HEADER PROTEIN BINDING 28-JUL-17 5OMB
TITLE CRYSTAL STRUCTURE OF K. LACTIS DDC2 N-TERMINUS IN COMPLEX WITH S.
TITLE 2 CEREVISIAE RFA1 N-OB DOMAIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: REPLICATION FACTOR A PROTEIN 1;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 1-132;
COMPND 5 SYNONYM: RF-A PROTEIN 1,DNA-BINDING PROTEIN BUF2,REPLICATION PROTEIN
COMPND 6 A 69 KDA DNA-BINDING SUBUNIT,SINGLE-STRANDED DNA-BINDING PROTEIN;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: DNA DAMAGE CHECKPOINT PROTEIN LCD1;
COMPND 10 CHAIN: C, D;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 559292;
SOURCE 5 STRAIN: ATCC 204508 / S288C;
SOURCE 6 GENE: RFA1, BUF2, RPA1, YAR007C, FUN3;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINF;
SOURCE 11 MOL_ID: 2;
SOURCE 12 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS (STRAIN ATCC 8585 / CBS
SOURCE 13 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37);
SOURCE 14 ORGANISM_COMMON: YEAST;
SOURCE 15 ORGANISM_TAXID: 284590;
SOURCE 16 STRAIN: ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
SOURCE 17 WM37;
SOURCE 18 GENE: LCD1, KLLA0C01892G;
SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 22 EXPRESSION_SYSTEM_PLASMID: POPINF
KEYWDS OLIGONUCLEOTIDE-BINDING FOLD, COILED-COIL DOMAIN, COMPLEX, NUCLEUS,
KEYWDS 2 PROTEIN BINDING
EXPDTA X-RAY DIFFRACTION
AUTHOR I.DESHPANDE,A.SEEBER,K.SHIMADA,J.J.KEUSCH,H.GUT,S.M.GASSER
REVDAT 3 06-NOV-24 5OMB 1 REMARK
REVDAT 2 01-NOV-17 5OMB 1 JRNL
REVDAT 1 25-OCT-17 5OMB 0
JRNL AUTH I.DESHPANDE,A.SEEBER,K.SHIMADA,J.J.KEUSCH,H.GUT,S.M.GASSER
JRNL TITL STRUCTURAL BASIS OF MEC1-DDC2-RPA ASSEMBLY AND ACTIVATION ON
JRNL TITL 2 SINGLE-STRANDED DNA AT SITES OF DAMAGE.
JRNL REF MOL. CELL V. 68 431 2017
JRNL REFN ISSN 1097-4164
JRNL PMID 29033322
JRNL DOI 10.1016/J.MOLCEL.2017.09.019
REMARK 2
REMARK 2 RESOLUTION. 1.94 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.5
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.76
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4
REMARK 3 NUMBER OF REFLECTIONS : 41015
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.187
REMARK 3 R VALUE (WORKING SET) : 0.185
REMARK 3 FREE R VALUE : 0.220
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990
REMARK 3 FREE R VALUE TEST SET COUNT : 2046
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.99
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.36
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2545
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2427
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2424
REMARK 3 BIN R VALUE (WORKING SET) : 0.2408
REMARK 3 BIN FREE R VALUE : 0.2808
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.75
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 121
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3655
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 7
REMARK 3 SOLVENT ATOMS : 202
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 36.95
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.92
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -10.23850
REMARK 3 B22 (A**2) : 1.50150
REMARK 3 B33 (A**2) : 8.73700
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.146
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.134
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.142
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.133
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3765 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 5055 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1442 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 125 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 524 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3765 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 480 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : 6 ; 1.000 ; HARMONIC
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 4505 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.03
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.80
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.56
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -27.0404 25.4087 61.3504
REMARK 3 T TENSOR
REMARK 3 T11: 0.0381 T22: -0.1759
REMARK 3 T33: -0.1497 T12: 0.0203
REMARK 3 T13: 0.0227 T23: 0.0305
REMARK 3 L TENSOR
REMARK 3 L11: 1.8493 L22: 6.9106
REMARK 3 L33: 2.6961 L12: 2.1150
REMARK 3 L13: -0.6256 L23: -0.0221
REMARK 3 S TENSOR
REMARK 3 S11: -0.0359 S12: -0.1092 S13: -0.1623
REMARK 3 S21: 0.6098 S22: 0.0164 S23: 0.0654
REMARK 3 S31: 0.3237 S32: 0.0109 S33: 0.0195
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 29.1973 68.5007 60.7921
REMARK 3 T TENSOR
REMARK 3 T11: -0.1328 T22: -0.1472
REMARK 3 T33: -0.0282 T12: 0.0225
REMARK 3 T13: -0.0322 T23: -0.1018
REMARK 3 L TENSOR
REMARK 3 L11: 4.2455 L22: 4.9956
REMARK 3 L33: 2.1421 L12: 2.2455
REMARK 3 L13: 0.7010 L23: 0.1834
REMARK 3 S TENSOR
REMARK 3 S11: -0.0239 S12: -0.5294 S13: 0.7243
REMARK 3 S21: 0.3215 S22: -0.2019 S23: 0.2671
REMARK 3 S31: -0.1904 S32: -0.0416 S33: 0.2259
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 1.3651 52.6081 12.9239
REMARK 3 T TENSOR
REMARK 3 T11: 0.1376 T22: -0.0332
REMARK 3 T33: -0.0359 T12: -0.0414
REMARK 3 T13: -0.0076 T23: 0.0262
REMARK 3 L TENSOR
REMARK 3 L11: 0.0000 L22: 0.0000
REMARK 3 L33: 0.0784 L12: -0.0971
REMARK 3 L13: 0.0639 L23: 0.1749
REMARK 3 S TENSOR
REMARK 3 S11: -0.1214 S12: 0.0107 S13: 0.0765
REMARK 3 S21: -0.0216 S22: -0.0483 S23: 0.0382
REMARK 3 S31: -0.1129 S32: -0.0202 S33: 0.1698
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { D|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -1.4262 42.2789 12.7490
REMARK 3 T TENSOR
REMARK 3 T11: 0.1168 T22: -0.0466
REMARK 3 T33: -0.0679 T12: 0.0140
REMARK 3 T13: 0.0267 T23: -0.0048
REMARK 3 L TENSOR
REMARK 3 L11: 0.0000 L22: 0.0000
REMARK 3 L33: 1.3160 L12: 0.0126
REMARK 3 L13: -0.0548 L23: -0.3139
REMARK 3 S TENSOR
REMARK 3 S11: -0.0793 S12: 0.0233 S13: 0.0037
REMARK 3 S21: -0.0510 S22: -0.0184 S23: -0.0195
REMARK 3 S31: 0.1712 S32: 0.2048 S33: 0.0978
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5OMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-17.
REMARK 100 THE DEPOSITION ID IS D_1200006035.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-APR-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06DA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41015
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0
REMARK 200 DATA REDUNDANCY : 11.40
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.11000
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99
REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3
REMARK 200 DATA REDUNDANCY IN SHELL : 11.00
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 1.57300
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD
REMARK 200 SOFTWARE USED: AUTOSOL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.50
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE TRIBASIC, 20%
REMARK 280 PEG 3350, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.02500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.23500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.47000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.23500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.02500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.47000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8070 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 27420 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -1
REMARK 465 PRO A 0
REMARK 465 MSE A 1
REMARK 465 SER A 2
REMARK 465 SER A 3
REMARK 465 SER A 37
REMARK 465 ASP A 38
REMARK 465 GLY A 39
REMARK 465 ALA A 40
REMARK 465 ASN A 41
REMARK 465 GLY B -1
REMARK 465 PRO B 0
REMARK 465 MSE B 1
REMARK 465 SER B 2
REMARK 465 SER B 3
REMARK 465 SER B 37
REMARK 465 GLY C -1
REMARK 465 PRO C 0
REMARK 465 MET C 1
REMARK 465 ALA C 2
REMARK 465 ASP C 3
REMARK 465 LEU C 4
REMARK 465 TRP C 5
REMARK 465 ASP C 6
REMARK 465 ASP C 7
REMARK 465 ASN C 8
REMARK 465 ASP C 9
REMARK 465 PHE C 108
REMARK 465 THR C 109
REMARK 465 GLY D -1
REMARK 465 PRO D 0
REMARK 465 MET D 1
REMARK 465 ALA D 2
REMARK 465 ASP D 3
REMARK 465 LEU D 4
REMARK 465 TRP D 5
REMARK 465 ASP D 6
REMARK 465 ASP D 7
REMARK 465 ASN D 8
REMARK 465 ASP D 9
REMARK 465 PHE D 108
REMARK 465 THR D 109
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 43 -41.12 -179.26
REMARK 500 ASN A 63 -134.85 51.57
REMARK 500 GLN B 5 74.91 68.53
REMARK 500 ASN B 23 68.98 -152.46
REMARK 500 ALA B 40 -49.73 55.77
REMARK 500 ASN B 63 -137.95 54.13
REMARK 500 GLU B 92 70.25 47.75
REMARK 500 HIS B 127 72.81 -119.90
REMARK 500 GLN C 104 54.90 37.43
REMARK 500 HIS D 106 79.72 56.88
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 201
DBREF 5OMB A 1 132 UNP P22336 RFA1_YEAST 1 132
DBREF 5OMB B 1 132 UNP P22336 RFA1_YEAST 1 132
DBREF 5OMB C 1 109 UNP Q6CUV9 LCD1_KLULA 1 109
DBREF 5OMB D 1 109 UNP Q6CUV9 LCD1_KLULA 1 109
SEQADV 5OMB GLY A -1 UNP P22336 EXPRESSION TAG
SEQADV 5OMB PRO A 0 UNP P22336 EXPRESSION TAG
SEQADV 5OMB GLY B -1 UNP P22336 EXPRESSION TAG
SEQADV 5OMB PRO B 0 UNP P22336 EXPRESSION TAG
SEQADV 5OMB GLY C -1 UNP Q6CUV9 EXPRESSION TAG
SEQADV 5OMB PRO C 0 UNP Q6CUV9 EXPRESSION TAG
SEQADV 5OMB GLY D -1 UNP Q6CUV9 EXPRESSION TAG
SEQADV 5OMB PRO D 0 UNP Q6CUV9 EXPRESSION TAG
SEQRES 1 A 134 GLY PRO MSE SER SER VAL GLN LEU SER ARG GLY ASP PHE
SEQRES 2 A 134 HIS SER ILE PHE THR ASN LYS GLN ARG TYR ASP ASN PRO
SEQRES 3 A 134 THR GLY GLY VAL TYR GLN VAL TYR ASN THR ARG LYS SER
SEQRES 4 A 134 ASP GLY ALA ASN SER ASN ARG LYS ASN LEU ILE MSE ILE
SEQRES 5 A 134 SER ASP GLY ILE TYR HIS MSE LYS ALA LEU LEU ARG ASN
SEQRES 6 A 134 GLN ALA ALA SER LYS PHE GLN SER MSE GLU LEU GLN ARG
SEQRES 7 A 134 GLY ASP ILE ILE ARG VAL ILE ILE ALA GLU PRO ALA ILE
SEQRES 8 A 134 VAL ARG GLU ARG LYS LYS TYR VAL LEU LEU VAL ASP ASP
SEQRES 9 A 134 PHE GLU LEU VAL GLN SER ARG ALA ASP MSE VAL ASN GLN
SEQRES 10 A 134 THR SER THR PHE LEU ASP ASN TYR PHE SER GLU HIS PRO
SEQRES 11 A 134 ASN GLU THR LEU
SEQRES 1 B 134 GLY PRO MSE SER SER VAL GLN LEU SER ARG GLY ASP PHE
SEQRES 2 B 134 HIS SER ILE PHE THR ASN LYS GLN ARG TYR ASP ASN PRO
SEQRES 3 B 134 THR GLY GLY VAL TYR GLN VAL TYR ASN THR ARG LYS SER
SEQRES 4 B 134 ASP GLY ALA ASN SER ASN ARG LYS ASN LEU ILE MSE ILE
SEQRES 5 B 134 SER ASP GLY ILE TYR HIS MSE LYS ALA LEU LEU ARG ASN
SEQRES 6 B 134 GLN ALA ALA SER LYS PHE GLN SER MSE GLU LEU GLN ARG
SEQRES 7 B 134 GLY ASP ILE ILE ARG VAL ILE ILE ALA GLU PRO ALA ILE
SEQRES 8 B 134 VAL ARG GLU ARG LYS LYS TYR VAL LEU LEU VAL ASP ASP
SEQRES 9 B 134 PHE GLU LEU VAL GLN SER ARG ALA ASP MSE VAL ASN GLN
SEQRES 10 B 134 THR SER THR PHE LEU ASP ASN TYR PHE SER GLU HIS PRO
SEQRES 11 B 134 ASN GLU THR LEU
SEQRES 1 C 111 GLY PRO MET ALA ASP LEU TRP ASP ASP ASN ASP ASP ASP
SEQRES 2 C 111 ASP ASP ILE LEU GLU LEU VAL ASN ARG PRO PRO MET SER
SEQRES 3 C 111 GLN MET ALA VAL PRO ILE LYS PRO PRO GLU SER GLN ALA
SEQRES 4 C 111 GLU GLN LEU MET LYS ALA LYS GLY GLU VAL GLY VAL LEU
SEQRES 5 C 111 ARG GLN LYS LEU SER MET LEU GLU LYS THR LEU ARG GLU
SEQRES 6 C 111 HIS ASP ASP ASN GLN LYS LYS LEU GLU SER SER LEU LYS
SEQRES 7 C 111 SER SER HIS GLU GLU GLU VAL THR LYS LEU LYS ILE GLU
SEQRES 8 C 111 LEU GLU ARG LEU GLU ASP GLU ARG LYS PHE MET LEU LEU
SEQRES 9 C 111 GLU GLN LYS HIS LEU PHE THR
SEQRES 1 D 111 GLY PRO MET ALA ASP LEU TRP ASP ASP ASN ASP ASP ASP
SEQRES 2 D 111 ASP ASP ILE LEU GLU LEU VAL ASN ARG PRO PRO MET SER
SEQRES 3 D 111 GLN MET ALA VAL PRO ILE LYS PRO PRO GLU SER GLN ALA
SEQRES 4 D 111 GLU GLN LEU MET LYS ALA LYS GLY GLU VAL GLY VAL LEU
SEQRES 5 D 111 ARG GLN LYS LEU SER MET LEU GLU LYS THR LEU ARG GLU
SEQRES 6 D 111 HIS ASP ASP ASN GLN LYS LYS LEU GLU SER SER LEU LYS
SEQRES 7 D 111 SER SER HIS GLU GLU GLU VAL THR LYS LEU LYS ILE GLU
SEQRES 8 D 111 LEU GLU ARG LEU GLU ASP GLU ARG LYS PHE MET LEU LEU
SEQRES 9 D 111 GLU GLN LYS HIS LEU PHE THR
MODRES 5OMB MSE A 49 MET MODIFIED RESIDUE
MODRES 5OMB MSE A 57 MET MODIFIED RESIDUE
MODRES 5OMB MSE A 72 MET MODIFIED RESIDUE
MODRES 5OMB MSE A 112 MET MODIFIED RESIDUE
MODRES 5OMB MSE B 49 MET MODIFIED RESIDUE
MODRES 5OMB MSE B 57 MET MODIFIED RESIDUE
MODRES 5OMB MSE B 72 MET MODIFIED RESIDUE
MODRES 5OMB MSE B 112 MET MODIFIED RESIDUE
HET MSE A 49 8
HET MSE A 57 8
HET MSE A 72 8
HET MSE A 112 8
HET MSE B 49 8
HET MSE B 57 8
HET MSE B 72 8
HET MSE B 112 8
HET CL A 201 1
HET CL B 201 1
HET EDO C 201 4
HET CL D 201 1
HETNAM MSE SELENOMETHIONINE
HETNAM CL CHLORIDE ION
HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 1 MSE 8(C5 H11 N O2 SE)
FORMUL 5 CL 3(CL 1-)
FORMUL 7 EDO C2 H6 O2
FORMUL 9 HOH *202(H2 O)
HELIX 1 AA1 GLY A 9 ASN A 17 1 9
HELIX 2 AA2 ASN A 17 ASN A 23 1 7
HELIX 3 AA3 ASN A 43 LYS A 45 5 3
HELIX 4 AA4 ARG A 62 MSE A 72 1 11
HELIX 5 AA5 LEU A 120 HIS A 127 1 8
HELIX 6 AA6 PRO A 128 THR A 131 5 4
HELIX 7 AA7 GLY B 9 ASN B 17 1 9
HELIX 8 AA8 ASN B 17 ASP B 22 1 6
HELIX 9 AA9 ASN B 43 LYS B 45 5 3
HELIX 10 AB1 ARG B 62 MSE B 72 1 11
HELIX 11 AB2 LEU B 120 HIS B 127 1 8
HELIX 12 AB3 PRO B 128 THR B 131 5 4
HELIX 13 AB4 ASP C 11 GLU C 16 1 6
HELIX 14 AB5 SER C 35 GLN C 104 1 70
HELIX 15 AB6 ASP D 11 GLU D 16 1 6
HELIX 16 AB7 SER D 35 LYS D 105 1 71
SHEET 1 AA1 7 THR A 118 PHE A 119 0
SHEET 2 AA1 7 TYR A 55 LEU A 61 1 N HIS A 56 O THR A 118
SHEET 3 AA1 7 LYS A 95 GLN A 107 1 O VAL A 100 N LEU A 60
SHEET 4 AA1 7 ILE A 79 VAL A 90 -1 N ILE A 79 O GLN A 107
SHEET 5 AA1 7 VAL A 28 ASN A 33 -1 N TYR A 29 O ILE A 80
SHEET 6 AA1 7 LEU A 47 SER A 51 -1 O MSE A 49 N ASN A 33
SHEET 7 AA1 7 TYR A 55 LEU A 61 -1 O MSE A 57 N ILE A 50
SHEET 1 AA2 7 THR B 118 PHE B 119 0
SHEET 2 AA2 7 TYR B 55 LEU B 61 1 N HIS B 56 O THR B 118
SHEET 3 AA2 7 LYS B 95 GLN B 107 1 O VAL B 100 N LEU B 60
SHEET 4 AA2 7 ILE B 79 VAL B 90 -1 N ILE B 79 O GLN B 107
SHEET 5 AA2 7 VAL B 28 ASN B 33 -1 N TYR B 29 O ILE B 80
SHEET 6 AA2 7 LEU B 47 SER B 51 -1 O MSE B 49 N ASN B 33
SHEET 7 AA2 7 TYR B 55 LEU B 61 -1 O ALA B 59 N ILE B 48
LINK C ILE A 48 N MSE A 49 1555 1555 1.33
LINK C MSE A 49 N ILE A 50 1555 1555 1.33
LINK C HIS A 56 N MSE A 57 1555 1555 1.34
LINK C MSE A 57 N LYS A 58 1555 1555 1.33
LINK C SER A 71 N MSE A 72 1555 1555 1.34
LINK C MSE A 72 N GLU A 73 1555 1555 1.35
LINK C ASP A 111 N MSE A 112 1555 1555 1.35
LINK C MSE A 112 N VAL A 113 1555 1555 1.35
LINK C ILE B 48 N MSE B 49 1555 1555 1.35
LINK C MSE B 49 N ILE B 50 1555 1555 1.33
LINK C HIS B 56 N MSE B 57 1555 1555 1.34
LINK C MSE B 57 N LYS B 58 1555 1555 1.35
LINK C SER B 71 N MSE B 72 1555 1555 1.35
LINK C MSE B 72 N GLU B 73 1555 1555 1.35
LINK C ASP B 111 N MSE B 112 1555 1555 1.35
LINK C MSE B 112 N VAL B 113 1555 1555 1.34
SITE 1 AC1 1 LEU A 47
SITE 1 AC2 8 ARG B 62 ASN B 63 HOH B 302 VAL C 18
SITE 2 AC2 8 ASN C 19 PRO C 29 ILE C 30 HOH C 337
CRYST1 34.050 94.940 170.470 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.029369 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010533 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005866 0.00000