HEADER OXIDOREDUCTASE 09-AUG-17 5OP6 TITLE FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC AND GSK128863 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ON-HEME, DIOXYGENASE, OXYGENASE, DNA-BINDING, METAL-BINDING, KEYWDS 2 TRANSCRIPTION, HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, KEYWDS 3 ASPARAGINYL/ASPARTYL HYDROXYLASE, EPIGENETIC REGULATION, SIGNALING, KEYWDS 4 ARD, BETA-HYDROXYLATION, ACTIVATOR-INHIBITOR, OXIDOREDUCTASE-PEPTIDE KEYWDS 5 COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.M.LEISSING,C.J.SCHOFIELD,I.J.CLIFTON,C.C.THINNES,X.LU REVDAT 3 17-JAN-24 5OP6 1 REMARK REVDAT 2 21-FEB-18 5OP6 1 JRNL REVDAT 1 18-OCT-17 5OP6 0 JRNL AUTH T.L.YEH,T.M.LEISSING,M.I.ABBOUD,C.C.THINNES,O.ATASOYLU, JRNL AUTH 2 J.P.HOLT-MARTYN,D.ZHANG,A.TUMBER,K.LIPPL,C.T.LOHANS, JRNL AUTH 3 I.K.H.LEUNG,H.MORCRETTE,I.J.CLIFTON,T.D.W.CLARIDGE, JRNL AUTH 4 A.KAWAMURA,E.FLASHMAN,X.LU,P.J.RATCLIFFE,R.CHOWDHURY, JRNL AUTH 5 C.W.PUGH,C.J.SCHOFIELD JRNL TITL MOLECULAR AND CELLULAR MECHANISMS OF HIF PROLYL HYDROXYLASE JRNL TITL 2 INHIBITORS IN CLINICAL TRIALS. JRNL REF CHEM SCI V. 8 7651 2017 JRNL REFN ISSN 2041-6520 JRNL PMID 29435217 JRNL DOI 10.1039/C7SC02103H REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3074 - 4.8942 1.00 2703 118 0.2046 0.2131 REMARK 3 2 4.8942 - 3.8873 1.00 2548 129 0.1600 0.1789 REMARK 3 3 3.8873 - 3.3966 1.00 2475 155 0.1881 0.2207 REMARK 3 4 3.3966 - 3.0864 1.00 2474 138 0.2218 0.2746 REMARK 3 5 3.0864 - 2.8654 1.00 2459 126 0.2254 0.2544 REMARK 3 6 2.8654 - 2.6965 1.00 2452 129 0.2447 0.2682 REMARK 3 7 2.6965 - 2.5616 1.00 2470 135 0.2720 0.2925 REMARK 3 8 2.5616 - 2.4501 1.00 2432 121 0.2970 0.3087 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2747 REMARK 3 ANGLE : 0.569 3744 REMARK 3 CHIRALITY : 0.043 385 REMARK 3 PLANARITY : 0.003 492 REMARK 3 DIHEDRAL : 11.335 1597 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6428 32.4798 -22.1098 REMARK 3 T TENSOR REMARK 3 T11: 0.4853 T22: 0.7840 REMARK 3 T33: 0.7352 T12: 0.0106 REMARK 3 T13: -0.0639 T23: 0.2513 REMARK 3 L TENSOR REMARK 3 L11: 0.5481 L22: 0.8565 REMARK 3 L33: 0.5255 L12: -0.5479 REMARK 3 L13: -0.0979 L23: -0.3307 REMARK 3 S TENSOR REMARK 3 S11: -0.2708 S12: 0.6476 S13: 0.7613 REMARK 3 S21: -0.1511 S22: -0.1619 S23: 0.2124 REMARK 3 S31: -0.3803 S32: 0.4149 S33: -0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1726 20.3848 -22.5961 REMARK 3 T TENSOR REMARK 3 T11: 0.3965 T22: 0.7613 REMARK 3 T33: 0.4507 T12: 0.0697 REMARK 3 T13: -0.0327 T23: 0.1444 REMARK 3 L TENSOR REMARK 3 L11: 1.2786 L22: 1.2901 REMARK 3 L33: 1.6622 L12: 0.6393 REMARK 3 L13: 0.7315 L23: -0.7372 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: 0.5404 S13: 0.1209 REMARK 3 S21: -0.3878 S22: 0.2210 S23: 0.2453 REMARK 3 S31: 0.0693 S32: -0.1341 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5507 29.8186 -1.4789 REMARK 3 T TENSOR REMARK 3 T11: 0.6177 T22: 1.1074 REMARK 3 T33: 0.7035 T12: 0.1283 REMARK 3 T13: 0.0853 T23: -0.1126 REMARK 3 L TENSOR REMARK 3 L11: 0.5336 L22: 0.2460 REMARK 3 L33: 0.1758 L12: -0.1749 REMARK 3 L13: -0.0201 L23: 0.2323 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: -1.1299 S13: 0.2040 REMARK 3 S21: 0.5546 S22: -0.3562 S23: 0.3531 REMARK 3 S31: 0.0339 S32: -1.1248 S33: 0.0026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5190 23.3016 7.1377 REMARK 3 T TENSOR REMARK 3 T11: 0.7109 T22: 1.1989 REMARK 3 T33: 0.6792 T12: -0.0855 REMARK 3 T13: 0.0191 T23: 0.1402 REMARK 3 L TENSOR REMARK 3 L11: 0.1281 L22: 0.4931 REMARK 3 L33: 0.0360 L12: -0.1872 REMARK 3 L13: 0.0505 L23: 0.0131 REMARK 3 S TENSOR REMARK 3 S11: -0.3302 S12: -0.5832 S13: 0.1178 REMARK 3 S21: 1.4055 S22: -0.1822 S23: -0.4990 REMARK 3 S31: -0.6284 S32: -0.3982 S33: -0.0022 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1755 32.7124 0.6752 REMARK 3 T TENSOR REMARK 3 T11: 0.7000 T22: 1.3986 REMARK 3 T33: 0.7012 T12: 0.2277 REMARK 3 T13: 0.1547 T23: -0.0875 REMARK 3 L TENSOR REMARK 3 L11: 0.4131 L22: 1.0441 REMARK 3 L33: 0.5245 L12: -0.6005 REMARK 3 L13: 0.4026 L23: -0.7023 REMARK 3 S TENSOR REMARK 3 S11: -0.1390 S12: -1.3026 S13: 0.5236 REMARK 3 S21: 0.8397 S22: -0.1712 S23: -0.2475 REMARK 3 S31: -0.6491 S32: -1.3345 S33: 0.0018 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1033 21.2443 -11.0409 REMARK 3 T TENSOR REMARK 3 T11: 0.3204 T22: 0.6085 REMARK 3 T33: 0.4740 T12: 0.0246 REMARK 3 T13: 0.0161 T23: 0.1307 REMARK 3 L TENSOR REMARK 3 L11: 3.3487 L22: 0.5129 REMARK 3 L33: 2.9983 L12: -0.6465 REMARK 3 L13: 2.0962 L23: -0.4345 REMARK 3 S TENSOR REMARK 3 S11: 0.0909 S12: -0.1194 S13: 0.1852 REMARK 3 S21: 0.1332 S22: 0.0031 S23: 0.0920 REMARK 3 S31: -0.0053 S32: -0.1798 S33: 0.0061 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6330 3.5458 -2.6630 REMARK 3 T TENSOR REMARK 3 T11: 0.5873 T22: 0.5817 REMARK 3 T33: 0.5451 T12: -0.0201 REMARK 3 T13: -0.1082 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 1.4991 L22: 1.9780 REMARK 3 L33: 0.3490 L12: -0.9249 REMARK 3 L13: 0.2395 L23: -0.6339 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: -0.0933 S13: -0.2058 REMARK 3 S21: -0.0752 S22: -0.0902 S23: 0.3684 REMARK 3 S31: 0.3170 S32: -0.3373 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21126 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 1.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: TETRAGONAL BIPYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 1.1M AMMONIUM REMARK 280 SULFATE, 2.5% PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.53500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.10500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.76750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.10500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.30250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.10500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.10500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.76750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.10500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.10500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.30250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.53500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 117 REMARK 465 SER A 118 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LEU A 23 CD1 CD2 REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 58 CG OD1 ND2 REMARK 470 ASN A 87 CG OD1 ND2 REMARK 470 SER A 94 OG REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 106 CD CE NZ REMARK 470 ASN A 110 CG OD1 ND2 REMARK 470 ASN A 113 CG OD1 ND2 REMARK 470 PHE A 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 124 CD CE NZ REMARK 470 LYS A 131 CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LEU A 144 CD1 CD2 REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 172 CD CE NZ REMARK 470 GLN A 181 CD OE1 NE2 REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 LYS A 298 CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 306 CD1 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 345 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 46.68 -146.13 REMARK 500 ASP A 104 109.34 -56.76 REMARK 500 ARG A 138 -9.54 82.14 REMARK 500 LEU A 182 106.26 -57.05 REMARK 500 ILE A 210 -60.20 -123.25 REMARK 500 ARG A 238 -5.92 82.96 REMARK 500 ASN A 246 76.24 -153.98 REMARK 500 ASN A 332 115.80 -166.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 123.6 REMARK 620 3 HIS A 279 NE2 84.2 90.7 REMARK 620 4 A0W A 404 O19 102.2 131.8 109.4 REMARK 620 5 A0W A 404 O11 69.6 100.6 153.6 80.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A0W A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 DBREF 5OP6 A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQADV 5OP6 SER A -1 UNP Q9NWT6 EXPRESSION TAG SEQADV 5OP6 HIS A 0 UNP Q9NWT6 EXPRESSION TAG SEQRES 1 A 351 SER HIS MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER SEQRES 2 A 351 GLY SER GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY SEQRES 3 A 351 PRO ALA TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE SEQRES 4 A 351 PRO THR ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO SEQRES 5 A 351 ARG ALA GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL SEQRES 6 A 351 LEU THR ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP SEQRES 7 A 351 ASP LEU GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP SEQRES 8 A 351 PHE SER VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR SEQRES 9 A 351 TYR ASP GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS SEQRES 10 A 351 PRO ARG SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE SEQRES 11 A 351 VAL GLU LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU SEQRES 12 A 351 GLU ARG LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL SEQRES 13 A 351 GLY ARG LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP SEQRES 14 A 351 ASN TRP ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY SEQRES 15 A 351 GLN LEU THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY SEQRES 16 A 351 ASN VAL THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE SEQRES 17 A 351 PHE ALA GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE SEQRES 18 A 351 PRO PRO ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL SEQRES 19 A 351 HIS HIS PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP SEQRES 20 A 351 ASN PRO ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL SEQRES 21 A 351 VAL GLY TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU SEQRES 22 A 351 TYR ILE PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU SEQRES 23 A 351 LEU ASN GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR SEQRES 24 A 351 LYS GLY ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU SEQRES 25 A 351 LYS ALA HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU SEQRES 26 A 351 LYS MET LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL SEQRES 27 A 351 GLY PRO LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET ZN A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET A0W A 404 54 HET GOL A 405 14 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM A0W 2-[[1,3-DICYCLOHEXYL-4-OXIDANYL-2,6-BIS(OXIDANYLIDENE) HETNAM 2 A0W PYRIMIDIN-5-YL]CARBONYLAMINO]ETHANOIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 A0W C19 H27 N3 O6 FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *46(H2 O) HELIX 1 AA1 GLU A 19 LEU A 23 5 5 HELIX 2 AA2 ASP A 28 LEU A 32 5 5 HELIX 3 AA3 ASP A 49 ASN A 58 1 10 HELIX 4 AA4 VAL A 70 TRP A 76 5 7 HELIX 5 AA5 ASP A 77 ILE A 85 1 9 HELIX 6 AA6 ASP A 104 ALA A 109 5 6 HELIX 7 AA7 LYS A 124 GLN A 137 1 14 HELIX 8 AA8 ARG A 138 GLY A 140 5 3 HELIX 9 AA9 GLY A 155 GLY A 164 1 10 HELIX 10 AB1 ASN A 166 ARG A 177 1 12 HELIX 11 AB2 PRO A 220 ASP A 222 5 3 HELIX 12 AB3 GLN A 223 TYR A 228 1 6 HELIX 13 AB4 PHE A 252 VAL A 258 5 7 HELIX 14 AB5 LYS A 311 LEU A 330 1 20 HELIX 15 AB6 ASN A 332 GLN A 334 5 3 HELIX 16 AB7 GLU A 335 LYS A 345 1 11 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O GLU A 282 N ARG A 215 SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187 SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N SER A 91 O GLN A 147 SHEET 9 AA2 9 ARG A 120 MET A 123 -1 O MET A 123 N PHE A 90 LINK NE2 HIS A 199 ZN ZN A 401 1555 1555 2.05 LINK OD2 ASP A 201 ZN ZN A 401 1555 1555 1.99 LINK NE2 HIS A 279 ZN ZN A 401 1555 1555 2.07 LINK ZN ZN A 401 O19 A0W A 404 1555 1555 2.04 LINK ZN ZN A 401 O11 A0W A 404 1555 1555 2.21 CISPEP 1 TYR A 308 PRO A 309 0 -4.58 SITE 1 AC1 4 HIS A 199 ASP A 201 HIS A 279 A0W A 404 SITE 1 AC2 3 ALA A 312 HOH A 514 HOH A 537 SITE 1 AC3 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC4 17 TYR A 93 PHE A 100 LEU A 101 TYR A 102 SITE 2 AC4 17 TYR A 145 GLN A 147 LEU A 188 THR A 196 SITE 3 AC4 17 HIS A 199 ASP A 201 PHE A 207 LYS A 214 SITE 4 AC4 17 ARG A 238 HIS A 279 ILE A 281 ZN A 401 SITE 5 AC4 17 GOL A 405 SITE 1 AC5 3 ASP A 201 TRP A 296 A0W A 404 CRYST1 86.210 86.210 147.070 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006799 0.00000