HEADER SUGAR BINDING PROTEIN 13-JUL-17 5OGZ TITLE CRYSTAL STRUCTURE OF RUMINICLOSTRIDIUM THERMOCELLUM BETA-GLUCOSIDASE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-D-GLUCOSIDE GLUCOHYDROLASE,CELLOBIASE,GENTIOBIASE; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINICLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 GENE: BGLA, CTHE_0212; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS BETA/ALPHA 8 TIM BARREL FOLD CELLOBIOSE BINDING, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.SALAMA-ALBER,E.BAYER REVDAT 3 17-JAN-24 5OGZ 1 REMARK REVDAT 2 16-OCT-19 5OGZ 1 REMARK REVDAT 1 01-AUG-18 5OGZ 0 JRNL AUTH O.SALAMA-ALBER,E.BAYER JRNL TITL CRYSTAL STRUCTURE OF RUMINICLOSTRIDIUM THERMOCELLUM JRNL TITL 2 BETA-GLUCOSIDASE A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 112516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5902 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8217 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 430 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 479 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.765 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7609 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7081 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10304 ; 2.021 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16359 ; 1.119 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 912 ; 6.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 374 ;35.302 ;24.439 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1310 ;14.139 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.387 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1061 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8616 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1810 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3630 ; 1.826 ; 1.759 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3629 ; 1.826 ; 1.758 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4548 ; 2.547 ; 2.637 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4549 ; 2.547 ; 2.637 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3979 ; 2.648 ; 2.020 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3979 ; 2.648 ; 2.020 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5757 ; 3.963 ; 2.910 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9223 ; 5.374 ;14.643 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9224 ; 5.374 ;14.644 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 120756 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 93.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1QOX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE MONOHYDRATE, BIS-TRIS, REMARK 280 POLYETHYLENE GLYCOL 3,350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.11000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 MET B 1 REMARK 465 HIS B 451 REMARK 465 HIS B 452 REMARK 465 HIS B 453 REMARK 465 HIS B 454 REMARK 465 HIS B 455 REMARK 465 HIS B 456 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 248 N CA C O CB CG CD REMARK 480 ARG A 248 NE CZ NH1 NH2 REMARK 480 ARG B 248 N CA C O CB CG CD REMARK 480 ARG B 248 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 823 O HOH A 858 1.83 REMARK 500 OH TYR B 250 O HOH B 601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 261 OD2 ASP B 426 1565 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY B 247 C ARG B 248 N -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 52 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 LYS A 69 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 LYS A 69 CD - CE - NZ ANGL. DEV. = 23.3 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 156 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 375 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 434 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 LYS B 69 CD - CE - NZ ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG B 77 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 77 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 375 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 417 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 54 -134.35 59.22 REMARK 500 TRP A 122 -4.09 93.75 REMARK 500 ASP A 123 56.05 -98.28 REMARK 500 ALA A 246 -120.95 -103.96 REMARK 500 TYR A 296 -36.79 -133.26 REMARK 500 ASP A 304 67.29 -151.83 REMARK 500 ASN A 367 3.76 -64.41 REMARK 500 GLU A 371 77.17 -100.81 REMARK 500 TRP A 410 -128.03 54.79 REMARK 500 ALA B 54 -125.15 53.57 REMARK 500 TRP B 122 -8.49 100.76 REMARK 500 ALA B 246 -121.58 -97.80 REMARK 500 TYR B 331 86.37 -152.66 REMARK 500 TRP B 410 -129.55 51.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 121 TRP B 122 149.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 DBREF 5OGZ A 3 448 UNP P26208 BGLA_CLOTH 3 448 DBREF 5OGZ B 3 448 UNP P26208 BGLA_CLOTH 3 448 SEQADV 5OGZ MET A 1 UNP P26208 INITIATING METHIONINE SEQADV 5OGZ ALA A 2 UNP P26208 EXPRESSION TAG SEQADV 5OGZ LEU A 449 UNP P26208 EXPRESSION TAG SEQADV 5OGZ GLU A 450 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS A 451 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS A 452 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS A 453 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS A 454 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS A 455 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS A 456 UNP P26208 EXPRESSION TAG SEQADV 5OGZ MET B 1 UNP P26208 INITIATING METHIONINE SEQADV 5OGZ ALA B 2 UNP P26208 EXPRESSION TAG SEQADV 5OGZ LEU B 449 UNP P26208 EXPRESSION TAG SEQADV 5OGZ GLU B 450 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS B 451 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS B 452 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS B 453 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS B 454 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS B 455 UNP P26208 EXPRESSION TAG SEQADV 5OGZ HIS B 456 UNP P26208 EXPRESSION TAG SEQRES 1 A 456 MET ALA LYS ILE THR PHE PRO LYS ASP PHE ILE TRP GLY SEQRES 2 A 456 SER ALA THR ALA ALA TYR GLN ILE GLU GLY ALA TYR ASN SEQRES 3 A 456 GLU ASP GLY LYS GLY GLU SER ILE TRP ASP ARG PHE SER SEQRES 4 A 456 HIS THR PRO GLY ASN ILE ALA ASP GLY HIS THR GLY ASP SEQRES 5 A 456 VAL ALA CYS ASP HIS TYR HIS ARG TYR GLU GLU ASP ILE SEQRES 6 A 456 LYS ILE MET LYS GLU ILE GLY ILE LYS SER TYR ARG PHE SEQRES 7 A 456 SER ILE SER TRP PRO ARG ILE PHE PRO GLU GLY THR GLY SEQRES 8 A 456 LYS LEU ASN GLN LYS GLY LEU ASP PHE TYR LYS ARG LEU SEQRES 9 A 456 THR ASN LEU LEU LEU GLU ASN GLY ILE MET PRO ALA ILE SEQRES 10 A 456 THR LEU TYR HIS TRP ASP LEU PRO GLN LYS LEU GLN ASP SEQRES 11 A 456 LYS GLY GLY TRP LYS ASN ARG ASP THR THR ASP TYR PHE SEQRES 12 A 456 THR GLU TYR SER GLU VAL ILE PHE LYS ASN LEU GLY ASP SEQRES 13 A 456 ILE VAL PRO ILE TRP PHE THR HIS ASN GLU PRO GLY VAL SEQRES 14 A 456 VAL SER LEU LEU GLY HIS PHE LEU GLY ILE HIS ALA PRO SEQRES 15 A 456 GLY ILE LYS ASP LEU ARG THR SER LEU GLU VAL SER HIS SEQRES 16 A 456 ASN LEU LEU LEU SER HIS GLY LYS ALA VAL LYS LEU PHE SEQRES 17 A 456 ARG GLU MET ASN ILE ASP ALA GLN ILE GLY ILE ALA LEU SEQRES 18 A 456 ASN LEU SER TYR HIS TYR PRO ALA SER GLU LYS ALA GLU SEQRES 19 A 456 ASP ILE GLU ALA ALA GLU LEU SER PHE SER LEU ALA GLY SEQRES 20 A 456 ARG TRP TYR LEU ASP PRO VAL LEU LYS GLY ARG TYR PRO SEQRES 21 A 456 GLU ASN ALA LEU LYS LEU TYR LYS LYS LYS GLY ILE GLU SEQRES 22 A 456 LEU SER PHE PRO GLU ASP ASP LEU LYS LEU ILE SER GLN SEQRES 23 A 456 PRO ILE ASP PHE ILE ALA PHE ASN ASN TYR SER SER GLU SEQRES 24 A 456 PHE ILE LYS TYR ASP PRO SER SER GLU SER GLY PHE SER SEQRES 25 A 456 PRO ALA ASN SER ILE LEU GLU LYS PHE GLU LYS THR ASP SEQRES 26 A 456 MET GLY TRP ILE ILE TYR PRO GLU GLY LEU TYR ASP LEU SEQRES 27 A 456 LEU MET LEU LEU ASP ARG ASP TYR GLY LYS PRO ASN ILE SEQRES 28 A 456 VAL ILE SER GLU ASN GLY ALA ALA PHE LYS ASP GLU ILE SEQRES 29 A 456 GLY SER ASN GLY LYS ILE GLU ASP THR LYS ARG ILE GLN SEQRES 30 A 456 TYR LEU LYS ASP TYR LEU THR GLN ALA HIS ARG ALA ILE SEQRES 31 A 456 GLN ASP GLY VAL ASN LEU LYS ALA TYR TYR LEU TRP SER SEQRES 32 A 456 LEU LEU ASP ASN PHE GLU TRP ALA TYR GLY TYR ASN LYS SEQRES 33 A 456 ARG PHE GLY ILE VAL HIS VAL ASN PHE ASP THR LEU GLU SEQRES 34 A 456 ARG LYS ILE LYS ASP SER GLY TYR TRP TYR LYS GLU VAL SEQRES 35 A 456 ILE LYS ASN ASN GLY PHE LEU GLU HIS HIS HIS HIS HIS SEQRES 36 A 456 HIS SEQRES 1 B 456 MET ALA LYS ILE THR PHE PRO LYS ASP PHE ILE TRP GLY SEQRES 2 B 456 SER ALA THR ALA ALA TYR GLN ILE GLU GLY ALA TYR ASN SEQRES 3 B 456 GLU ASP GLY LYS GLY GLU SER ILE TRP ASP ARG PHE SER SEQRES 4 B 456 HIS THR PRO GLY ASN ILE ALA ASP GLY HIS THR GLY ASP SEQRES 5 B 456 VAL ALA CYS ASP HIS TYR HIS ARG TYR GLU GLU ASP ILE SEQRES 6 B 456 LYS ILE MET LYS GLU ILE GLY ILE LYS SER TYR ARG PHE SEQRES 7 B 456 SER ILE SER TRP PRO ARG ILE PHE PRO GLU GLY THR GLY SEQRES 8 B 456 LYS LEU ASN GLN LYS GLY LEU ASP PHE TYR LYS ARG LEU SEQRES 9 B 456 THR ASN LEU LEU LEU GLU ASN GLY ILE MET PRO ALA ILE SEQRES 10 B 456 THR LEU TYR HIS TRP ASP LEU PRO GLN LYS LEU GLN ASP SEQRES 11 B 456 LYS GLY GLY TRP LYS ASN ARG ASP THR THR ASP TYR PHE SEQRES 12 B 456 THR GLU TYR SER GLU VAL ILE PHE LYS ASN LEU GLY ASP SEQRES 13 B 456 ILE VAL PRO ILE TRP PHE THR HIS ASN GLU PRO GLY VAL SEQRES 14 B 456 VAL SER LEU LEU GLY HIS PHE LEU GLY ILE HIS ALA PRO SEQRES 15 B 456 GLY ILE LYS ASP LEU ARG THR SER LEU GLU VAL SER HIS SEQRES 16 B 456 ASN LEU LEU LEU SER HIS GLY LYS ALA VAL LYS LEU PHE SEQRES 17 B 456 ARG GLU MET ASN ILE ASP ALA GLN ILE GLY ILE ALA LEU SEQRES 18 B 456 ASN LEU SER TYR HIS TYR PRO ALA SER GLU LYS ALA GLU SEQRES 19 B 456 ASP ILE GLU ALA ALA GLU LEU SER PHE SER LEU ALA GLY SEQRES 20 B 456 ARG TRP TYR LEU ASP PRO VAL LEU LYS GLY ARG TYR PRO SEQRES 21 B 456 GLU ASN ALA LEU LYS LEU TYR LYS LYS LYS GLY ILE GLU SEQRES 22 B 456 LEU SER PHE PRO GLU ASP ASP LEU LYS LEU ILE SER GLN SEQRES 23 B 456 PRO ILE ASP PHE ILE ALA PHE ASN ASN TYR SER SER GLU SEQRES 24 B 456 PHE ILE LYS TYR ASP PRO SER SER GLU SER GLY PHE SER SEQRES 25 B 456 PRO ALA ASN SER ILE LEU GLU LYS PHE GLU LYS THR ASP SEQRES 26 B 456 MET GLY TRP ILE ILE TYR PRO GLU GLY LEU TYR ASP LEU SEQRES 27 B 456 LEU MET LEU LEU ASP ARG ASP TYR GLY LYS PRO ASN ILE SEQRES 28 B 456 VAL ILE SER GLU ASN GLY ALA ALA PHE LYS ASP GLU ILE SEQRES 29 B 456 GLY SER ASN GLY LYS ILE GLU ASP THR LYS ARG ILE GLN SEQRES 30 B 456 TYR LEU LYS ASP TYR LEU THR GLN ALA HIS ARG ALA ILE SEQRES 31 B 456 GLN ASP GLY VAL ASN LEU LYS ALA TYR TYR LEU TRP SER SEQRES 32 B 456 LEU LEU ASP ASN PHE GLU TRP ALA TYR GLY TYR ASN LYS SEQRES 33 B 456 ARG PHE GLY ILE VAL HIS VAL ASN PHE ASP THR LEU GLU SEQRES 34 B 456 ARG LYS ILE LYS ASP SER GLY TYR TRP TYR LYS GLU VAL SEQRES 35 B 456 ILE LYS ASN ASN GLY PHE LEU GLU HIS HIS HIS HIS HIS SEQRES 36 B 456 HIS HET SO4 A 501 5 HET SO4 B 501 5 HET SO4 B 502 5 HET EDO B 503 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *479(H2 O) HELIX 1 AA1 ALA A 17 GLU A 22 1 6 HELIX 2 AA2 SER A 33 HIS A 40 1 8 HELIX 3 AA3 ILE A 45 HIS A 49 5 5 HELIX 4 AA4 ASP A 56 GLY A 72 1 17 HELIX 5 AA5 SER A 81 PHE A 86 1 6 HELIX 6 AA6 ASN A 94 ASN A 111 1 18 HELIX 7 AA7 PRO A 125 LYS A 131 1 7 HELIX 8 AA8 GLY A 132 ASN A 136 5 5 HELIX 9 AA9 ARG A 137 GLY A 155 1 19 HELIX 10 AB1 GLU A 166 PHE A 176 1 11 HELIX 11 AB2 ASP A 186 MET A 211 1 26 HELIX 12 AB3 LYS A 232 ALA A 246 1 15 HELIX 13 AB4 ALA A 246 GLY A 257 1 12 HELIX 14 AB5 PRO A 260 LYS A 270 1 11 HELIX 15 AB6 ASP A 279 SER A 285 1 7 HELIX 16 AB7 ALA A 314 GLU A 319 1 6 HELIX 17 AB8 PRO A 332 TYR A 346 1 15 HELIX 18 AB9 ASP A 372 ASP A 392 1 21 HELIX 19 AC1 GLU A 409 LYS A 416 5 8 HELIX 20 AC2 LYS A 433 ASN A 446 1 14 HELIX 21 AC3 ALA B 17 GLU B 22 1 6 HELIX 22 AC4 SER B 33 THR B 41 1 9 HELIX 23 AC5 ILE B 45 HIS B 49 5 5 HELIX 24 AC6 ASP B 56 GLY B 72 1 17 HELIX 25 AC7 SER B 81 PHE B 86 1 6 HELIX 26 AC8 ASN B 94 ASN B 111 1 18 HELIX 27 AC9 PRO B 125 LYS B 131 1 7 HELIX 28 AD1 GLY B 132 ASN B 136 5 5 HELIX 29 AD2 ARG B 137 GLY B 155 1 19 HELIX 30 AD3 ASP B 156 VAL B 158 5 3 HELIX 31 AD4 GLU B 166 PHE B 176 1 11 HELIX 32 AD5 ASP B 186 MET B 211 1 26 HELIX 33 AD6 LYS B 232 ALA B 246 1 15 HELIX 34 AD7 GLY B 247 GLY B 257 1 11 HELIX 35 AD8 PRO B 260 LYS B 270 1 11 HELIX 36 AD9 GLU B 278 SER B 285 1 8 HELIX 37 AE1 ALA B 314 GLU B 319 1 6 HELIX 38 AE2 PRO B 332 TYR B 346 1 15 HELIX 39 AE3 ASP B 372 ASP B 392 1 21 HELIX 40 AE4 GLU B 409 LYS B 416 5 8 HELIX 41 AE5 LYS B 433 ASN B 446 1 14 SHEET 1 AA1 2 LYS A 3 THR A 5 0 SHEET 2 AA1 2 GLY A 447 LEU A 449 -1 O PHE A 448 N ILE A 4 SHEET 1 AA2 9 ILE A 11 ALA A 15 0 SHEET 2 AA2 9 SER A 75 SER A 79 1 O ARG A 77 N SER A 14 SHEET 3 AA2 9 MET A 114 TYR A 120 1 O THR A 118 N PHE A 78 SHEET 4 AA2 9 ILE A 160 ASN A 165 1 O PHE A 162 N ILE A 117 SHEET 5 AA2 9 GLN A 216 ASN A 222 1 O ALA A 220 N HIS A 164 SHEET 6 AA2 9 ILE A 291 ASN A 294 1 O ASN A 294 N LEU A 221 SHEET 7 AA2 9 ILE A 351 ASN A 356 1 O VAL A 352 N ILE A 291 SHEET 8 AA2 9 LEU A 396 TRP A 402 1 O LYS A 397 N ILE A 351 SHEET 9 AA2 9 ILE A 11 ALA A 15 1 N GLY A 13 O TYR A 399 SHEET 1 AA3 3 HIS A 226 PRO A 228 0 SHEET 2 AA3 3 GLU A 299 TYR A 303 1 O ILE A 301 N TYR A 227 SHEET 3 AA3 3 PHE A 311 PRO A 313 -1 O SER A 312 N LYS A 302 SHEET 1 AA4 2 VAL A 421 VAL A 423 0 SHEET 2 AA4 2 ARG A 430 ILE A 432 -1 O LYS A 431 N HIS A 422 SHEET 1 AA5 2 LYS B 3 THR B 5 0 SHEET 2 AA5 2 GLY B 447 LEU B 449 -1 O PHE B 448 N ILE B 4 SHEET 1 AA6 9 ILE B 11 ALA B 15 0 SHEET 2 AA6 9 SER B 75 SER B 79 1 O ARG B 77 N SER B 14 SHEET 3 AA6 9 MET B 114 TYR B 120 1 O THR B 118 N PHE B 78 SHEET 4 AA6 9 ILE B 160 ASN B 165 1 O PHE B 162 N ILE B 117 SHEET 5 AA6 9 GLN B 216 ASN B 222 1 O GLY B 218 N THR B 163 SHEET 6 AA6 9 ILE B 291 ASN B 294 1 O ASN B 294 N LEU B 221 SHEET 7 AA6 9 ASN B 350 ASN B 356 1 O VAL B 352 N ILE B 291 SHEET 8 AA6 9 ASN B 395 TRP B 402 1 O LYS B 397 N ILE B 351 SHEET 9 AA6 9 ILE B 11 ALA B 15 1 N GLY B 13 O TYR B 399 SHEET 1 AA7 3 HIS B 226 PRO B 228 0 SHEET 2 AA7 3 GLU B 299 TYR B 303 1 O ILE B 301 N TYR B 227 SHEET 3 AA7 3 PHE B 311 PRO B 313 -1 O SER B 312 N LYS B 302 SHEET 1 AA8 2 VAL B 421 VAL B 423 0 SHEET 2 AA8 2 ARG B 430 ILE B 432 -1 O LYS B 431 N HIS B 422 CISPEP 1 ALA A 181 PRO A 182 0 6.45 CISPEP 2 TRP A 402 SER A 403 0 1.16 CISPEP 3 ALA B 181 PRO B 182 0 4.28 CISPEP 4 TRP B 402 SER B 403 0 6.38 SITE 1 AC1 5 LYS A 302 PRO A 313 ALA A 314 ASN A 315 SITE 2 AC1 5 SER A 316 SITE 1 AC2 2 ARG B 137 LYS B 203 SITE 1 AC3 5 LYS B 302 PRO B 313 ALA B 314 ASN B 315 SITE 2 AC3 5 SER B 316 SITE 1 AC4 9 SER B 224 TYR B 225 ASN B 295 SER B 297 SITE 2 AC4 9 SER B 298 GLY B 334 LEU B 335 TYR B 382 SITE 3 AC4 9 HOH B 624 CRYST1 91.670 56.220 94.500 90.00 100.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010909 0.000000 0.001963 0.00000 SCALE2 0.000000 0.017787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010752 0.00000