HEADER MEMBRANE PROTEIN 11-JUL-17 5OFR TITLE STRUCTURE OF THE ANTIBACTERIAL PEPTIDE ABC TRANSPORTER MCJD IN A HIGH TITLE 2 ENERGY OUTWARD OCCLUDED INTERMEDIATE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROCIN-J25 EXPORT ATP-BINDING/PERMEASE PROTEIN MCJD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MICROCIN-J25 IMMUNITY PROTEIN,MICROCIN-J25 SECRETION ATP- COMPND 5 BINDING PROTEIN MCJD; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MCJD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511145 KEYWDS ABC TRANSPORTER, ANTIBACTERIAL PEPTIDE, HIGH ENERGY OUTWARD OCCLUDED KEYWDS 2 INTERMEDIATE, ADP-VO4, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.BEIS,K.BOUNTRA REVDAT 3 17-JAN-24 5OFR 1 REMARK LINK REVDAT 2 22-NOV-17 5OFR 1 JRNL REVDAT 1 06-SEP-17 5OFR 0 JRNL AUTH K.BOUNTRA,G.HAGELUEKEN,H.G.CHOUDHURY,V.CORRADI,K.EL OMARI, JRNL AUTH 2 A.WAGNER,I.MATHAVAN,S.ZIRAH,W.YUAN WAHLGREN,D.P.TIELEMAN, JRNL AUTH 3 O.SCHIEMANN,S.REBUFFAT,K.BEIS JRNL TITL STRUCTURAL BASIS FOR ANTIBACTERIAL PEPTIDE SELF-IMMUNITY BY JRNL TITL 2 THE BACTERIAL ABC TRANSPORTER MCJD. JRNL REF EMBO J. V. 36 3062 2017 JRNL REFN ESSN 1460-2075 JRNL PMID 28864543 JRNL DOI 10.15252/EMBJ.201797278 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.G.CHOUDHURY,Z.TONG,I.MATHAVAN,Y.LI,S.IWATA,S.ZIRAH, REMARK 1 AUTH 2 S.REBUFFAT,H.W.VAN VEEN,K.BEIS REMARK 1 TITL STRUCTURE OF AN ANTIBACTERIAL PEPTIDE ATP-BINDING CASSETTE REMARK 1 TITL 2 TRANSPORTER IN A NOVEL OUTWARD OCCLUDED STATE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 9145 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 24920594 REMARK 1 DOI 10.1073/PNAS.1320506111 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 58.6 REMARK 3 NUMBER OF REFLECTIONS : 22350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1068 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.57 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 25.18 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1264 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2470 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1204 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.75 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9095 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 98.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90210 REMARK 3 B22 (A**2) : 3.67820 REMARK 3 B33 (A**2) : -4.58030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -14.03670 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.630 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.647 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.848 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.835 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 9328 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12647 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 4404 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 216 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1356 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 9328 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 6 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1279 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 11188 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.48 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 60 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.26 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22352 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 95.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PL0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000, 0.1 M AMMONIUM SULPHATE, REMARK 280 100 MM HEPES PH 7.5 AND 22% GLYCEROL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 117.64500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.52000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 117.64500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.52000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 GLU A 580 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 3 REMARK 465 GLU B 580 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY B 55 O GLY B 55 2558 1.02 REMARK 500 C GLY B 55 O GLY B 55 2558 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 57 47.14 0.63 REMARK 500 ILE A 147 -70.86 -113.87 REMARK 500 ALA A 325 2.98 -157.26 REMARK 500 ASN A 327 54.59 -154.04 REMARK 500 SER A 333 -96.86 -74.81 REMARK 500 ILE A 334 -4.03 86.10 REMARK 500 LEU A 337 61.16 14.79 REMARK 500 ARG A 341 -85.12 54.46 REMARK 500 ASP A 356 -23.16 63.63 REMARK 500 ASN A 362 -70.77 -70.35 REMARK 500 SER A 363 57.86 -158.59 REMARK 500 ASP A 406 -33.75 78.83 REMARK 500 ASP A 433 -168.44 -175.29 REMARK 500 ASN A 465 16.38 57.02 REMARK 500 ILE A 475 170.53 -56.43 REMARK 500 ASN A 479 2.50 -68.19 REMARK 500 GLU A 506 29.06 45.81 REMARK 500 ASN A 540 1.31 -63.66 REMARK 500 ASP B 18 -161.76 -78.97 REMARK 500 ASN B 59 76.84 -102.33 REMARK 500 ILE B 147 -71.11 -106.30 REMARK 500 ARG B 323 21.69 -70.91 REMARK 500 HIS B 324 -11.86 -145.97 REMARK 500 GLU B 326 40.51 -71.63 REMARK 500 ASN B 327 103.93 -59.04 REMARK 500 ALA B 329 -83.31 -53.14 REMARK 500 THR B 330 57.20 31.95 REMARK 500 PRO B 332 88.07 -64.82 REMARK 500 PRO B 335 -92.87 -47.72 REMARK 500 PHE B 336 66.23 -111.77 REMARK 500 SER B 355 -121.65 -106.82 REMARK 500 ASP B 357 -42.49 79.86 REMARK 500 ASN B 362 -72.34 -68.59 REMARK 500 SER B 363 58.63 -157.64 REMARK 500 ASN B 405 61.61 64.17 REMARK 500 ASP B 406 -36.95 79.36 REMARK 500 ASP B 433 -165.08 -170.62 REMARK 500 ASN B 465 16.09 56.32 REMARK 500 ILE B 475 170.95 -58.18 REMARK 500 GLU B 506 28.80 45.01 REMARK 500 ALA B 576 48.05 -78.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 385 OG REMARK 620 2 GLN A 426 OE1 75.3 REMARK 620 3 ADP A 601 O1B 107.3 156.8 REMARK 620 4 VO4 A 603 O1 126.6 85.8 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 603 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 601 O3B REMARK 620 2 VO4 A 603 O1 121.3 REMARK 620 3 VO4 A 603 O2 67.7 120.2 REMARK 620 4 VO4 A 603 O3 83.8 120.1 119.7 REMARK 620 5 VO4 A 603 O4 144.1 92.4 85.5 89.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 385 OG REMARK 620 2 GLN B 426 OE1 76.6 REMARK 620 3 ADP B 601 O2B 103.3 164.1 REMARK 620 4 VO4 B 603 O1 141.9 80.8 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 B 603 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 601 O3B REMARK 620 2 VO4 B 603 O1 106.4 REMARK 620 3 VO4 B 603 O2 76.0 119.5 REMARK 620 4 VO4 B 603 O3 90.1 118.4 122.0 REMARK 620 5 VO4 B 603 O4 164.2 88.1 91.4 88.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VO4 B 603 DBREF 5OFR A 1 580 UNP Q9X2W0 MCJD_ECOLX 1 580 DBREF 5OFR B 1 580 UNP Q9X2W0 MCJD_ECOLX 1 580 SEQRES 1 A 580 MET GLU ARG LYS GLN LYS ASN SER LEU PHE ASN TYR ILE SEQRES 2 A 580 TYR SER LEU MET ASP VAL ARG GLY LYS PHE LEU PHE PHE SEQRES 3 A 580 SER MET LEU PHE ILE THR SER LEU SER SER ILE ILE ILE SEQRES 4 A 580 SER ILE SER PRO LEU ILE LEU ALA LYS ILE THR ASP LEU SEQRES 5 A 580 LEU SER GLY SER LEU SER ASN PHE SER TYR GLU TYR LEU SEQRES 6 A 580 VAL LEU LEU ALA CYS LEU TYR MET PHE CYS VAL ILE SER SEQRES 7 A 580 ASN LYS ALA SER VAL PHE LEU PHE MET ILE LEU GLN SER SEQRES 8 A 580 SER LEU ARG ILE ASN MET GLN LYS LYS MET SER LEU LYS SEQRES 9 A 580 TYR LEU ARG GLU LEU TYR ASN GLU ASN ILE THR ASN LEU SEQRES 10 A 580 SER LYS ASN ASN ALA GLY TYR THR THR GLN SER LEU ASN SEQRES 11 A 580 GLN ALA SER ASN ASP ILE TYR ILE LEU VAL ARG ASN VAL SEQRES 12 A 580 SER GLN ASN ILE LEU SER PRO VAL ILE GLN LEU ILE SER SEQRES 13 A 580 THR ILE VAL VAL VAL LEU SER THR LYS ASP TRP PHE SER SEQRES 14 A 580 ALA GLY VAL PHE PHE LEU TYR ILE LEU VAL PHE VAL ILE SEQRES 15 A 580 PHE ASN THR ARG LEU THR GLY SER LEU ALA SER LEU ARG SEQRES 16 A 580 LYS HIS SER MET ASP ILE THR LEU ASN SER TYR SER LEU SEQRES 17 A 580 LEU SER ASP THR VAL ASP ASN MET ILE ALA ALA LYS LYS SEQRES 18 A 580 ASN ASN ALA LEU ARG LEU ILE SER GLU ARG TYR GLU ASP SEQRES 19 A 580 ALA LEU THR GLN GLU ASN ASN ALA GLN LYS LYS TYR TRP SEQRES 20 A 580 LEU LEU SER SER LYS VAL LEU LEU LEU ASN SER LEU LEU SEQRES 21 A 580 ALA VAL ILE LEU PHE GLY SER VAL PHE ILE TYR ASN ILE SEQRES 22 A 580 LEU GLY VAL LEU ASN GLY VAL VAL SER ILE GLY HIS PHE SEQRES 23 A 580 ILE MET ILE THR SER TYR ILE ILE LEU LEU SER THR PRO SEQRES 24 A 580 VAL GLU ASN ILE GLY ALA LEU LEU SER GLU ILE ARG GLN SEQRES 25 A 580 SER MET SER SER LEU ALA GLY PHE ILE GLN ARG HIS ALA SEQRES 26 A 580 GLU ASN LYS ALA THR SER PRO SER ILE PRO PHE LEU ASN SEQRES 27 A 580 MET GLU ARG LYS LEU ASN LEU SER ILE ARG GLU LEU SER SEQRES 28 A 580 PHE SER TYR SER ASP ASP LYS LYS ILE LEU ASN SER VAL SEQRES 29 A 580 SER LEU ASP LEU PHE THR GLY LYS MET TYR SER LEU THR SEQRES 30 A 580 GLY PRO SER GLY SER GLY LYS SER THR LEU VAL LYS ILE SEQRES 31 A 580 ILE SER GLY TYR TYR LYS ASN TYR PHE GLY ASP ILE TYR SEQRES 32 A 580 LEU ASN ASP ILE SER LEU ARG ASN ILE SER ASP GLU ASP SEQRES 33 A 580 LEU ASN ASP ALA ILE TYR TYR LEU THR GLN ASP ASP TYR SEQRES 34 A 580 ILE PHE MET ASP THR LEU ARG PHE ASN LEU ARG LEU ALA SEQRES 35 A 580 ASN TYR ASP ALA SER GLU ASN GLU ILE PHE LYS VAL LEU SEQRES 36 A 580 LYS LEU ALA ASN LEU SER VAL VAL ASN ASN GLU PRO VAL SEQRES 37 A 580 SER LEU ASP THR HIS LEU ILE ASN ARG GLY ASN ASN TYR SEQRES 38 A 580 SER GLY GLY GLN LYS GLN ARG ILE SER LEU ALA ARG LEU SEQRES 39 A 580 PHE LEU ARG LYS PRO ALA ILE ILE ILE ILE ASP GLU ALA SEQRES 40 A 580 THR SER ALA LEU ASP TYR ILE ASN GLU SER GLU ILE LEU SEQRES 41 A 580 SER SER ILE ARG THR HIS PHE PRO ASP ALA LEU ILE ILE SEQRES 42 A 580 ASN ILE SER HIS ARG ILE ASN LEU LEU GLU CYS SER ASP SEQRES 43 A 580 CYS VAL TYR VAL LEU ASN GLU GLY ASN ILE VAL ALA SER SEQRES 44 A 580 GLY HIS PHE ARG ASP LEU MET VAL SER ASN GLU TYR ILE SEQRES 45 A 580 SER GLY LEU ALA SER VAL THR GLU SEQRES 1 B 580 MET GLU ARG LYS GLN LYS ASN SER LEU PHE ASN TYR ILE SEQRES 2 B 580 TYR SER LEU MET ASP VAL ARG GLY LYS PHE LEU PHE PHE SEQRES 3 B 580 SER MET LEU PHE ILE THR SER LEU SER SER ILE ILE ILE SEQRES 4 B 580 SER ILE SER PRO LEU ILE LEU ALA LYS ILE THR ASP LEU SEQRES 5 B 580 LEU SER GLY SER LEU SER ASN PHE SER TYR GLU TYR LEU SEQRES 6 B 580 VAL LEU LEU ALA CYS LEU TYR MET PHE CYS VAL ILE SER SEQRES 7 B 580 ASN LYS ALA SER VAL PHE LEU PHE MET ILE LEU GLN SER SEQRES 8 B 580 SER LEU ARG ILE ASN MET GLN LYS LYS MET SER LEU LYS SEQRES 9 B 580 TYR LEU ARG GLU LEU TYR ASN GLU ASN ILE THR ASN LEU SEQRES 10 B 580 SER LYS ASN ASN ALA GLY TYR THR THR GLN SER LEU ASN SEQRES 11 B 580 GLN ALA SER ASN ASP ILE TYR ILE LEU VAL ARG ASN VAL SEQRES 12 B 580 SER GLN ASN ILE LEU SER PRO VAL ILE GLN LEU ILE SER SEQRES 13 B 580 THR ILE VAL VAL VAL LEU SER THR LYS ASP TRP PHE SER SEQRES 14 B 580 ALA GLY VAL PHE PHE LEU TYR ILE LEU VAL PHE VAL ILE SEQRES 15 B 580 PHE ASN THR ARG LEU THR GLY SER LEU ALA SER LEU ARG SEQRES 16 B 580 LYS HIS SER MET ASP ILE THR LEU ASN SER TYR SER LEU SEQRES 17 B 580 LEU SER ASP THR VAL ASP ASN MET ILE ALA ALA LYS LYS SEQRES 18 B 580 ASN ASN ALA LEU ARG LEU ILE SER GLU ARG TYR GLU ASP SEQRES 19 B 580 ALA LEU THR GLN GLU ASN ASN ALA GLN LYS LYS TYR TRP SEQRES 20 B 580 LEU LEU SER SER LYS VAL LEU LEU LEU ASN SER LEU LEU SEQRES 21 B 580 ALA VAL ILE LEU PHE GLY SER VAL PHE ILE TYR ASN ILE SEQRES 22 B 580 LEU GLY VAL LEU ASN GLY VAL VAL SER ILE GLY HIS PHE SEQRES 23 B 580 ILE MET ILE THR SER TYR ILE ILE LEU LEU SER THR PRO SEQRES 24 B 580 VAL GLU ASN ILE GLY ALA LEU LEU SER GLU ILE ARG GLN SEQRES 25 B 580 SER MET SER SER LEU ALA GLY PHE ILE GLN ARG HIS ALA SEQRES 26 B 580 GLU ASN LYS ALA THR SER PRO SER ILE PRO PHE LEU ASN SEQRES 27 B 580 MET GLU ARG LYS LEU ASN LEU SER ILE ARG GLU LEU SER SEQRES 28 B 580 PHE SER TYR SER ASP ASP LYS LYS ILE LEU ASN SER VAL SEQRES 29 B 580 SER LEU ASP LEU PHE THR GLY LYS MET TYR SER LEU THR SEQRES 30 B 580 GLY PRO SER GLY SER GLY LYS SER THR LEU VAL LYS ILE SEQRES 31 B 580 ILE SER GLY TYR TYR LYS ASN TYR PHE GLY ASP ILE TYR SEQRES 32 B 580 LEU ASN ASP ILE SER LEU ARG ASN ILE SER ASP GLU ASP SEQRES 33 B 580 LEU ASN ASP ALA ILE TYR TYR LEU THR GLN ASP ASP TYR SEQRES 34 B 580 ILE PHE MET ASP THR LEU ARG PHE ASN LEU ARG LEU ALA SEQRES 35 B 580 ASN TYR ASP ALA SER GLU ASN GLU ILE PHE LYS VAL LEU SEQRES 36 B 580 LYS LEU ALA ASN LEU SER VAL VAL ASN ASN GLU PRO VAL SEQRES 37 B 580 SER LEU ASP THR HIS LEU ILE ASN ARG GLY ASN ASN TYR SEQRES 38 B 580 SER GLY GLY GLN LYS GLN ARG ILE SER LEU ALA ARG LEU SEQRES 39 B 580 PHE LEU ARG LYS PRO ALA ILE ILE ILE ILE ASP GLU ALA SEQRES 40 B 580 THR SER ALA LEU ASP TYR ILE ASN GLU SER GLU ILE LEU SEQRES 41 B 580 SER SER ILE ARG THR HIS PHE PRO ASP ALA LEU ILE ILE SEQRES 42 B 580 ASN ILE SER HIS ARG ILE ASN LEU LEU GLU CYS SER ASP SEQRES 43 B 580 CYS VAL TYR VAL LEU ASN GLU GLY ASN ILE VAL ALA SER SEQRES 44 B 580 GLY HIS PHE ARG ASP LEU MET VAL SER ASN GLU TYR ILE SEQRES 45 B 580 SER GLY LEU ALA SER VAL THR GLU HET ADP A 601 27 HET MG A 602 1 HET VO4 A 603 5 HET ADP B 601 27 HET MG B 602 1 HET VO4 B 603 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM VO4 VANADATE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 VO4 2(O4 V 3-) HELIX 1 AA1 LEU A 9 LEU A 16 1 8 HELIX 2 AA2 ASP A 18 SER A 54 1 37 HELIX 3 AA3 SER A 58 ASN A 111 1 54 HELIX 4 AA4 ASN A 113 SER A 118 1 6 HELIX 5 AA5 ASN A 121 ASN A 146 1 26 HELIX 6 AA6 ILE A 147 THR A 164 1 18 HELIX 7 AA7 ASP A 166 ASN A 215 1 50 HELIX 8 AA8 ASN A 215 ASN A 222 1 8 HELIX 9 AA9 ALA A 224 ASN A 278 1 55 HELIX 10 AB1 SER A 282 ARG A 323 1 42 HELIX 11 AB2 GLY A 383 SER A 392 1 10 HELIX 12 AB3 ARG A 410 ILE A 412 5 3 HELIX 13 AB4 SER A 413 ALA A 420 1 8 HELIX 14 AB5 LEU A 435 LEU A 441 1 7 HELIX 15 AB6 SER A 447 ALA A 458 1 12 HELIX 16 AB7 ILE A 475 ASN A 479 5 5 HELIX 17 AB8 SER A 482 PHE A 495 1 14 HELIX 18 AB9 ASP A 512 PHE A 527 1 16 HELIX 19 AC1 ASP A 564 ASN A 569 1 6 HELIX 20 AC2 ASN A 569 SER A 577 1 9 HELIX 21 AC3 GLN B 5 LEU B 16 1 12 HELIX 22 AC4 ASP B 18 SER B 54 1 37 HELIX 23 AC5 SER B 61 ASN B 111 1 51 HELIX 24 AC6 ASN B 113 LYS B 119 1 7 HELIX 25 AC7 ASN B 121 ILE B 147 1 27 HELIX 26 AC8 ILE B 147 THR B 164 1 18 HELIX 27 AC9 ASP B 166 ASN B 215 1 50 HELIX 28 AD1 ASN B 215 ASN B 222 1 8 HELIX 29 AD2 ALA B 224 ASN B 278 1 55 HELIX 30 AD3 SER B 282 LEU B 296 1 15 HELIX 31 AD4 LEU B 296 GLU B 326 1 31 HELIX 32 AD5 GLY B 383 SER B 392 1 10 HELIX 33 AD6 ARG B 410 ILE B 412 5 3 HELIX 34 AD7 SER B 413 ALA B 420 1 8 HELIX 35 AD8 THR B 434 LEU B 441 1 8 HELIX 36 AD9 SER B 447 ALA B 458 1 12 HELIX 37 AE1 ILE B 475 ASN B 479 5 5 HELIX 38 AE2 SER B 482 ARG B 497 1 16 HELIX 39 AE3 ASP B 512 PHE B 527 1 16 HELIX 40 AE4 ARG B 538 CYS B 544 1 7 HELIX 41 AE5 ASN B 569 ALA B 576 1 8 SHEET 1 AA1 4 LYS A 359 LEU A 368 0 SHEET 2 AA1 4 LEU A 345 SER A 353 -1 N LEU A 345 O LEU A 368 SHEET 3 AA1 4 PHE A 399 LEU A 404 -1 O ASP A 401 N ARG A 348 SHEET 4 AA1 4 ILE A 407 SER A 408 -1 O ILE A 407 N LEU A 404 SHEET 1 AA2 6 ILE A 421 LEU A 424 0 SHEET 2 AA2 6 ILE A 501 ASP A 505 1 O ILE A 503 N LEU A 424 SHEET 3 AA2 6 LEU A 531 ILE A 535 1 O LEU A 531 N ILE A 502 SHEET 4 AA2 6 MET A 373 THR A 377 1 N TYR A 374 O ILE A 532 SHEET 5 AA2 6 CYS A 547 ASN A 552 1 O LEU A 551 N THR A 377 SHEET 6 AA2 6 ASN A 555 ALA A 558 -1 O ASN A 555 N ASN A 552 SHEET 1 AA3 2 ASP A 433 THR A 434 0 SHEET 2 AA3 2 HIS A 473 LEU A 474 -1 O LEU A 474 N ASP A 433 SHEET 1 AA4 2 VAL A 462 VAL A 463 0 SHEET 2 AA4 2 GLU A 466 PRO A 467 -1 O GLU A 466 N VAL A 463 SHEET 1 AA5 4 LEU B 361 ASP B 367 0 SHEET 2 AA5 4 LEU B 345 PHE B 352 -1 N LEU B 350 O VAL B 364 SHEET 3 AA5 4 PHE B 399 LEU B 404 -1 O ASP B 401 N ARG B 348 SHEET 4 AA5 4 ILE B 407 SER B 408 -1 O ILE B 407 N LEU B 404 SHEET 1 AA6 6 ILE B 421 LEU B 424 0 SHEET 2 AA6 6 ILE B 501 ASP B 505 1 O ILE B 503 N LEU B 424 SHEET 3 AA6 6 LEU B 531 ILE B 535 1 O LEU B 531 N ILE B 502 SHEET 4 AA6 6 MET B 373 THR B 377 1 N TYR B 374 O ILE B 532 SHEET 5 AA6 6 CYS B 547 ASN B 552 1 O LEU B 551 N THR B 377 SHEET 6 AA6 6 ASN B 555 ALA B 558 -1 O ASN B 555 N ASN B 552 SHEET 1 AA7 2 VAL B 462 VAL B 463 0 SHEET 2 AA7 2 GLU B 466 PRO B 467 -1 O GLU B 466 N VAL B 463 LINK OG SER A 385 MG MG A 602 1555 1555 1.93 LINK OE1 GLN A 426 MG MG A 602 1555 1555 2.30 LINK O1B ADP A 601 MG MG A 602 1555 1555 1.94 LINK O3B ADP A 601 V VO4 A 603 1555 1555 2.73 LINK MG MG A 602 O1 VO4 A 603 1555 1555 1.94 LINK OG SER B 385 MG MG B 602 1555 1555 1.90 LINK OE1 GLN B 426 MG MG B 602 1555 1555 2.32 LINK O2B ADP B 601 MG MG B 602 1555 1555 2.33 LINK O3B ADP B 601 V VO4 B 603 1555 1555 2.22 LINK MG MG B 602 O1 VO4 B 603 1555 1555 1.93 SITE 1 AC1 16 TYR A 354 ILE A 360 PRO A 379 SER A 380 SITE 2 AC1 16 GLY A 381 SER A 382 GLY A 383 LYS A 384 SITE 3 AC1 16 SER A 385 THR A 386 MG A 602 VO4 A 603 SITE 4 AC1 16 ASN B 479 ASN B 480 SER B 482 GLN B 485 SITE 1 AC2 4 SER A 385 GLN A 426 ADP A 601 VO4 A 603 SITE 1 AC3 13 SER A 380 LYS A 384 SER A 385 GLN A 426 SITE 2 AC3 13 ASP A 505 GLU A 506 HIS A 537 ADP A 601 SITE 3 AC3 13 MG A 602 SER B 482 GLY B 483 GLY B 484 SITE 4 AC3 13 ALA B 510 SITE 1 AC4 18 VAL A 463 ASN A 464 ASN A 479 ASN A 480 SITE 2 AC4 18 SER A 482 GLN A 485 TYR B 354 ILE B 360 SITE 3 AC4 18 PRO B 379 SER B 380 GLY B 381 SER B 382 SITE 4 AC4 18 GLY B 383 LYS B 384 SER B 385 THR B 386 SITE 5 AC4 18 MG B 602 VO4 B 603 SITE 1 AC5 4 SER B 385 GLN B 426 ADP B 601 VO4 B 603 SITE 1 AC6 12 SER A 482 GLY A 483 GLY A 484 ALA A 510 SITE 2 AC6 12 SER B 380 LYS B 384 SER B 385 GLN B 426 SITE 3 AC6 12 GLU B 506 HIS B 537 ADP B 601 MG B 602 CRYST1 235.290 105.040 117.370 90.00 105.55 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004250 0.000000 0.001183 0.00000 SCALE2 0.000000 0.009520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008844 0.00000