HEADER HYDROLASE 13-JUL-17 5OGQ TITLE STRUCTURE OF CATHEPSIN B1 FROM SCHISTOSOMA MANSONI IN COMPLEX WITH TITLE 2 WRR391 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN B-LIKE PEPTIDASE (C01 FAMILY); COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CATHEPSIN B1 ISOTYPE 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 GENE: CB1.1, SMP_103610; SOURCE 6 EXPRESSION_SYSTEM: PICHIA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4919; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: X-33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAA KEYWDS PROTEASE, PARASITE, INHIBITOR, VINYL SULFONE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.JILKOVA,P.REZACOVA,J.BRYNDA,M.MARES REVDAT 3 17-JAN-24 5OGQ 1 REMARK REVDAT 2 30-DEC-20 5OGQ 1 JRNL REVDAT 1 21-NOV-18 5OGQ 0 JRNL AUTH A.JILKOVA,P.RUBESOVA,J.FANFRLIK,P.FAJTOVA,P.REZACOVA, JRNL AUTH 2 J.BRYNDA,M.LEPSIK,H.MERTLIKOVA-KAISEROVA,C.D.EMAL, JRNL AUTH 3 A.R.RENSLO,W.R.ROUSH,M.HORN,C.R.CAFFREY,M.MARES JRNL TITL DRUGGABLE HOT SPOTS IN THE SCHISTOSOMIASIS CATHEPSIN B1 JRNL TITL 2 TARGET IDENTIFIED BY FUNCTIONAL AND BINDING MODE ANALYSIS OF JRNL TITL 3 POTENT VINYL SULFONE INHIBITORS. JRNL REF ACS INFECT DIS. 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 33175511 JRNL DOI 10.1021/ACSINFECDIS.0C00501 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 51402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1367 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 48.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5994 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 142 REMARK 3 SOLVENT ATOMS : 442 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.73000 REMARK 3 B22 (A**2) : 8.73000 REMARK 3 B33 (A**2) : -17.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.028 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6337 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5787 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8559 ; 1.409 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13425 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 765 ; 6.216 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 277 ;32.865 ;23.827 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1069 ;14.736 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 844 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7156 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1487 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 4 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.063 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -K, -H, -L REMARK 3 TWIN FRACTION : 0.412 REMARK 3 TWIN DOMAIN : 3 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.456 REMARK 3 TWIN DOMAIN : 4 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5OGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541870 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52771 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 38.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 2.799 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.44 REMARK 200 R MERGE FOR SHELL (I) : 0.79900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4I07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.14 M AMMONIUM ACETATE, 0.07 M SODIUM REMARK 280 CITRATE, 21% PEG 400 C (PROTEIN) = 3.4 MG/ML RATIO PROTEIN : REMARK 280 RESERVOIR : H2O = 2:0.5:0.5UL CRYOCOOLED IN MOTHER LIQUOR, PH REMARK 280 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.13000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 95 -148.65 61.86 REMARK 500 SER A 162 -159.61 -104.48 REMARK 500 HIS A 167 45.84 34.66 REMARK 500 ASN A 293 168.09 60.26 REMARK 500 ALA A 319 -156.10 -149.93 REMARK 500 SER B 95 -156.33 70.00 REMARK 500 SER B 162 -162.59 -105.83 REMARK 500 HIS B 167 48.67 32.84 REMARK 500 LYS B 208 43.36 -93.07 REMARK 500 ASN B 281 53.25 39.80 REMARK 500 LYS B 282 -10.13 78.16 REMARK 500 ASN B 293 172.75 63.62 REMARK 500 ALA B 319 -169.29 -162.73 REMARK 500 SER C 95 -146.71 66.21 REMARK 500 HIS C 167 58.18 26.35 REMARK 500 GLN C 201 35.58 73.80 REMARK 500 LYS C 282 -6.85 67.80 REMARK 500 ASN C 293 168.18 65.20 REMARK 500 CYS C 311 16.62 58.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9U8 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 9U8 B 1001 and CYS B REMARK 800 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 9U8 C 1001 and CYS C REMARK 800 100 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S3Q RELATED DB: PDB REMARK 900 3S3Q CONTAINS THE SAME PROTEIN COMPLEXED WITH K11017 INHIBITOR REMARK 900 RELATED ID: 3S3R RELATED DB: PDB REMARK 900 3S3R CONTAINS THE SAME PROTEIN COMPLEXED WITH K11777 INHIBITOR REMARK 900 RELATED ID: 3QSD RELATED DB: PDB REMARK 900 3QSD CONTAINS THE SAME PROTEIN COMPLEXED WITH CA074 INHIBITOR REMARK 900 RELATED ID: 4I07 RELATED DB: PDB REMARK 900 4I07 CONTAINS THE SAME PROTEIN WITHOUT ANY INHIBITOR REMARK 900 RELATED ID: 4I05 RELATED DB: PDB REMARK 900 4I05 CONTAINS THE SAME PROTEIN IN THE FORM OF INTERMEDIATE REMARK 900 RELATED ID: 4I04 RELATED DB: PDB REMARK 900 4I04 CONTAINS THE SAME PROTEIN IN THE FORM OF ZYMOGEN DBREF 5OGQ A 70 323 UNP Q8MNY2 Q8MNY2_SCHMA 87 340 DBREF 5OGQ B 70 323 UNP Q8MNY2 Q8MNY2_SCHMA 87 340 DBREF 5OGQ C 70 323 UNP Q8MNY2 Q8MNY2_SCHMA 87 340 SEQADV 5OGQ ALA A 168 UNP Q8MNY2 THR 185 ENGINEERED MUTATION SEQADV 5OGQ ALA A 283 UNP Q8MNY2 THR 300 ENGINEERED MUTATION SEQADV 5OGQ ALA B 168 UNP Q8MNY2 THR 185 ENGINEERED MUTATION SEQADV 5OGQ ALA B 283 UNP Q8MNY2 THR 300 ENGINEERED MUTATION SEQADV 5OGQ ALA C 168 UNP Q8MNY2 THR 185 ENGINEERED MUTATION SEQADV 5OGQ ALA C 283 UNP Q8MNY2 THR 300 ENGINEERED MUTATION SEQRES 1 A 254 VAL GLU ILE PRO SER SER PHE ASP SER ARG LYS LYS TRP SEQRES 2 A 254 PRO ARG CYS LYS SER ILE ALA THR ILE ARG ASP GLN SER SEQRES 3 A 254 ARG CYS GLY SER CYS TRP ALA PHE GLY ALA VAL GLU ALA SEQRES 4 A 254 MET SER ASP ARG SER CYS ILE GLN SER GLY GLY LYS GLN SEQRES 5 A 254 ASN VAL GLU LEU SER ALA VAL ASP LEU LEU SER CYS CYS SEQRES 6 A 254 GLU SER CYS GLY LEU GLY CYS GLU GLY GLY ILE LEU GLY SEQRES 7 A 254 PRO ALA TRP ASP TYR TRP VAL LYS GLU GLY ILE VAL THR SEQRES 8 A 254 GLY SER SER LYS GLU ASN HIS ALA GLY CYS GLU PRO TYR SEQRES 9 A 254 PRO PHE PRO LYS CYS GLU HIS HIS THR LYS GLY LYS TYR SEQRES 10 A 254 PRO PRO CYS GLY SER LYS ILE TYR LYS THR PRO ARG CYS SEQRES 11 A 254 LYS GLN THR CYS GLN LYS LYS TYR LYS THR PRO TYR THR SEQRES 12 A 254 GLN ASP LYS HIS ARG GLY LYS SER SER TYR ASN VAL LYS SEQRES 13 A 254 ASN ASP GLU LYS ALA ILE GLN LYS GLU ILE MET LYS TYR SEQRES 14 A 254 GLY PRO VAL GLU ALA GLY PHE THR VAL TYR GLU ASP PHE SEQRES 15 A 254 LEU ASN TYR LYS SER GLY ILE TYR LYS HIS ILE THR GLY SEQRES 16 A 254 GLU THR LEU GLY GLY HIS ALA ILE ARG ILE ILE GLY TRP SEQRES 17 A 254 GLY VAL GLU ASN LYS ALA PRO TYR TRP LEU ILE ALA ASN SEQRES 18 A 254 SER TRP ASN GLU ASP TRP GLY GLU ASN GLY TYR PHE ARG SEQRES 19 A 254 ILE VAL ARG GLY ARG ASP GLU CYS SER ILE GLU SER GLU SEQRES 20 A 254 VAL THR ALA GLY ARG ILE ASN SEQRES 1 B 254 VAL GLU ILE PRO SER SER PHE ASP SER ARG LYS LYS TRP SEQRES 2 B 254 PRO ARG CYS LYS SER ILE ALA THR ILE ARG ASP GLN SER SEQRES 3 B 254 ARG CYS GLY SER CYS TRP ALA PHE GLY ALA VAL GLU ALA SEQRES 4 B 254 MET SER ASP ARG SER CYS ILE GLN SER GLY GLY LYS GLN SEQRES 5 B 254 ASN VAL GLU LEU SER ALA VAL ASP LEU LEU SER CYS CYS SEQRES 6 B 254 GLU SER CYS GLY LEU GLY CYS GLU GLY GLY ILE LEU GLY SEQRES 7 B 254 PRO ALA TRP ASP TYR TRP VAL LYS GLU GLY ILE VAL THR SEQRES 8 B 254 GLY SER SER LYS GLU ASN HIS ALA GLY CYS GLU PRO TYR SEQRES 9 B 254 PRO PHE PRO LYS CYS GLU HIS HIS THR LYS GLY LYS TYR SEQRES 10 B 254 PRO PRO CYS GLY SER LYS ILE TYR LYS THR PRO ARG CYS SEQRES 11 B 254 LYS GLN THR CYS GLN LYS LYS TYR LYS THR PRO TYR THR SEQRES 12 B 254 GLN ASP LYS HIS ARG GLY LYS SER SER TYR ASN VAL LYS SEQRES 13 B 254 ASN ASP GLU LYS ALA ILE GLN LYS GLU ILE MET LYS TYR SEQRES 14 B 254 GLY PRO VAL GLU ALA GLY PHE THR VAL TYR GLU ASP PHE SEQRES 15 B 254 LEU ASN TYR LYS SER GLY ILE TYR LYS HIS ILE THR GLY SEQRES 16 B 254 GLU THR LEU GLY GLY HIS ALA ILE ARG ILE ILE GLY TRP SEQRES 17 B 254 GLY VAL GLU ASN LYS ALA PRO TYR TRP LEU ILE ALA ASN SEQRES 18 B 254 SER TRP ASN GLU ASP TRP GLY GLU ASN GLY TYR PHE ARG SEQRES 19 B 254 ILE VAL ARG GLY ARG ASP GLU CYS SER ILE GLU SER GLU SEQRES 20 B 254 VAL THR ALA GLY ARG ILE ASN SEQRES 1 C 254 VAL GLU ILE PRO SER SER PHE ASP SER ARG LYS LYS TRP SEQRES 2 C 254 PRO ARG CYS LYS SER ILE ALA THR ILE ARG ASP GLN SER SEQRES 3 C 254 ARG CYS GLY SER CYS TRP ALA PHE GLY ALA VAL GLU ALA SEQRES 4 C 254 MET SER ASP ARG SER CYS ILE GLN SER GLY GLY LYS GLN SEQRES 5 C 254 ASN VAL GLU LEU SER ALA VAL ASP LEU LEU SER CYS CYS SEQRES 6 C 254 GLU SER CYS GLY LEU GLY CYS GLU GLY GLY ILE LEU GLY SEQRES 7 C 254 PRO ALA TRP ASP TYR TRP VAL LYS GLU GLY ILE VAL THR SEQRES 8 C 254 GLY SER SER LYS GLU ASN HIS ALA GLY CYS GLU PRO TYR SEQRES 9 C 254 PRO PHE PRO LYS CYS GLU HIS HIS THR LYS GLY LYS TYR SEQRES 10 C 254 PRO PRO CYS GLY SER LYS ILE TYR LYS THR PRO ARG CYS SEQRES 11 C 254 LYS GLN THR CYS GLN LYS LYS TYR LYS THR PRO TYR THR SEQRES 12 C 254 GLN ASP LYS HIS ARG GLY LYS SER SER TYR ASN VAL LYS SEQRES 13 C 254 ASN ASP GLU LYS ALA ILE GLN LYS GLU ILE MET LYS TYR SEQRES 14 C 254 GLY PRO VAL GLU ALA GLY PHE THR VAL TYR GLU ASP PHE SEQRES 15 C 254 LEU ASN TYR LYS SER GLY ILE TYR LYS HIS ILE THR GLY SEQRES 16 C 254 GLU THR LEU GLY GLY HIS ALA ILE ARG ILE ILE GLY TRP SEQRES 17 C 254 GLY VAL GLU ASN LYS ALA PRO TYR TRP LEU ILE ALA ASN SEQRES 18 C 254 SER TRP ASN GLU ASP TRP GLY GLU ASN GLY TYR PHE ARG SEQRES 19 C 254 ILE VAL ARG GLY ARG ASP GLU CYS SER ILE GLU SER GLU SEQRES 20 C 254 VAL THR ALA GLY ARG ILE ASN HET 9U8 A1001 46 HET 9U8 B1001 46 HET ACT B1002 4 HET 9U8 C1001 46 HETNAM 9U8 ETHYL 1-[[(2~{S})-3-(4-HYDROXYPHENYL)-1-OXIDANYLIDENE- HETNAM 2 9U8 1-[[(3~{S})-1-PHENYL-5-PYRIDIN-2-YLSULFONYL-PENTAN-3- HETNAM 3 9U8 YL]AMINO]PROPAN-2-YL]CARBAMOYL]PIPERIDINE-4- HETNAM 4 9U8 CARBOXYLATE HETNAM ACT ACETATE ION FORMUL 4 9U8 3(C34 H42 N4 O7 S) FORMUL 6 ACT C2 H3 O2 1- FORMUL 8 HOH *442(H2 O) HELIX 1 AA1 SER A 78 TRP A 82 1 5 HELIX 2 AA2 CYS A 85 THR A 90 5 6 HELIX 3 AA3 SER A 99 SER A 117 1 19 HELIX 4 AA4 SER A 126 CYS A 134 1 9 HELIX 5 AA5 GLU A 135 GLY A 138 5 4 HELIX 6 AA6 LEU A 139 GLY A 143 5 5 HELIX 7 AA7 ILE A 145 GLU A 156 1 12 HELIX 8 AA8 PRO A 210 LYS A 215 5 6 HELIX 9 AA9 ASP A 227 GLY A 239 1 13 HELIX 10 AB1 ASP A 250 TYR A 254 5 5 HELIX 11 AB2 ASP A 309 ILE A 313 5 5 HELIX 12 AB3 SER B 78 TRP B 82 1 5 HELIX 13 AB4 CYS B 85 THR B 90 5 6 HELIX 14 AB5 SER B 99 GLY B 118 1 20 HELIX 15 AB6 SER B 126 CYS B 134 1 9 HELIX 16 AB7 LEU B 139 GLY B 143 5 5 HELIX 17 AB8 ILE B 145 GLU B 156 1 12 HELIX 18 AB9 PRO B 210 ASP B 214 5 5 HELIX 19 AC1 ASP B 227 GLY B 239 1 13 HELIX 20 AC2 ASP B 250 TYR B 254 5 5 HELIX 21 AC3 ASP B 309 ILE B 313 5 5 HELIX 22 AC4 SER C 78 TRP C 82 1 5 HELIX 23 AC5 SER C 99 SER C 117 1 19 HELIX 24 AC6 SER C 126 CYS C 134 1 9 HELIX 25 AC7 LEU C 139 GLY C 143 5 5 HELIX 26 AC8 ILE C 145 GLU C 156 1 12 HELIX 27 AC9 ASP C 227 GLY C 239 1 13 HELIX 28 AD1 ASP C 250 TYR C 254 5 5 HELIX 29 AD2 ASP C 309 ILE C 313 5 5 SHEET 1 AA1 3 PHE A 76 ASP A 77 0 SHEET 2 AA1 3 THR A 266 GLU A 280 -1 O TRP A 277 N PHE A 76 SHEET 3 AA1 3 VAL A 241 TYR A 248 -1 N PHE A 245 O HIS A 270 SHEET 1 AA2 5 PHE A 76 ASP A 77 0 SHEET 2 AA2 5 THR A 266 GLU A 280 -1 O TRP A 277 N PHE A 76 SHEET 3 AA2 5 ALA A 283 ALA A 289 -1 O ALA A 289 N ARG A 273 SHEET 4 AA2 5 TYR A 301 VAL A 305 -1 O PHE A 302 N ILE A 288 SHEET 5 AA2 5 ILE A 258 TYR A 259 1 N TYR A 259 O ARG A 303 SHEET 1 AA3 2 TYR A 222 ASN A 223 0 SHEET 2 AA3 2 THR A 318 ALA A 319 -1 O ALA A 319 N TYR A 222 SHEET 1 AA4 5 PHE B 76 ASP B 77 0 SHEET 2 AA4 5 THR B 266 GLU B 280 -1 O TRP B 277 N PHE B 76 SHEET 3 AA4 5 VAL B 241 TYR B 248 -1 N VAL B 247 O LEU B 267 SHEET 4 AA4 5 GLU B 316 ARG B 321 -1 O THR B 318 N GLU B 242 SHEET 5 AA4 5 SER B 220 VAL B 224 -1 N VAL B 224 O VAL B 317 SHEET 1 AA5 5 PHE B 76 ASP B 77 0 SHEET 2 AA5 5 THR B 266 GLU B 280 -1 O TRP B 277 N PHE B 76 SHEET 3 AA5 5 ALA B 283 ALA B 289 -1 O ALA B 289 N ARG B 273 SHEET 4 AA5 5 TYR B 301 VAL B 305 -1 O PHE B 302 N ILE B 288 SHEET 5 AA5 5 ILE B 258 TYR B 259 1 N TYR B 259 O ARG B 303 SHEET 1 AA6 3 PHE C 76 ASP C 77 0 SHEET 2 AA6 3 THR C 266 GLU C 280 -1 O TRP C 277 N PHE C 76 SHEET 3 AA6 3 VAL C 241 TYR C 248 -1 N PHE C 245 O HIS C 270 SHEET 1 AA7 5 PHE C 76 ASP C 77 0 SHEET 2 AA7 5 THR C 266 GLU C 280 -1 O TRP C 277 N PHE C 76 SHEET 3 AA7 5 ALA C 283 ALA C 289 -1 O TYR C 285 N GLY C 278 SHEET 4 AA7 5 TYR C 301 VAL C 305 -1 O PHE C 302 N ILE C 288 SHEET 5 AA7 5 ILE C 258 TYR C 259 1 N TYR C 259 O ARG C 303 SHEET 1 AA8 2 SER C 220 ASN C 223 0 SHEET 2 AA8 2 THR C 318 ARG C 321 -1 O ARG C 321 N SER C 220 SSBOND 1 CYS A 85 CYS A 114 1555 1555 2.06 SSBOND 2 CYS A 97 CYS A 141 1555 1555 2.05 SSBOND 3 CYS A 133 CYS A 199 1555 1555 2.05 SSBOND 4 CYS A 134 CYS A 137 1555 1555 2.05 SSBOND 5 CYS A 170 CYS A 203 1555 1555 2.05 SSBOND 6 CYS A 178 CYS A 189 1555 1555 2.01 SSBOND 7 CYS B 85 CYS B 114 1555 1555 2.07 SSBOND 8 CYS B 97 CYS B 141 1555 1555 2.07 SSBOND 9 CYS B 133 CYS B 199 1555 1555 2.04 SSBOND 10 CYS B 134 CYS B 137 1555 1555 2.07 SSBOND 11 CYS B 170 CYS B 203 1555 1555 2.04 SSBOND 12 CYS B 178 CYS B 189 1555 1555 2.02 SSBOND 13 CYS C 85 CYS C 114 1555 1555 2.05 SSBOND 14 CYS C 97 CYS C 141 1555 1555 2.06 SSBOND 15 CYS C 133 CYS C 199 1555 1555 2.04 SSBOND 16 CYS C 134 CYS C 137 1555 1555 2.04 SSBOND 17 CYS C 170 CYS C 203 1555 1555 2.04 SSBOND 18 CYS C 178 CYS C 189 1555 1555 2.04 LINK SG CYS A 100 C27 9U8 A1001 1555 1555 1.76 LINK SG CYS B 100 C27 9U8 B1001 1555 1555 1.77 LINK SG CYS C 100 C27 9U8 C1001 1555 1555 1.78 SITE 1 AC1 21 ARG A 79 LYS A 80 PRO A 83 ARG A 84 SITE 2 AC1 21 GLN A 94 GLY A 98 CYS A 100 TRP A 101 SITE 3 AC1 21 GLY A 138 LEU A 139 CYS A 141 GLU A 142 SITE 4 AC1 21 GLY A 143 GLY A 144 GLY A 269 HIS A 270 SITE 5 AC1 21 TRP A 292 GLU A 316 HOH A1137 HOH A1194 SITE 6 AC1 21 HOH A1243 SITE 1 AC2 3 PHE B 76 ASP B 77 HOH B1196 SITE 1 AC3 26 ARG B 79 PRO B 83 ARG B 84 ALA B 89 SITE 2 AC3 26 GLN B 94 GLY B 98 SER B 99 TRP B 101 SITE 3 AC3 26 ALA B 102 PHE B 103 GLY B 104 GLY B 138 SITE 4 AC3 26 LEU B 139 GLY B 143 GLY B 144 ILE B 145 SITE 5 AC3 26 LEU B 146 GLY B 244 GLY B 269 HIS B 270 SITE 6 AC3 26 ALA B 271 TRP B 292 GLU B 316 HOH B1122 SITE 7 AC3 26 HOH B1174 HOH B1215 SITE 1 AC4 27 ARG C 79 PRO C 83 ARG C 84 ALA C 89 SITE 2 AC4 27 GLN C 94 GLY C 98 SER C 99 TRP C 101 SITE 3 AC4 27 ALA C 102 PHE C 103 GLY C 104 GLY C 138 SITE 4 AC4 27 LEU C 139 CYS C 141 GLU C 142 GLY C 143 SITE 5 AC4 27 GLY C 144 ILE C 145 LEU C 146 GLY C 244 SITE 6 AC4 27 GLY C 269 HIS C 270 ALA C 271 TRP C 292 SITE 7 AC4 27 GLU C 316 HOH C1131 HOH C1134 CRYST1 82.390 82.390 99.390 90.00 90.00 120.00 P 31 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012137 0.007008 0.000000 0.00000 SCALE2 0.000000 0.014015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010061 0.00000