HEADER OXIDOREDUCTASE 01-AUG-17 5OMU TITLE CRYSTAL STRUCTURE OF AMYCOLATOPSIS CYTOCHROME P450 GCOA IN COMPLEX TITLE 2 WITH SYRINGOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS SP. ATCC 39116; SOURCE 3 ORGANISM_TAXID: 385957; SOURCE 4 GENE: AMETH_3834; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME, P450, GUAIACOL, LIGNIN, CYP255A, AMYCOLATOPSIS, HEME, KEYWDS 2 HAEM, OXIDOREDUCTASE, SYRINGOL EXPDTA X-RAY DIFFRACTION AUTHOR S.J.B.MALLINSON,C.W.JOHNSON,E.L.NEIDLE,G.T.BECKHAM,J.E.MCGEEHAN REVDAT 3 30-MAR-22 5OMU 1 REMARK REVDAT 2 11-JUL-18 5OMU 1 JRNL REVDAT 1 04-JUL-18 5OMU 0 JRNL AUTH S.J.B.MALLINSON,M.M.MACHOVINA,R.L.SILVEIRA,M.GARCIA-BORRAS, JRNL AUTH 2 N.GALLUP,C.W.JOHNSON,M.D.ALLEN,M.S.SKAF,M.F.CROWLEY, JRNL AUTH 3 E.L.NEIDLE,K.N.HOUK,G.T.BECKHAM,J.L.DUBOIS,J.E.MCGEEHAN JRNL TITL A PROMISCUOUS CYTOCHROME P450 AROMATIC O-DEMETHYLASE FOR JRNL TITL 2 LIGNIN BIOCONVERSION. JRNL REF NAT COMMUN V. 9 2487 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29950589 JRNL DOI 10.1038/S41467-018-04878-2 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5741 - 5.0106 1.00 2853 135 0.1500 0.1606 REMARK 3 2 5.0106 - 3.9784 1.00 2725 130 0.1123 0.1339 REMARK 3 3 3.9784 - 3.4759 1.00 2660 141 0.1249 0.1530 REMARK 3 4 3.4759 - 3.1582 1.00 2634 164 0.1480 0.1836 REMARK 3 5 3.1582 - 2.9319 1.00 2589 177 0.1801 0.2065 REMARK 3 6 2.9319 - 2.7591 1.00 2604 152 0.1764 0.2009 REMARK 3 7 2.7591 - 2.6210 1.00 2601 157 0.1746 0.1987 REMARK 3 8 2.6210 - 2.5069 1.00 2624 115 0.1659 0.2514 REMARK 3 9 2.5069 - 2.4104 1.00 2591 149 0.1638 0.1920 REMARK 3 10 2.4104 - 2.3273 1.00 2621 132 0.1518 0.2006 REMARK 3 11 2.3273 - 2.2545 1.00 2610 104 0.1532 0.1662 REMARK 3 12 2.2545 - 2.1901 1.00 2605 128 0.1602 0.2154 REMARK 3 13 2.1901 - 2.1324 1.00 2571 152 0.1547 0.2108 REMARK 3 14 2.1324 - 2.0804 1.00 2597 137 0.1685 0.1969 REMARK 3 15 2.0804 - 2.0331 1.00 2569 117 0.1761 0.2111 REMARK 3 16 2.0331 - 1.9898 1.00 2566 153 0.1878 0.2013 REMARK 3 17 1.9898 - 1.9500 1.00 2575 144 0.2227 0.2827 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3310 REMARK 3 ANGLE : 2.230 4536 REMARK 3 CHIRALITY : 0.056 476 REMARK 3 PLANARITY : 0.007 599 REMARK 3 DIHEDRAL : 14.892 1943 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 47.5827 81.4678 41.6036 REMARK 3 T TENSOR REMARK 3 T11: 0.3772 T22: 0.2910 REMARK 3 T33: 0.3497 T12: 0.0678 REMARK 3 T13: 0.0123 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.6290 L22: 0.8249 REMARK 3 L33: 1.2253 L12: 0.2886 REMARK 3 L13: -0.5256 L23: 0.1759 REMARK 3 S TENSOR REMARK 3 S11: -0.1809 S12: -0.1113 S13: 0.0383 REMARK 3 S21: 0.1312 S22: 0.1101 S23: -0.0896 REMARK 3 S31: 0.2144 S32: 0.1300 S33: 0.0592 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M SODIUM MALONATE, 0.2M SYRINGOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.61500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.68000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.92250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.68000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.30750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.68000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.68000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.92250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.68000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.68000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.30750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.61500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 621 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1037 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 VAL A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD GLU A 179 O HOH A 601 1.45 REMARK 500 OE1 GLU A 179 O HOH A 601 1.69 REMARK 500 OE2 GLU A 179 O HOH A 601 1.69 REMARK 500 O HOH A 658 O HOH A 889 2.03 REMARK 500 O HOH A 889 O HOH A 947 2.10 REMARK 500 O HOH A 936 O HOH A 967 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 5 O HOH A 1009 3654 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 95.87 -162.28 REMARK 500 ALA A 35 81.43 -159.64 REMARK 500 PHE A 123 -7.03 -141.37 REMARK 500 TYR A 135 -58.80 -140.96 REMARK 500 LEU A 244 -87.48 -98.12 REMARK 500 SER A 294 42.40 -163.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1068 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1069 DISTANCE = 6.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 356 SG REMARK 620 2 HEM A 501 NA 103.2 REMARK 620 3 HEM A 501 NB 98.6 85.2 REMARK 620 4 HEM A 501 NC 97.3 159.5 90.8 REMARK 620 5 HEM A 501 ND 103.1 85.3 157.7 91.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3DM A 502 DBREF1 5OMU A 1 407 UNP A0A076MY51_AMYME DBREF2 5OMU A A0A076MY51 1 407 SEQADV 5OMU GLY A -1 UNP A0A076MY5 EXPRESSION TAG SEQADV 5OMU PRO A 0 UNP A0A076MY5 EXPRESSION TAG SEQADV 5OMU HIS A 210 UNP A0A076MY5 GLN 210 CONFLICT SEQRES 1 A 409 GLY PRO MET THR THR THR GLU ARG PRO ASP LEU ALA TRP SEQRES 2 A 409 LEU ASP GLU VAL THR MET THR GLN LEU GLU ARG ASN PRO SEQRES 3 A 409 TYR GLU VAL TYR GLU ARG LEU ARG ALA GLU ALA PRO LEU SEQRES 4 A 409 ALA PHE VAL PRO VAL LEU GLY SER TYR VAL ALA SER THR SEQRES 5 A 409 ALA GLU VAL CYS ARG GLU VAL ALA THR SER PRO ASP PHE SEQRES 6 A 409 GLU ALA VAL ILE THR PRO ALA GLY GLY ARG THR PHE GLY SEQRES 7 A 409 HIS PRO ALA ILE ILE GLY VAL ASN GLY ASP ILE HIS ALA SEQRES 8 A 409 ASP LEU ARG SER MET VAL GLU PRO ALA LEU GLN PRO ALA SEQRES 9 A 409 GLU VAL ASP ARG TRP ILE ASP ASP LEU VAL ARG PRO ILE SEQRES 10 A 409 ALA ARG ARG TYR LEU GLU ARG PHE GLU ASN ASP GLY HIS SEQRES 11 A 409 ALA GLU LEU VAL ALA GLN TYR CYS GLU PRO VAL SER VAL SEQRES 12 A 409 ARG SER LEU GLY ASP LEU LEU GLY LEU GLN GLU VAL ASP SEQRES 13 A 409 SER ASP LYS LEU ARG GLU TRP PHE ALA LYS LEU ASN ARG SEQRES 14 A 409 SER PHE THR ASN ALA ALA VAL ASP GLU ASN GLY GLU PHE SEQRES 15 A 409 ALA ASN PRO GLU GLY PHE ALA GLU GLY ASP GLN ALA LYS SEQRES 16 A 409 ALA GLU ILE ARG ALA VAL VAL ASP PRO LEU ILE ASP LYS SEQRES 17 A 409 TRP ILE GLU HIS PRO ASP ASP SER ALA ILE SER HIS TRP SEQRES 18 A 409 LEU HIS ASP GLY MET PRO PRO GLY GLN THR ARG ASP ARG SEQRES 19 A 409 GLU TYR ILE TYR PRO THR ILE TYR VAL TYR LEU LEU GLY SEQRES 20 A 409 ALA MET GLN GLU PRO GLY HIS GLY MET ALA SER THR LEU SEQRES 21 A 409 VAL GLY LEU PHE SER ARG PRO GLU GLN LEU GLU GLU VAL SEQRES 22 A 409 VAL ASP ASP PRO THR LEU ILE PRO ARG ALA ILE ALA GLU SEQRES 23 A 409 GLY LEU ARG TRP THR SER PRO ILE TRP SER ALA THR ALA SEQRES 24 A 409 ARG ILE SER THR LYS PRO VAL THR ILE ALA GLY VAL ASP SEQRES 25 A 409 LEU PRO ALA GLY THR PRO VAL MET LEU SER TYR GLY SER SEQRES 26 A 409 ALA ASN HIS ASP THR GLY LYS TYR GLU ALA PRO SER GLN SEQRES 27 A 409 TYR ASP LEU HIS ARG PRO PRO LEU PRO HIS LEU ALA PHE SEQRES 28 A 409 GLY ALA GLY ASN HIS ALA CYS ALA GLY ILE TYR PHE ALA SEQRES 29 A 409 ASN HIS VAL MET ARG ILE ALA LEU GLU GLU LEU PHE GLU SEQRES 30 A 409 ALA ILE PRO ASN LEU GLU ARG ASP THR ARG GLU GLY VAL SEQRES 31 A 409 GLU PHE TRP GLY TRP GLY PHE ARG GLY PRO THR SER LEU SEQRES 32 A 409 HIS VAL THR TRP GLU VAL HET HEM A 501 43 HET 3DM A 502 11 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM 3DM 2,6-DIMETHOXYPHENOL HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 3DM C8 H10 O3 FORMUL 4 HOH *469(H2 O) HELIX 1 AA1 ARG A 6 VAL A 15 5 10 HELIX 2 AA2 THR A 16 ASN A 23 1 8 HELIX 3 AA3 PRO A 24 ALA A 35 1 12 HELIX 4 AA4 THR A 50 SER A 60 1 11 HELIX 5 AA5 THR A 68 GLY A 76 1 9 HELIX 6 AA6 ALA A 79 VAL A 83 5 5 HELIX 7 AA7 ASN A 84 GLU A 96 1 13 HELIX 8 AA8 PRO A 97 LEU A 99 5 3 HELIX 9 AA9 GLN A 100 ARG A 122 1 23 HELIX 10 AB1 LEU A 131 TYR A 135 1 5 HELIX 11 AB2 TYR A 135 GLY A 149 1 15 HELIX 12 AB3 ASP A 154 THR A 170 1 17 HELIX 13 AB4 ASN A 182 GLY A 185 5 4 HELIX 14 AB5 PHE A 186 HIS A 210 1 25 HELIX 15 AB6 SER A 214 ASP A 222 1 9 HELIX 16 AB7 ASP A 231 ARG A 264 1 34 HELIX 17 AB8 ARG A 264 ASP A 274 1 11 HELIX 18 AB9 LEU A 277 THR A 289 1 13 HELIX 19 AC1 SER A 320 ASN A 325 1 6 HELIX 20 AC2 ALA A 351 ALA A 355 5 5 HELIX 21 AC3 GLY A 358 ILE A 377 1 20 SHEET 1 AA1 5 LEU A 37 VAL A 40 0 SHEET 2 AA1 5 SER A 45 ALA A 48 -1 O SER A 45 N VAL A 40 SHEET 3 AA1 5 PRO A 316 LEU A 319 1 O MET A 318 N ALA A 48 SHEET 4 AA1 5 ALA A 297 SER A 300 -1 N ARG A 298 O VAL A 317 SHEET 5 AA1 5 PHE A 63 VAL A 66 -1 N GLU A 64 O ILE A 299 SHEET 1 AA2 3 HIS A 128 GLU A 130 0 SHEET 2 AA2 3 HIS A 402 THR A 404 -1 O VAL A 403 N ALA A 129 SHEET 3 AA2 3 GLU A 381 ARG A 382 -1 N GLU A 381 O THR A 404 SHEET 1 AA3 2 VAL A 304 ILE A 306 0 SHEET 2 AA3 2 VAL A 309 LEU A 311 -1 O LEU A 311 N VAL A 304 SHEET 1 AA4 2 PHE A 390 TRP A 391 0 SHEET 2 AA4 2 GLY A 397 PRO A 398 -1 O GLY A 397 N TRP A 391 LINK SG CYS A 356 FE HEM A 501 1555 1555 2.43 CISPEP 1 HIS A 77 PRO A 78 0 2.23 SITE 1 AC1 24 ILE A 80 ILE A 81 HIS A 88 ARG A 92 SITE 2 AC1 24 LEU A 99 TYR A 242 ALA A 246 GLU A 249 SITE 3 AC1 24 PRO A 250 ILE A 292 THR A 296 ARG A 298 SITE 4 AC1 24 TYR A 321 ALA A 348 PHE A 349 GLY A 350 SITE 5 AC1 24 ALA A 351 HIS A 354 ALA A 355 CYS A 356 SITE 6 AC1 24 ALA A 362 MET A 366 3DM A 502 HOH A 653 SITE 1 AC2 9 PHE A 75 PHE A 169 VAL A 241 LEU A 244 SITE 2 AC2 9 GLY A 245 ALA A 246 ILE A 292 PHE A 395 SITE 3 AC2 9 HEM A 501 CRYST1 105.360 105.360 113.230 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009491 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008832 0.00000