0.0715 S12: -0.1388 S13: 0.0339 REMARK 3 S21: 0.3062 S22: 0.1137 S23: -0.3063 REMARK 3 S31: 0.6727 S32: 0.8678 S33: -0.0422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 5OE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 6.3-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11908 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 54.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.76900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 3ZNZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9-2.1 M AMMONIUM SULPHATE, 100 MM REMARK 280 BIS-TRIS, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.57150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.19747 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 92.63867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.57150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.19747 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 92.63867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.57150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.19747 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 92.63867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.57150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.19747 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 92.63867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.57150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.19747 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.63867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.57150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.19747 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 92.63867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.39494 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 185.27733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.39494 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 185.27733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.39494 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 185.27733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.39494 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 185.27733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.39494 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 185.27733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.39494 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 185.27733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 176 REMARK 465 PHE A 177 REMARK 465 ASP A 178 REMARK 465 GLY A 179 REMARK 465 LYS A 180 REMARK 465 ASN A 181 REMARK 465 GLU A 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 89 CG SD CE REMARK 470 LYS A 93 CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 LEU A 156 CG CD1 CD2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LEU A 161 CG CD1 CD2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 GLN A 170 CG CD OE1 NE2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 LYS B 48 CD CE NZ REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 LEU B 84 CG CD1 CD2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 ASP B 115 CG OD1 OD2 REMARK 470 ARG B 118 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 GLN B 125 CG CD OE1 NE2 REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 ARG B 130 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 74 OE2 GLU B 94 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DHA B 76 C MET B 77 N 0.211 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 75 CA - C - N ANGL. DEV. = -19.6 DEGREES REMARK 500 GLY B 75 O - C - N ANGL. DEV. = 14.5 DEGREES REMARK 500 DHA B 76 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 PRO B 113 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 127 -4.67 85.79 REMARK 500 GLN A 170 0.04 -66.11 REMARK 500 HIS A 276 -53.54 -129.64 REMARK 500 HIS A 282 -88.90 -125.56 REMARK 500 SER A 308 -36.50 -39.34 REMARK 500 ASP A 336 50.06 -140.61 REMARK 500 ASP A 337 16.42 58.62 REMARK 500 ASN B 60 65.70 36.63 REMARK 500 LYS B 63 136.70 -34.16 REMARK 500 GLU B 110 39.76 -150.60 REMARK 500 ARG B 130 174.38 -56.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 5OE7 A 80 350 UNP Q96BN8 OTUL_HUMAN 80 350 DBREF 5OE7 B 1 146 UNP P0CG48 UBC_HUMAN 1 146 SEQADV 5OE7 GLY A 78 UNP Q96BN8 EXPRESSION TAG SEQADV 5OE7 PRO A 79 UNP Q96BN8 EXPRESSION TAG SEQADV 5OE7 DHA B 76 UNP P0CG48 GLY 76 CONFLICT SEQRES 1 A 273 GLY PRO LEU SER VAL ALA PRO GLU MET ASP ILE MET ASP SEQRES 2 A 273 TYR CYS LYS LYS GLU TRP ARG GLY ASN THR GLN LYS ALA SEQRES 3 A 273 THR CYS MET LYS MET GLY TYR GLU GLU VAL SER GLN LYS SEQRES 4 A 273 PHE THR SER ILE ARG ARG VAL ARG GLY ASP ASN TYR CYS SEQRES 5 A 273 ALA LEU ARG ALA THR LEU PHE GLN ALA MET SER GLN ALA SEQRES 6 A 273 VAL GLY LEU PRO PRO TRP LEU GLN ASP PRO GLU LEU MET SEQRES 7 A 273 LEU LEU PRO GLU LYS LEU ILE SER LYS TYR ASN TRP ILE SEQRES 8 A 273 LYS GLN TRP LYS LEU GLY LEU LYS PHE ASP GLY LYS ASN SEQRES 9 A 273 GLU ASP LEU VAL ASP LYS ILE LYS GLU SER LEU THR LEU SEQRES 10 A 273 LEU ARG LYS LYS TRP ALA GLY LEU ALA GLU MET ARG THR SEQRES 11 A 273 ALA GLU ALA ARG GLN ILE ALA CYS ASP GLU LEU PHE THR SEQRES 12 A 273 ASN GLU ALA GLU GLU TYR SER LEU TYR GLU ALA VAL LYS SEQRES 13 A 273 PHE LEU MET LEU ASN ARG ALA ILE GLU LEU TYR ASN ASP SEQRES 14 A 273 LYS GLU LYS GLY LYS GLU VAL PRO PHE PHE SER VAL LEU SEQRES 15 A 273 LEU PHE ALA ARG ASP THR SER ASN ASP PRO GLY GLN LEU SEQRES 16 A 273 LEU ARG ASN HIS LEU ASN GLN VAL GLY HIS THR GLY GLY SEQRES 17 A 273 LEU GLU GLN VAL GLU MET PHE LEU LEU ALA TYR ALA VAL SEQRES 18 A 273 ARG HIS THR ILE GLN VAL TYR ARG LEU SER LYS TYR ASN SEQRES 19 A 273 THR GLU GLU PHE ILE THR VAL TYR PRO THR ASP PRO PRO SEQRES 20 A 273 LYS ASP TRP PRO VAL VAL THR LEU ILE ALA GLU ASP ASP SEQRES 21 A 273 ARG HIS TYR ASN ILE PRO VAL ARG VAL CYS GLU GLU THR SEQRES 1 B 146 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 146 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 146 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 146 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 146 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 146 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY DHA MET GLN SEQRES 7 B 146 ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU SEQRES 8 B 146 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 9 B 146 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 10 B 146 ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG SEQRES 11 B 146 THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU SEQRES 12 B 146 HIS LEU VAL HET DHA B 76 5 HETNAM DHA 2-AMINO-ACRYLIC ACID HETSYN DHA 2,3-DIDEHYDROALANINE FORMUL 2 DHA C3 H5 N O2 HELIX 1 AA1 ILE A 88 TRP A 96 1 9 HELIX 2 AA2 THR A 100 LYS A 116 1 17 HELIX 3 AA3 TYR A 128 GLN A 141 1 14 HELIX 4 AA4 PRO A 146 ASP A 151 1 6 HELIX 5 AA5 LEU A 156 TYR A 165 1 10 HELIX 6 AA6 ASN A 166 TRP A 171 5 6 HELIX 7 AA7 LEU A 184 GLU A 204 1 21 HELIX 8 AA8 THR A 207 ASN A 221 1 15 HELIX 9 AA9 GLU A 222 LYS A 249 1 28 HELIX 10 AB1 PRO A 254 PHE A 261 1 8 HELIX 11 AB2 ALA A 262 ASN A 267 5 6 HELIX 12 AB3 ASP A 268 HIS A 276 1 9 HELIX 13 AB4 GLN A 288 ARG A 299 1 12 HELIX 14 AB5 SER A 308 TYR A 310 5 3 HELIX 15 AB6 THR A 312 GLU A 314 5 3 HELIX 16 AB7 THR B 22 GLY B 35 1 14 HELIX 17 AB8 PRO B 37 GLN B 41 5 5 HELIX 18 AB9 THR B 98 GLY B 111 1 14 HELIX 19 AC1 PRO B 113 GLN B 117 5 5 SHEET 1 AA1 3 MET A 86 ASP A 87 0 SHEET 2 AA1 3 PHE A 117 ARG A 121 -1 O ILE A 120 N MET A 86 SHEET 3 AA1 3 ILE A 342 ARG A 345 -1 O ILE A 342 N ARG A 121 SHEET 1 AA2 2 LEU A 286 GLU A 287 0 SHEET 2 AA2 2 ARG B 74 GLY B 75 -1 O GLY B 75 N LEU A 286 SHEET 1 AA3 3 ILE A 316 TYR A 319 0 SHEET 2 AA3 3 THR A 301 ARG A 306 -1 N ILE A 302 O TYR A 319 SHEET 3 AA3 3 VAL A 329 ALA A 334 1 O ALA A 334 N TYR A 305 SHEET 1 AA4 5 THR B 12 GLU B 16 0 SHEET 2 AA4 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA4 5 THR B 66 LEU B 69 1 O LEU B 67 N LYS B 6 SHEET 4 AA4 5 LEU B 43 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA4 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA5 4 THR B 88 GLU B 92 0 SHEET 2 AA5 4 GLN B 78 LYS B 82 -1 N VAL B 81 O ILE B 89 SHEET 3 AA5 4 THR B 142 VAL B 146 1 O LEU B 143 N PHE B 80 SHEET 4 AA5 4 ARG B 118 LEU B 119 -1 N ARG B 118 O VAL B 146 SSBOND 1 CYS A 92 CYS A 347 1555 2665 1.82 LINK SG CYS A 129 CB DHA B 76 1555 1555 1.59 LINK C GLY B 75 N DHA B 76 1555 1555 1.28 LINK C DHA B 76 N MET B 77 1555 1555 1.55 CISPEP 1 TYR A 319 PRO A 320 0 -12.56 CRYST1 101.143 101.143 277.916 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009887 0.005708 0.000000 0.00000 SCALE2 0.000000 0.011417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003598 0.00000