HEADER HYDROLASE 04-AUG-17 5ONZ TITLE CRYSTAL STRUCTURE OF MYCOLICIBACTERIUM HASSIACUM GLUCOSYLGLYCERATE TITLE 2 HYDROLASE (MHGGH) D182A VARIANT IN COMPLEX WITH GLUCOSYLGLYCOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM HASSIACUM (STRAIN DSM 44199 / CIP SOURCE 3 105218 / JCM 12690 / 3849); SOURCE 4 ORGANISM_TAXID: 1122247; SOURCE 5 GENE: C731_0006; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYCOBACTERIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.B.CEREIJA,S.MACEDO-RIBEIRO,P.J.B.PEREIRA REVDAT 5 17-JAN-24 5ONZ 1 HETSYN REVDAT 4 29-JUL-20 5ONZ 1 COMPND REMARK HETNAM SITE REVDAT 4 2 1 ATOM REVDAT 3 31-JUL-19 5ONZ 1 JRNL REVDAT 2 15-MAY-19 5ONZ 1 TITLE JRNL REVDAT 1 29-AUG-18 5ONZ 0 JRNL AUTH T.B.CEREIJA,S.ALARICO,E.C.LOURENCO,J.A.MANSO,M.R.VENTURA, JRNL AUTH 2 N.EMPADINHAS,S.MACEDO-RIBEIRO,P.J.B.PEREIRA JRNL TITL THE STRUCTURAL CHARACTERIZATION OF A GLUCOSYLGLYCERATE JRNL TITL 2 HYDROLASE PROVIDES INSIGHTS INTO THE MOLECULAR MECHANISM OF JRNL TITL 3 MYCOBACTERIAL RECOVERY FROM NITROGEN STARVATION. JRNL REF IUCRJ V. 6 572 2019 JRNL REFN ESSN 2052-2525 JRNL PMID 31316802 JRNL DOI 10.1107/S2052252519005372 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 91157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6832 - 5.9948 0.99 3126 155 0.1663 0.1796 REMARK 3 2 5.9948 - 4.7595 1.00 2969 163 0.1485 0.1727 REMARK 3 3 4.7595 - 4.1583 1.00 2940 175 0.1134 0.1475 REMARK 3 4 4.1583 - 3.7782 1.00 2916 173 0.1146 0.1541 REMARK 3 5 3.7782 - 3.5075 1.00 2917 155 0.1198 0.1496 REMARK 3 6 3.5075 - 3.3008 1.00 2906 136 0.1331 0.1694 REMARK 3 7 3.3008 - 3.1355 1.00 2934 144 0.1357 0.1859 REMARK 3 8 3.1355 - 2.9990 1.00 2900 140 0.1328 0.1891 REMARK 3 9 2.9990 - 2.8836 1.00 2887 169 0.1365 0.1527 REMARK 3 10 2.8836 - 2.7841 1.00 2891 136 0.1398 0.1768 REMARK 3 11 2.7841 - 2.6970 1.00 2893 154 0.1392 0.1666 REMARK 3 12 2.6970 - 2.6200 1.00 2873 156 0.1420 0.1850 REMARK 3 13 2.6200 - 2.5510 1.00 2891 141 0.1517 0.1980 REMARK 3 14 2.5510 - 2.4888 0.99 2873 157 0.1524 0.1818 REMARK 3 15 2.4888 - 2.4322 1.00 2871 163 0.1506 0.2148 REMARK 3 16 2.4322 - 2.3804 1.00 2844 160 0.1537 0.2063 REMARK 3 17 2.3804 - 2.3328 1.00 2868 143 0.1552 0.1784 REMARK 3 18 2.3328 - 2.2888 1.00 2906 134 0.1575 0.2278 REMARK 3 19 2.2888 - 2.2479 1.00 2895 131 0.1640 0.2219 REMARK 3 20 2.2479 - 2.2098 1.00 2835 156 0.1597 0.1949 REMARK 3 21 2.2098 - 2.1742 1.00 2875 159 0.1673 0.2138 REMARK 3 22 2.1742 - 2.1407 1.00 2854 146 0.1859 0.2204 REMARK 3 23 2.1407 - 2.1092 1.00 2864 144 0.1943 0.2419 REMARK 3 24 2.1092 - 2.0795 1.00 2876 150 0.2056 0.2480 REMARK 3 25 2.0795 - 2.0514 1.00 2781 176 0.2152 0.2471 REMARK 3 26 2.0514 - 2.0248 1.00 2900 158 0.2243 0.2578 REMARK 3 27 2.0248 - 1.9995 1.00 2826 147 0.2265 0.2515 REMARK 3 28 1.9995 - 1.9754 1.00 2883 150 0.2490 0.2744 REMARK 3 29 1.9754 - 1.9524 1.00 2824 161 0.2644 0.3042 REMARK 3 30 1.9524 - 1.9305 0.96 2773 134 0.2665 0.3077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7837 REMARK 3 ANGLE : 0.984 10690 REMARK 3 CHIRALITY : 0.059 1097 REMARK 3 PLANARITY : 0.007 1404 REMARK 3 DIHEDRAL : 20.048 4617 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2933 8.8749 37.5205 REMARK 3 T TENSOR REMARK 3 T11: 0.1520 T22: 0.1126 REMARK 3 T33: 0.1754 T12: 0.0119 REMARK 3 T13: -0.0131 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.2309 L22: 4.9292 REMARK 3 L33: 4.1838 L12: 0.6785 REMARK 3 L13: 0.2593 L23: -1.1662 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: 0.0670 S13: -0.0962 REMARK 3 S21: -0.3474 S22: 0.0831 S23: 0.1227 REMARK 3 S31: 0.1096 S32: -0.1649 S33: -0.0271 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.5472 21.3106 28.2588 REMARK 3 T TENSOR REMARK 3 T11: 0.3200 T22: 0.1514 REMARK 3 T33: 0.1835 T12: -0.0019 REMARK 3 T13: 0.0230 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 3.6469 L22: 2.1016 REMARK 3 L33: 4.9894 L12: -1.4508 REMARK 3 L13: 2.2324 L23: -1.3428 REMARK 3 S TENSOR REMARK 3 S11: 0.1745 S12: 0.3670 S13: -0.0191 REMARK 3 S21: -0.5427 S22: -0.0995 S23: 0.0290 REMARK 3 S31: -0.0350 S32: 0.0516 S33: -0.0975 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4551 27.6374 41.9477 REMARK 3 T TENSOR REMARK 3 T11: 0.2189 T22: 0.1385 REMARK 3 T33: 0.2167 T12: 0.0254 REMARK 3 T13: -0.0134 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.9938 L22: 1.2841 REMARK 3 L33: 1.1153 L12: 0.0985 REMARK 3 L13: 0.0122 L23: -0.0587 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.0515 S13: 0.1651 REMARK 3 S21: -0.1358 S22: 0.0140 S23: 0.1782 REMARK 3 S31: -0.2185 S32: -0.0902 S33: -0.0072 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5756 11.8698 86.8854 REMARK 3 T TENSOR REMARK 3 T11: 0.3097 T22: 0.3466 REMARK 3 T33: 0.1830 T12: -0.1180 REMARK 3 T13: 0.0052 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 1.9455 L22: 2.2359 REMARK 3 L33: 3.9491 L12: 1.4274 REMARK 3 L13: 1.5286 L23: 1.3790 REMARK 3 S TENSOR REMARK 3 S11: 0.2681 S12: -0.4413 S13: -0.0664 REMARK 3 S21: 0.5549 S22: -0.2615 S23: -0.0880 REMARK 3 S31: 0.1041 S32: 0.1148 S33: -0.0106 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.8713 24.9718 81.5476 REMARK 3 T TENSOR REMARK 3 T11: 0.3325 T22: 0.3168 REMARK 3 T33: 0.2053 T12: -0.1237 REMARK 3 T13: -0.0334 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.4728 L22: 1.3368 REMARK 3 L33: 1.4615 L12: 0.2581 REMARK 3 L13: 0.0629 L23: -0.0541 REMARK 3 S TENSOR REMARK 3 S11: 0.1575 S12: -0.3612 S13: 0.1051 REMARK 3 S21: 0.3334 S22: -0.1811 S23: -0.1950 REMARK 3 S31: -0.2521 S32: 0.2287 S33: 0.0477 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 321 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.9479 11.9067 67.0201 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.1978 REMARK 3 T33: 0.2060 T12: -0.0240 REMARK 3 T13: -0.0062 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.0849 L22: 2.4290 REMARK 3 L33: 2.0288 L12: -0.0265 REMARK 3 L13: 0.1086 L23: -0.7478 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: -0.0180 S13: -0.1284 REMARK 3 S21: -0.0362 S22: -0.1089 S23: -0.2868 REMARK 3 S31: 0.0179 S32: 0.2588 S33: 0.0361 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ONZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200005909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87290 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 48.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 1.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-BICINE PH 8.5, AMINO ACIDS, PEG REMARK 280 4000, GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.11150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.45050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.11150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.45050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.22300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 661 O HOH A 873 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 37 37.66 -88.69 REMARK 500 SER A 55 107.18 -163.34 REMARK 500 THR A 114 -168.83 -111.88 REMARK 500 GLU A 319 71.51 -111.19 REMARK 500 PHE A 349 -106.99 -131.27 REMARK 500 TYR A 375 -107.89 65.28 REMARK 500 LEU A 445 -91.08 -89.02 REMARK 500 PRO B 37 37.96 -84.80 REMARK 500 SER B 55 106.71 -166.38 REMARK 500 ASP B 86 -168.14 -114.87 REMARK 500 THR B 114 -167.79 -113.76 REMARK 500 GLU B 319 70.65 -112.96 REMARK 500 PHE B 349 -113.23 -132.12 REMARK 500 GLU B 374 66.96 -100.76 REMARK 500 TYR B 375 -109.43 69.95 REMARK 500 LEU B 445 -83.90 -91.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 959 DISTANCE = 5.89 ANGSTROMS DBREF 5ONZ A 1 446 UNP K5BDL0 K5BDL0_MYCHD 1 446 DBREF 5ONZ B 1 446 UNP K5BDL0 K5BDL0_MYCHD 1 446 SEQADV 5ONZ GLY A -1 UNP K5BDL0 EXPRESSION TAG SEQADV 5ONZ ALA A 0 UNP K5BDL0 EXPRESSION TAG SEQADV 5ONZ ALA A 182 UNP K5BDL0 ASP 182 ENGINEERED MUTATION SEQADV 5ONZ GLY B -1 UNP K5BDL0 EXPRESSION TAG SEQADV 5ONZ ALA B 0 UNP K5BDL0 EXPRESSION TAG SEQADV 5ONZ ALA B 182 UNP K5BDL0 ASP 182 ENGINEERED MUTATION SEQRES 1 A 448 GLY ALA MET PRO HIS ASP PRO SER PHE THR PRO THR GLN SEQRES 2 A 448 LEU ALA ALA ARG ALA ALA TYR LEU LEU ARG GLY ASN ASP SEQRES 3 A 448 LEU GLY THR MET THR THR ALA ALA PRO LEU LEU TYR PRO SEQRES 4 A 448 HIS MET TRP SER TRP ASP ALA ALA PHE VAL ALA ILE GLY SEQRES 5 A 448 LEU ALA PRO LEU SER VAL GLU ARG ALA VAL VAL GLU LEU SEQRES 6 A 448 ASP THR LEU LEU SER ALA GLN TRP ARG ASN GLY MET ILE SEQRES 7 A 448 PRO HIS ILE VAL PHE ALA ASN GLY VAL ASP GLY TYR PHE SEQRES 8 A 448 PRO GLY PRO ALA ARG TRP ALA THR ALA THR LEU ALA ASP SEQRES 9 A 448 ASN ALA PRO ARG ASN ARG LEU THR SER GLY ILE THR GLN SEQRES 10 A 448 PRO PRO VAL HIS ALA ILE ALA VAL GLN ARG ILE LEU GLU SEQRES 11 A 448 HIS ALA ARG THR ARG GLY ARG SER THR ARG ALA VAL ALA SEQRES 12 A 448 GLU ALA PHE LEU ASP ARG ARG TRP GLY ASP LEU MET ARG SEQRES 13 A 448 TRP HIS ARG TRP LEU ALA GLU CYS ARG ASP ARG ASN GLU SEQRES 14 A 448 ARG GLY ARG ILE THR LEU TYR HIS GLY TRP GLU SER GLY SEQRES 15 A 448 MET ALA ASN SER PRO ARG TRP ASP SER ALA TYR ALA ASN SEQRES 16 A 448 VAL VAL PRO GLY LYS LEU PRO GLU TYR GLN ARG ALA ASP SEQRES 17 A 448 ASN VAL ILE ILE THR ASP PRO SER GLN ARG PRO SER ASP SEQRES 18 A 448 GLY GLU TYR ASP ARG TYR LEU TRP LEU LEU GLU GLU MET SEQRES 19 A 448 LYS ALA VAL ARG TYR ASP ASP GLU ARG LEU PRO SER VAL SEQRES 20 A 448 MET SER PHE GLN VAL GLU ASP VAL PHE PHE SER ALA ILE SEQRES 21 A 448 PHE SER VAL ALA CYS GLN VAL LEU ALA GLU ILE GLY GLU SEQRES 22 A 448 ASP TYR LYS ARG PRO HIS ALA ASP VAL LYS ASP LEU TYR SEQRES 23 A 448 LEU TRP ALA GLU ARG PHE ARG ALA GLY VAL VAL GLU THR SEQRES 24 A 448 THR ASP GLN ARG THR GLY ALA ALA ARG ASP PHE ASP VAL SEQRES 25 A 448 LEU ALA GLU LYS TRP LEU VAL THR GLU THR ALA ALA GLN SEQRES 26 A 448 PHE ALA PRO LEU LEU CYS GLY GLY LEU PRO HIS ASP ARG SEQRES 27 A 448 GLU ARG ALA LEU LEU LYS LEU LEU GLU GLY PRO ARG PHE SEQRES 28 A 448 CYS GLY HIS PRO ASP LEU LYS TYR GLY LEU ILE PRO SER SEQRES 29 A 448 THR SER PRO VAL SER ARG ASP PHE ARG PRO ARG GLU TYR SEQRES 30 A 448 TRP ARG GLY PRO VAL TRP PRO VAL LEU THR TRP LEU PHE SEQRES 31 A 448 SER TRP CYS PHE ALA ARG ARG GLY TRP ALA GLU ARG ALA SEQRES 32 A 448 ARG LEU LEU ARG GLN GLU GLY LEU ARG GLN ALA SER ASP SEQRES 33 A 448 GLY SER PHE ALA GLU TYR TYR GLU PRO PHE THR GLY GLU SEQRES 34 A 448 PRO LEU GLY SER MET GLN GLN SER TRP THR ALA ALA ALA SEQRES 35 A 448 VAL LEU ASP TRP LEU GLY SEQRES 1 B 448 GLY ALA MET PRO HIS ASP PRO SER PHE THR PRO THR GLN SEQRES 2 B 448 LEU ALA ALA ARG ALA ALA TYR LEU LEU ARG GLY ASN ASP SEQRES 3 B 448 LEU GLY THR MET THR THR ALA ALA PRO LEU LEU TYR PRO SEQRES 4 B 448 HIS MET TRP SER TRP ASP ALA ALA PHE VAL ALA ILE GLY SEQRES 5 B 448 LEU ALA PRO LEU SER VAL GLU ARG ALA VAL VAL GLU LEU SEQRES 6 B 448 ASP THR LEU LEU SER ALA GLN TRP ARG ASN GLY MET ILE SEQRES 7 B 448 PRO HIS ILE VAL PHE ALA ASN GLY VAL ASP GLY TYR PHE SEQRES 8 B 448 PRO GLY PRO ALA ARG TRP ALA THR ALA THR LEU ALA ASP SEQRES 9 B 448 ASN ALA PRO ARG ASN ARG LEU THR SER GLY ILE THR GLN SEQRES 10 B 448 PRO PRO VAL HIS ALA ILE ALA VAL GLN ARG ILE LEU GLU SEQRES 11 B 448 HIS ALA ARG THR ARG GLY ARG SER THR ARG ALA VAL ALA SEQRES 12 B 448 GLU ALA PHE LEU ASP ARG ARG TRP GLY ASP LEU MET ARG SEQRES 13 B 448 TRP HIS ARG TRP LEU ALA GLU CYS ARG ASP ARG ASN GLU SEQRES 14 B 448 ARG GLY ARG ILE THR LEU TYR HIS GLY TRP GLU SER GLY SEQRES 15 B 448 MET ALA ASN SER PRO ARG TRP ASP SER ALA TYR ALA ASN SEQRES 16 B 448 VAL VAL PRO GLY LYS LEU PRO GLU TYR GLN ARG ALA ASP SEQRES 17 B 448 ASN VAL ILE ILE THR ASP PRO SER GLN ARG PRO SER ASP SEQRES 18 B 448 GLY GLU TYR ASP ARG TYR LEU TRP LEU LEU GLU GLU MET SEQRES 19 B 448 LYS ALA VAL ARG TYR ASP ASP GLU ARG LEU PRO SER VAL SEQRES 20 B 448 MET SER PHE GLN VAL GLU ASP VAL PHE PHE SER ALA ILE SEQRES 21 B 448 PHE SER VAL ALA CYS GLN VAL LEU ALA GLU ILE GLY GLU SEQRES 22 B 448 ASP TYR LYS ARG PRO HIS ALA ASP VAL LYS ASP LEU TYR SEQRES 23 B 448 LEU TRP ALA GLU ARG PHE ARG ALA GLY VAL VAL GLU THR SEQRES 24 B 448 THR ASP GLN ARG THR GLY ALA ALA ARG ASP PHE ASP VAL SEQRES 25 B 448 LEU ALA GLU LYS TRP LEU VAL THR GLU THR ALA ALA GLN SEQRES 26 B 448 PHE ALA PRO LEU LEU CYS GLY GLY LEU PRO HIS ASP ARG SEQRES 27 B 448 GLU ARG ALA LEU LEU LYS LEU LEU GLU GLY PRO ARG PHE SEQRES 28 B 448 CYS GLY HIS PRO ASP LEU LYS TYR GLY LEU ILE PRO SER SEQRES 29 B 448 THR SER PRO VAL SER ARG ASP PHE ARG PRO ARG GLU TYR SEQRES 30 B 448 TRP ARG GLY PRO VAL TRP PRO VAL LEU THR TRP LEU PHE SEQRES 31 B 448 SER TRP CYS PHE ALA ARG ARG GLY TRP ALA GLU ARG ALA SEQRES 32 B 448 ARG LEU LEU ARG GLN GLU GLY LEU ARG GLN ALA SER ASP SEQRES 33 B 448 GLY SER PHE ALA GLU TYR TYR GLU PRO PHE THR GLY GLU SEQRES 34 B 448 PRO LEU GLY SER MET GLN GLN SER TRP THR ALA ALA ALA SEQRES 35 B 448 VAL LEU ASP TRP LEU GLY HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET 9YW A 509 16 HET 9YW A 510 16 HET SER A 511 7 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HET GOL B 505 6 HET GOL B 506 6 HET GOL B 507 6 HET 9YW B 508 16 HET SER B 509 7 HETNAM GOL GLYCEROL HETNAM 9YW (ALPHA-D-GLUCOPYRANOSYLOXY)ACETIC ACID HETNAM SER SERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 9YW GLUCOSYLGLYCOLATE; (ALPHA-D-GLUCOSYLOXY)ACETIC ACID; HETSYN 2 9YW (D-GLUCOSYLOXY)ACETIC ACID; (GLUCOSYLOXY)ACETIC ACID FORMUL 3 GOL 15(C3 H8 O3) FORMUL 11 9YW 3(C8 H14 O8) FORMUL 13 SER 2(C3 H7 N O3) FORMUL 23 HOH *677(H2 O) HELIX 1 AA1 THR A 8 ASN A 23 1 16 HELIX 2 AA2 SER A 41 ALA A 52 1 12 HELIX 3 AA3 SER A 55 ALA A 69 1 15 HELIX 4 AA4 GLY A 91 ALA A 96 1 6 HELIX 5 AA5 ALA A 96 ALA A 101 1 6 HELIX 6 AA6 VAL A 118 GLY A 134 1 17 HELIX 7 AA7 GLY A 134 ARG A 163 1 30 HELIX 8 AA8 HIS A 175 GLY A 180 5 6 HELIX 9 AA9 SER A 184 ARG A 186 5 3 HELIX 10 AB1 TRP A 187 ALA A 192 1 6 HELIX 11 AB2 ALA A 205 ILE A 210 1 6 HELIX 12 AB3 ASP A 212 ARG A 216 5 5 HELIX 13 AB4 SER A 218 VAL A 235 1 18 HELIX 14 AB5 ARG A 241 MET A 246 1 6 HELIX 15 AB6 VAL A 253 TYR A 273 1 21 HELIX 16 AB7 PRO A 276 THR A 297 1 22 HELIX 17 AB8 THR A 320 GLN A 323 5 4 HELIX 18 AB9 PHE A 324 GLY A 330 1 7 HELIX 19 AC1 PRO A 333 GLY A 346 1 14 HELIX 20 AC2 TRP A 381 GLY A 396 1 16 HELIX 21 AC3 TRP A 397 SER A 413 1 17 HELIX 22 AC4 GLN A 434 GLY A 446 1 13 HELIX 23 AC5 THR B 8 ASN B 23 1 16 HELIX 24 AC6 SER B 41 ALA B 52 1 12 HELIX 25 AC7 SER B 55 ALA B 69 1 15 HELIX 26 AC8 GLY B 91 ALA B 96 1 6 HELIX 27 AC9 ALA B 96 ALA B 101 1 6 HELIX 28 AD1 VAL B 118 THR B 132 1 15 HELIX 29 AD2 GLY B 134 ARG B 163 1 30 HELIX 30 AD3 HIS B 175 GLY B 180 5 6 HELIX 31 AD4 SER B 184 ARG B 186 5 3 HELIX 32 AD5 TRP B 187 ALA B 192 1 6 HELIX 33 AD6 ALA B 205 ILE B 210 1 6 HELIX 34 AD7 ASP B 212 ARG B 216 5 5 HELIX 35 AD8 SER B 218 VAL B 235 1 18 HELIX 36 AD9 ARG B 241 MET B 246 1 6 HELIX 37 AE1 VAL B 253 TYR B 273 1 21 HELIX 38 AE2 PRO B 276 THR B 297 1 22 HELIX 39 AE3 THR B 320 GLN B 323 5 4 HELIX 40 AE4 PHE B 324 GLY B 330 1 7 HELIX 41 AE5 PRO B 333 GLY B 346 1 14 HELIX 42 AE6 TRP B 381 ARG B 395 1 15 HELIX 43 AE7 TRP B 397 SER B 413 1 17 HELIX 44 AE8 GLN B 434 GLY B 446 1 13 SHEET 1 AA1 2 MET A 39 TRP A 40 0 SHEET 2 AA1 2 ILE A 79 VAL A 80 -1 O VAL A 80 N MET A 39 SHEET 1 AA2 4 ILE A 171 LEU A 173 0 SHEET 2 AA2 4 VAL A 250 ASP A 252 -1 O VAL A 250 N LEU A 173 SHEET 3 AA2 4 ASP A 307 ASP A 309 -1 O PHE A 308 N GLU A 251 SHEET 4 AA2 4 LYS A 314 LEU A 316 -1 O LEU A 316 N ASP A 307 SHEET 1 AA3 2 TYR A 420 TYR A 421 0 SHEET 2 AA3 2 PRO A 428 LEU A 429 -1 O LEU A 429 N TYR A 420 SHEET 1 AA4 2 MET B 39 TRP B 40 0 SHEET 2 AA4 2 ILE B 79 VAL B 80 -1 O VAL B 80 N MET B 39 SHEET 1 AA5 4 ILE B 171 LEU B 173 0 SHEET 2 AA5 4 VAL B 250 ASP B 252 -1 O VAL B 250 N LEU B 173 SHEET 3 AA5 4 ASP B 307 ASP B 309 -1 O PHE B 308 N GLU B 251 SHEET 4 AA5 4 LYS B 314 LEU B 316 -1 O LEU B 316 N ASP B 307 SHEET 1 AA6 2 TYR B 420 TYR B 421 0 SHEET 2 AA6 2 PRO B 428 LEU B 429 -1 O LEU B 429 N TYR B 420 CISPEP 1 PHE A 89 PRO A 90 0 7.43 CISPEP 2 PHE B 89 PRO B 90 0 5.02 CRYST1 86.223 158.901 87.953 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011370 0.00000