HEADER PROTEIN BINDING 28-JUL-17 5OMC
TITLE CRYSTAL STRUCTURE OF K. LACTIS DDC2 N-TERMINUS IN COMPLEX WITH S.
TITLE 2 CEREVISIAE RFA1 (K45E MUTANT) N-OB DOMAIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: REPLICATION FACTOR A PROTEIN 1;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 1-132;
COMPND 5 SYNONYM: RF-A PROTEIN 1,DNA-BINDING PROTEIN BUF2,REPLICATION PROTEIN
COMPND 6 A 69 KDA DNA-BINDING SUBUNIT,SINGLE-STRANDED DNA-BINDING PROTEIN;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES;
COMPND 9 MOL_ID: 2;
COMPND 10 MOLECULE: DNA DAMAGE CHECKPOINT PROTEIN LCD1;
COMPND 11 CHAIN: C, D;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 /
SOURCE 3 S288C);
SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 5 ORGANISM_TAXID: 559292;
SOURCE 6 GENE: RFA1, BUF2, RPA1, YAR007C, FUN3;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINF;
SOURCE 11 MOL_ID: 2;
SOURCE 12 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS;
SOURCE 13 ORGANISM_COMMON: YEAST;
SOURCE 14 ORGANISM_TAXID: 28985;
SOURCE 15 GENE: LCD1, KLLA0C01892G;
SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 19 EXPRESSION_SYSTEM_PLASMID: POPINF
KEYWDS OLIGONUCLEOTIDE-BINDING FOLD, COILED-COIL DOMAIN, COMPLEX, MUTANT,
KEYWDS 2 PROTEIN BINDING
EXPDTA X-RAY DIFFRACTION
AUTHOR I.DESHPANDE,A.SEEBER,K.SHIMADA,J.J.KEUSCH,H.GUT,S.M.GASSER
REVDAT 3 17-JAN-24 5OMC 1 REMARK
REVDAT 2 01-NOV-17 5OMC 1 JRNL
REVDAT 1 25-OCT-17 5OMC 0
JRNL AUTH I.DESHPANDE,A.SEEBER,K.SHIMADA,J.J.KEUSCH,H.GUT,S.M.GASSER
JRNL TITL STRUCTURAL BASIS OF MEC1-DDC2-RPA ASSEMBLY AND ACTIVATION ON
JRNL TITL 2 SINGLE-STRANDED DNA AT SITES OF DAMAGE.
JRNL REF MOL. CELL V. 68 431 2017
JRNL REFN ISSN 1097-4164
JRNL PMID 29033322
JRNL DOI 10.1016/J.MOLCEL.2017.09.019
REMARK 2
REMARK 2 RESOLUTION. 2.38 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.5
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.29
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8
REMARK 3 NUMBER OF REFLECTIONS : 21407
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.204
REMARK 3 R VALUE (WORKING SET) : 0.201
REMARK 3 FREE R VALUE : 0.261
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1071
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 11
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.50
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.75
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2358
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2292
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2240
REMARK 3 BIN R VALUE (WORKING SET) : 0.2258
REMARK 3 BIN FREE R VALUE : 0.2978
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 118
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3558
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 3
REMARK 3 SOLVENT ATOMS : 92
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 56.98
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.13
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.55810
REMARK 3 B22 (A**2) : -1.30670
REMARK 3 B33 (A**2) : 2.86470
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.345
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.380
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.265
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.362
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.264
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3630 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4873 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1383 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 124 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 502 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3630 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 463 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : 2 ; 1.000 ; HARMONIC
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 4114 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.13
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.83
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.64
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 6.4233 117.0220 194.9920
REMARK 3 T TENSOR
REMARK 3 T11: -0.0416 T22: -0.1442
REMARK 3 T33: -0.0598 T12: 0.0387
REMARK 3 T13: -0.0040 T23: 0.0255
REMARK 3 L TENSOR
REMARK 3 L11: 1.0994 L22: 5.2177
REMARK 3 L33: 2.7214 L12: -0.8348
REMARK 3 L13: 0.5760 L23: -0.5425
REMARK 3 S TENSOR
REMARK 3 S11: -0.0021 S12: 0.1372 S13: 0.0726
REMARK 3 S21: -0.5352 S22: 0.0624 S23: 0.1151
REMARK 3 S31: -0.1321 S32: -0.0938 S33: -0.0603
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 64.3379 73.9240 195.0000
REMARK 3 T TENSOR
REMARK 3 T11: -0.0610 T22: -0.2557
REMARK 3 T33: -0.0331 T12: -0.0263
REMARK 3 T13: 0.0721 T23: -0.0702
REMARK 3 L TENSOR
REMARK 3 L11: 4.2454 L22: 4.3127
REMARK 3 L33: 4.0825 L12: -2.4499
REMARK 3 L13: -1.7318 L23: 1.4088
REMARK 3 S TENSOR
REMARK 3 S11: -0.0815 S12: 0.4990 S13: -0.4564
REMARK 3 S21: -0.4601 S22: -0.2152 S23: -0.0451
REMARK 3 S31: 0.3268 S32: 0.0695 S33: 0.2967
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 35.5768 89.5679 243.0000
REMARK 3 T TENSOR
REMARK 3 T11: 0.1073 T22: -0.0915
REMARK 3 T33: 0.0175 T12: -0.0219
REMARK 3 T13: 0.0364 T23: 0.0004
REMARK 3 L TENSOR
REMARK 3 L11: 0.0153 L22: 0.0000
REMARK 3 L33: 0.0041 L12: -0.0981
REMARK 3 L13: -0.0149 L23: 0.3192
REMARK 3 S TENSOR
REMARK 3 S11: -0.1022 S12: 0.0147 S13: -0.1060
REMARK 3 S21: 0.0093 S22: -0.1125 S23: 0.0693
REMARK 3 S31: 0.1235 S32: -0.1475 S33: 0.2147
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { D|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 32.8328 100.1190 242.7060
REMARK 3 T TENSOR
REMARK 3 T11: 0.0637 T22: -0.0895
REMARK 3 T33: 0.0241 T12: -0.0142
REMARK 3 T13: -0.0236 T23: -0.0158
REMARK 3 L TENSOR
REMARK 3 L11: 0.0000 L22: 0.0000
REMARK 3 L33: 1.7328 L12: -0.0287
REMARK 3 L13: -0.0676 L23: -0.5710
REMARK 3 S TENSOR
REMARK 3 S11: -0.0701 S12: -0.0251 S13: 0.0112
REMARK 3 S21: 0.1048 S22: -0.0660 S23: -0.0416
REMARK 3 S31: -0.2104 S32: 0.2890 S33: 0.1361
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5OMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-17.
REMARK 100 THE DEPOSITION ID IS D_1200006037.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 03-DEC-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X10SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21408
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1
REMARK 200 DATA REDUNDANCY : 3.770
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.13900
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.8700
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45
REMARK 200 COMPLETENESS FOR SHELL (%) : 69.9
REMARK 200 DATA REDUNDANCY IN SHELL : 2.92
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.91900
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.990
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5OMB
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.97
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1
REMARK 280 M BIS-TRIS, 25% PEG 3,350, PH 6.5, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.21000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.42000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.29500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.42000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.21000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.29500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 7320 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 27290 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -1
REMARK 465 PRO A 0
REMARK 465 MET A 1
REMARK 465 SER A 2
REMARK 465 SER A 3
REMARK 465 ARG A 35
REMARK 465 LYS A 36
REMARK 465 SER A 37
REMARK 465 ASP A 38
REMARK 465 GLY A 39
REMARK 465 ALA A 40
REMARK 465 ASN A 41
REMARK 465 SER A 42
REMARK 465 GLY B -1
REMARK 465 PRO B 0
REMARK 465 MET B 1
REMARK 465 SER B 2
REMARK 465 SER B 3
REMARK 465 VAL B 4
REMARK 465 LYS B 36
REMARK 465 SER B 37
REMARK 465 ASP B 38
REMARK 465 GLY B 39
REMARK 465 ALA B 40
REMARK 465 ASN B 41
REMARK 465 SER B 42
REMARK 465 LEU B 132
REMARK 465 GLY C -1
REMARK 465 PRO C 0
REMARK 465 MET C 1
REMARK 465 ALA C 2
REMARK 465 ASP C 3
REMARK 465 LEU C 4
REMARK 465 TRP C 5
REMARK 465 ASP C 6
REMARK 465 ASP C 7
REMARK 465 ASN C 8
REMARK 465 ASP C 9
REMARK 465 LEU C 107
REMARK 465 PHE C 108
REMARK 465 THR C 109
REMARK 465 GLY D -1
REMARK 465 PRO D 0
REMARK 465 MET D 1
REMARK 465 ALA D 2
REMARK 465 ASP D 3
REMARK 465 LEU D 4
REMARK 465 TRP D 5
REMARK 465 ASP D 6
REMARK 465 ASP D 7
REMARK 465 ASN D 8
REMARK 465 ASP D 9
REMARK 465 LEU D 107
REMARK 465 PHE D 108
REMARK 465 THR D 109
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 63 -130.42 47.07
REMARK 500 ASN B 63 -131.73 47.38
REMARK 500 VAL B 90 -89.29 -105.84
REMARK 500 ARG B 93 -4.13 64.64
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201
DBREF 5OMC A 1 132 UNP P22336 RFA1_YEAST 1 132
DBREF 5OMC B 1 132 UNP P22336 RFA1_YEAST 1 132
DBREF 5OMC C 1 109 UNP Q6CUV9 LCD1_KLULA 1 109
DBREF 5OMC D 1 109 UNP Q6CUV9 LCD1_KLULA 1 109
SEQADV 5OMC GLY A -1 UNP P22336 EXPRESSION TAG
SEQADV 5OMC PRO A 0 UNP P22336 EXPRESSION TAG
SEQADV 5OMC GLU A 45 UNP P22336 LYS 45 ENGINEERED MUTATION
SEQADV 5OMC GLY B -1 UNP P22336 EXPRESSION TAG
SEQADV 5OMC PRO B 0 UNP P22336 EXPRESSION TAG
SEQADV 5OMC GLU B 45 UNP P22336 LYS 45 ENGINEERED MUTATION
SEQADV 5OMC GLY C -1 UNP Q6CUV9 EXPRESSION TAG
SEQADV 5OMC PRO C 0 UNP Q6CUV9 EXPRESSION TAG
SEQADV 5OMC GLY D -1 UNP Q6CUV9 EXPRESSION TAG
SEQADV 5OMC PRO D 0 UNP Q6CUV9 EXPRESSION TAG
SEQRES 1 A 134 GLY PRO MET SER SER VAL GLN LEU SER ARG GLY ASP PHE
SEQRES 2 A 134 HIS SER ILE PHE THR ASN LYS GLN ARG TYR ASP ASN PRO
SEQRES 3 A 134 THR GLY GLY VAL TYR GLN VAL TYR ASN THR ARG LYS SER
SEQRES 4 A 134 ASP GLY ALA ASN SER ASN ARG GLU ASN LEU ILE MET ILE
SEQRES 5 A 134 SER ASP GLY ILE TYR HIS MET LYS ALA LEU LEU ARG ASN
SEQRES 6 A 134 GLN ALA ALA SER LYS PHE GLN SER MET GLU LEU GLN ARG
SEQRES 7 A 134 GLY ASP ILE ILE ARG VAL ILE ILE ALA GLU PRO ALA ILE
SEQRES 8 A 134 VAL ARG GLU ARG LYS LYS TYR VAL LEU LEU VAL ASP ASP
SEQRES 9 A 134 PHE GLU LEU VAL GLN SER ARG ALA ASP MET VAL ASN GLN
SEQRES 10 A 134 THR SER THR PHE LEU ASP ASN TYR PHE SER GLU HIS PRO
SEQRES 11 A 134 ASN GLU THR LEU
SEQRES 1 B 134 GLY PRO MET SER SER VAL GLN LEU SER ARG GLY ASP PHE
SEQRES 2 B 134 HIS SER ILE PHE THR ASN LYS GLN ARG TYR ASP ASN PRO
SEQRES 3 B 134 THR GLY GLY VAL TYR GLN VAL TYR ASN THR ARG LYS SER
SEQRES 4 B 134 ASP GLY ALA ASN SER ASN ARG GLU ASN LEU ILE MET ILE
SEQRES 5 B 134 SER ASP GLY ILE TYR HIS MET LYS ALA LEU LEU ARG ASN
SEQRES 6 B 134 GLN ALA ALA SER LYS PHE GLN SER MET GLU LEU GLN ARG
SEQRES 7 B 134 GLY ASP ILE ILE ARG VAL ILE ILE ALA GLU PRO ALA ILE
SEQRES 8 B 134 VAL ARG GLU ARG LYS LYS TYR VAL LEU LEU VAL ASP ASP
SEQRES 9 B 134 PHE GLU LEU VAL GLN SER ARG ALA ASP MET VAL ASN GLN
SEQRES 10 B 134 THR SER THR PHE LEU ASP ASN TYR PHE SER GLU HIS PRO
SEQRES 11 B 134 ASN GLU THR LEU
SEQRES 1 C 111 GLY PRO MET ALA ASP LEU TRP ASP ASP ASN ASP ASP ASP
SEQRES 2 C 111 ASP ASP ILE LEU GLU LEU VAL ASN ARG PRO PRO MET SER
SEQRES 3 C 111 GLN MET ALA VAL PRO ILE LYS PRO PRO GLU SER GLN ALA
SEQRES 4 C 111 GLU GLN LEU MET LYS ALA LYS GLY GLU VAL GLY VAL LEU
SEQRES 5 C 111 ARG GLN LYS LEU SER MET LEU GLU LYS THR LEU ARG GLU
SEQRES 6 C 111 HIS ASP ASP ASN GLN LYS LYS LEU GLU SER SER LEU LYS
SEQRES 7 C 111 SER SER HIS GLU GLU GLU VAL THR LYS LEU LYS ILE GLU
SEQRES 8 C 111 LEU GLU ARG LEU GLU ASP GLU ARG LYS PHE MET LEU LEU
SEQRES 9 C 111 GLU GLN LYS HIS LEU PHE THR
SEQRES 1 D 111 GLY PRO MET ALA ASP LEU TRP ASP ASP ASN ASP ASP ASP
SEQRES 2 D 111 ASP ASP ILE LEU GLU LEU VAL ASN ARG PRO PRO MET SER
SEQRES 3 D 111 GLN MET ALA VAL PRO ILE LYS PRO PRO GLU SER GLN ALA
SEQRES 4 D 111 GLU GLN LEU MET LYS ALA LYS GLY GLU VAL GLY VAL LEU
SEQRES 5 D 111 ARG GLN LYS LEU SER MET LEU GLU LYS THR LEU ARG GLU
SEQRES 6 D 111 HIS ASP ASP ASN GLN LYS LYS LEU GLU SER SER LEU LYS
SEQRES 7 D 111 SER SER HIS GLU GLU GLU VAL THR LYS LEU LYS ILE GLU
SEQRES 8 D 111 LEU GLU ARG LEU GLU ASP GLU ARG LYS PHE MET LEU LEU
SEQRES 9 D 111 GLU GLN LYS HIS LEU PHE THR
HET CL B 201 1
HET CL D 201 1
HET CL D 202 1
HETNAM CL CHLORIDE ION
FORMUL 5 CL 3(CL 1-)
FORMUL 8 HOH *92(H2 O)
HELIX 1 AA1 GLY A 9 ASN A 17 1 9
HELIX 2 AA2 ASN A 17 ASN A 23 1 7
HELIX 3 AA3 ARG A 62 MET A 72 1 11
HELIX 4 AA4 LEU A 120 HIS A 127 1 8
HELIX 5 AA5 GLY B 9 ASN B 17 1 9
HELIX 6 AA6 ASN B 17 ASN B 23 1 7
HELIX 7 AA7 ASN B 43 GLU B 45 5 3
HELIX 8 AA8 ARG B 62 GLU B 73 1 12
HELIX 9 AA9 ARG B 91 LYS B 94 5 4
HELIX 10 AB1 LEU B 120 HIS B 127 1 8
HELIX 11 AB2 ASP C 11 GLU C 16 1 6
HELIX 12 AB3 SER C 35 GLU C 103 1 69
HELIX 13 AB4 ASP D 11 GLU D 16 1 6
HELIX 14 AB5 SER D 35 HIS D 106 1 72
SHEET 1 AA1 7 THR A 118 PHE A 119 0
SHEET 2 AA1 7 TYR A 55 LEU A 61 1 N HIS A 56 O THR A 118
SHEET 3 AA1 7 LYS A 95 GLN A 107 1 O VAL A 100 N LEU A 60
SHEET 4 AA1 7 ILE A 79 VAL A 90 -1 N ILE A 79 O GLN A 107
SHEET 5 AA1 7 VAL A 28 ASN A 33 -1 N TYR A 29 O ILE A 80
SHEET 6 AA1 7 LEU A 47 SER A 51 -1 O MET A 49 N TYR A 32
SHEET 7 AA1 7 TYR A 55 LEU A 61 -1 O MET A 57 N ILE A 50
SHEET 1 AA2 7 THR B 118 PHE B 119 0
SHEET 2 AA2 7 TYR B 55 LEU B 61 1 N HIS B 56 O THR B 118
SHEET 3 AA2 7 TYR B 96 GLN B 107 1 O VAL B 100 N LEU B 60
SHEET 4 AA2 7 ILE B 79 ILE B 89 -1 N ILE B 79 O GLN B 107
SHEET 5 AA2 7 VAL B 28 ASN B 33 -1 N TYR B 29 O ILE B 80
SHEET 6 AA2 7 LEU B 47 SER B 51 -1 O MET B 49 N TYR B 32
SHEET 7 AA2 7 TYR B 55 LEU B 61 -1 O MET B 57 N ILE B 50
SITE 1 AC1 2 ASN B 63 VAL C 18
CRYST1 34.420 94.590 170.840 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.029053 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010572 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005853 0.00000