HEADER SIGNALING PROTEIN 09-AUG-17 5OPE TITLE ROBO1 IG1-4 CRYSTALS FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROUNDABOUT HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DELETED IN U TWENTY TWENTY,H-ROBO-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ROBO1, DUTT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: EXPRESSION PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PTT3 KEYWDS NEURONAL RECEPTOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.ALEKSANDROVA,I.GUTSCHE,E.KANDIAH,S.V.AVILOV,M.V.PETOUKHOV, AUTHOR 2 E.SEIRADAKE,A.A.MCCARTHY REVDAT 5 17-JAN-24 5OPE 1 REMARK REVDAT 4 08-AUG-18 5OPE 1 REMARK REVDAT 3 02-MAY-18 5OPE 1 REMARK REVDAT 2 14-FEB-18 5OPE 1 JRNL REVDAT 1 17-JAN-18 5OPE 0 JRNL AUTH N.ALEKSANDROVA,I.GUTSCHE,E.KANDIAH,S.V.AVILOV,M.V.PETOUKHOV, JRNL AUTH 2 E.SEIRADAKE,A.A.MCCARTHY JRNL TITL ROBO1 FORMS A COMPACT DIMER-OF-DIMERS ASSEMBLY. JRNL REF STRUCTURE V. 26 320 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29307485 JRNL DOI 10.1016/J.STR.2017.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 17735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 897 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.71 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2499 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2524 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2375 REMARK 3 BIN R VALUE (WORKING SET) : 0.2489 REMARK 3 BIN FREE R VALUE : 0.3177 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.96 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 124 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2690 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.00340 REMARK 3 B22 (A**2) : 11.56770 REMARK 3 B33 (A**2) : -23.57110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.390 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.394 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.282 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.362 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.277 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.864 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.794 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2772 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3799 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 883 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 490 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2772 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 393 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2800 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.59 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.03 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -14.9380 0.1155 43.6112 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: -0.1076 REMARK 3 T33: -0.0516 T12: 0.0405 REMARK 3 T13: -0.2102 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 0.0727 L22: 1.2560 REMARK 3 L33: 0.4188 L12: -0.2707 REMARK 3 L13: -0.0554 L23: 0.2982 REMARK 3 S TENSOR REMARK 3 S11: 0.0807 S12: 0.0371 S13: -0.0418 REMARK 3 S21: -0.2126 S22: -0.0500 S23: 0.0113 REMARK 3 S31: 0.1645 S32: 0.0861 S33: -0.0307 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS OCT 2015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.9.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 5O5G REMARK 200 REMARK 200 REMARK: PLATE LIKE MORPHOLOGY REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M AMMONIUM PHOSPHATE, 100 MM NA REMARK 280 CRITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.58750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 123.58750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.72850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.56700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.72850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.56700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 123.58750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.72850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.56700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 123.58750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.72850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.56700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 63 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 PHE A 66 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 70 CG1 CG2 CD1 REMARK 470 VAL A 71 CG1 CG2 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 HIS A 73 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 75 OG REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 LEU A 77 CB CG CD1 CD2 REMARK 470 ILE A 78 CG1 CG2 CD1 REMARK 470 VAL A 79 CG1 CG2 REMARK 470 SER A 80 OG REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 THR A 86 OG1 CG2 REMARK 470 LEU A 87 CG CD1 CD2 REMARK 470 ASN A 88 CG OD1 ND2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 THR A 96 OG1 CG2 REMARK 470 THR A 98 OG1 CG2 REMARK 470 ILE A 99 CG1 CG2 CD1 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 TRP A 101 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 101 CZ3 CH2 REMARK 470 TYR A 102 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 108 CG1 CG2 REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 THR A 110 OG1 CG2 REMARK 470 ASP A 111 CG OD1 OD2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 ASP A 113 CG OD1 OD2 REMARK 470 ASP A 114 CG OD1 OD2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 SER A 117 OG REMARK 470 HIS A 118 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 MET A 120 CG SD CE REMARK 470 LEU A 121 CG CD1 CD2 REMARK 470 LEU A 122 CG CD1 CD2 REMARK 470 SER A 124 OG REMARK 470 SER A 126 OG REMARK 470 LEU A 127 CG CD1 CD2 REMARK 470 PHE A 128 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 129 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 130 CG CD1 CD2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 132 CG1 CG2 CD1 REMARK 470 VAL A 133 CG1 CG2 REMARK 470 HIS A 134 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 SER A 138 OG REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 141 CG OD1 OD2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 VAL A 144 CG1 CG2 REMARK 470 TYR A 145 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 146 CG1 CG2 REMARK 470 VAL A 148 CG1 CG2 REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 151 CG OD1 ND2 REMARK 470 TYR A 152 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 153 CG CD1 CD2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 VAL A 157 CG1 CG2 REMARK 470 SER A 158 OG REMARK 470 HIS A 159 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 160 CG OD1 ND2 REMARK 470 SER A 162 OG REMARK 470 LEU A 163 CG CD1 CD2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 VAL A 165 CG1 CG2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 GLN A 400 CG CD OE1 NE2 REMARK 470 SER A 401 OG REMARK 470 SER A 403 OG REMARK 470 GLN A 409 CG CD OE1 NE2 REMARK 470 ASP A 447 CG OD1 OD2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 64 REMARK 475 ASP A 65 REMARK 475 PHE A 66 REMARK 475 PRO A 67 REMARK 475 PRO A 68 REMARK 475 ARG A 69 REMARK 475 ILE A 70 REMARK 475 VAL A 71 REMARK 475 GLU A 72 REMARK 475 HIS A 73 REMARK 475 PRO A 74 REMARK 475 SER A 75 REMARK 475 ASP A 76 REMARK 475 LEU A 77 REMARK 475 ILE A 78 REMARK 475 VAL A 79 REMARK 475 SER A 80 REMARK 475 LYS A 81 REMARK 475 GLY A 82 REMARK 475 GLU A 83 REMARK 475 PRO A 84 REMARK 475 ALA A 85 REMARK 475 THR A 86 REMARK 475 LEU A 87 REMARK 475 ASN A 88 REMARK 475 CYS A 89 REMARK 475 LYS A 90 REMARK 475 ALA A 91 REMARK 475 GLU A 92 REMARK 475 GLY A 93 REMARK 475 ARG A 94 REMARK 475 PRO A 95 REMARK 475 THR A 96 REMARK 475 PRO A 97 REMARK 475 THR A 98 REMARK 475 ILE A 99 REMARK 475 GLU A 100 REMARK 475 TRP A 101 REMARK 475 TYR A 102 REMARK 475 LYS A 103 REMARK 475 GLY A 104 REMARK 475 GLY A 105 REMARK 475 GLU A 106 REMARK 475 ARG A 107 REMARK 475 VAL A 108 REMARK 475 GLU A 109 REMARK 475 THR A 110 REMARK 475 ASP A 111 REMARK 475 LYS A 112 REMARK 475 ASP A 113 REMARK 475 ASP A 114 REMARK 475 PRO A 115 REMARK 475 ARG A 116 REMARK 475 SER A 117 REMARK 475 HIS A 118 REMARK 475 ARG A 119 REMARK 475 MET A 120 REMARK 475 LEU A 121 REMARK 475 LEU A 122 REMARK 475 PRO A 123 REMARK 475 SER A 124 REMARK 475 GLY A 125 REMARK 475 SER A 126 REMARK 475 LEU A 127 REMARK 475 PHE A 128 REMARK 475 PHE A 129 REMARK 475 LEU A 130 REMARK 475 ARG A 131 REMARK 475 ILE A 132 REMARK 475 VAL A 133 REMARK 475 HIS A 134 REMARK 475 GLY A 135 REMARK 475 ARG A 136 REMARK 475 LYS A 137 REMARK 475 SER A 138 REMARK 475 ARG A 139 REMARK 475 PRO A 140 REMARK 475 ASP A 141 REMARK 475 GLU A 142 REMARK 475 GLY A 143 REMARK 475 VAL A 144 REMARK 475 TYR A 145 REMARK 475 VAL A 146 REMARK 475 CYS A 147 REMARK 475 VAL A 148 REMARK 475 ALA A 149 REMARK 475 ARG A 150 REMARK 475 ASN A 151 REMARK 475 TYR A 152 REMARK 475 LEU A 153 REMARK 475 GLY A 154 REMARK 475 GLU A 155 REMARK 475 ALA A 156 REMARK 475 VAL A 157 REMARK 475 SER A 158 REMARK 475 HIS A 159 REMARK 475 ASN A 160 REMARK 475 ALA A 161 REMARK 475 SER A 162 REMARK 475 LEU A 163 REMARK 475 GLU A 164 REMARK 475 VAL A 165 REMARK 475 ALA A 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 139 69.21 -151.98 REMARK 500 ASN A 151 -150.77 -119.93 REMARK 500 SER A 305 -3.30 62.32 REMARK 500 HIS A 313 26.50 88.43 REMARK 500 ASN A 432 -159.91 -148.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 DBREF 5OPE A 63 447 UNP Q9Y6N7 ROBO1_HUMAN 24 408 SEQRES 1 A 385 GLN GLU ASP PHE PRO PRO ARG ILE VAL GLU HIS PRO SER SEQRES 2 A 385 ASP LEU ILE VAL SER LYS GLY GLU PRO ALA THR LEU ASN SEQRES 3 A 385 CYS LYS ALA GLU GLY ARG PRO THR PRO THR ILE GLU TRP SEQRES 4 A 385 TYR LYS GLY GLY GLU ARG VAL GLU THR ASP LYS ASP ASP SEQRES 5 A 385 PRO ARG SER HIS ARG MET LEU LEU PRO SER GLY SER LEU SEQRES 6 A 385 PHE PHE LEU ARG ILE VAL HIS GLY ARG LYS SER ARG PRO SEQRES 7 A 385 ASP GLU GLY VAL TYR VAL CYS VAL ALA ARG ASN TYR LEU SEQRES 8 A 385 GLY GLU ALA VAL SER HIS ASN ALA SER LEU GLU VAL ALA SEQRES 9 A 385 ILE LEU ARG ASP ASP PHE ARG GLN ASN PRO SER ASP VAL SEQRES 10 A 385 MET VAL ALA VAL GLY GLU PRO ALA VAL MET GLU CYS GLN SEQRES 11 A 385 PRO PRO ARG GLY HIS PRO GLU PRO THR ILE SER TRP LYS SEQRES 12 A 385 LYS ASP GLY SER PRO LEU ASP ASP LYS ASP GLU ARG ILE SEQRES 13 A 385 THR ILE ARG GLY GLY LYS LEU MET ILE THR TYR THR ARG SEQRES 14 A 385 LYS SER ASP ALA GLY LYS TYR VAL CYS VAL GLY THR ASN SEQRES 15 A 385 MET VAL GLY GLU ARG GLU SER GLU VAL ALA GLU LEU THR SEQRES 16 A 385 VAL LEU GLU ARG PRO SER PHE VAL LYS ARG PRO SER ASN SEQRES 17 A 385 LEU ALA VAL THR VAL ASP ASP SER ALA GLU PHE LYS CYS SEQRES 18 A 385 GLU ALA ARG GLY ASP PRO VAL PRO THR VAL ARG TRP ARG SEQRES 19 A 385 LYS ASP ASP GLY GLU LEU PRO LYS SER ARG TYR GLU ILE SEQRES 20 A 385 ARG ASP ASP HIS THR LEU LYS ILE ARG LYS VAL THR ALA SEQRES 21 A 385 GLY ASP MET GLY SER TYR THR CYS VAL ALA GLU ASN MET SEQRES 22 A 385 VAL GLY LYS ALA GLU ALA SER ALA THR LEU THR VAL GLN SEQRES 23 A 385 GLU PRO PRO HIS PHE VAL VAL LYS PRO ARG ASP GLN VAL SEQRES 24 A 385 VAL ALA LEU GLY ARG THR VAL THR PHE GLN CYS GLU ALA SEQRES 25 A 385 THR GLY ASN PRO GLN PRO ALA ILE PHE TRP ARG ARG GLU SEQRES 26 A 385 GLY SER GLN ASN LEU LEU PHE SER TYR GLN PRO PRO GLN SEQRES 27 A 385 SER SER SER ARG PHE SER VAL SER GLN THR GLY ASP LEU SEQRES 28 A 385 THR ILE THR ASN VAL GLN ARG SER ASP VAL GLY TYR TYR SEQRES 29 A 385 ILE CYS GLN THR LEU ASN VAL ALA GLY SER ILE ILE THR SEQRES 30 A 385 LYS ALA TYR LEU GLU VAL THR ASP HET PO4 A 501 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *133(H2 O) HELIX 1 AA1 ARG A 231 ALA A 235 5 5 HELIX 2 AA2 THR A 321 MET A 325 5 5 HELIX 3 AA3 GLN A 419 VAL A 423 5 5 SHEET 1 AA1 2 ARG A 69 GLU A 72 0 SHEET 2 AA1 2 LYS A 90 GLU A 92 -1 O LYS A 90 N VAL A 71 SHEET 1 AA2 3 VAL A 79 SER A 80 0 SHEET 2 AA2 3 VAL A 165 LEU A 168 1 O ALA A 166 N VAL A 79 SHEET 3 AA2 3 GLY A 196 HIS A 197 -1 O HIS A 197 N ILE A 167 SHEET 1 AA3 3 ALA A 85 THR A 86 0 SHEET 2 AA3 3 LEU A 127 PHE A 129 -1 O PHE A 129 N ALA A 85 SHEET 3 AA3 3 MET A 120 LEU A 121 -1 N MET A 120 O PHE A 128 SHEET 1 AA4 4 GLU A 106 ARG A 107 0 SHEET 2 AA4 4 GLU A 100 LYS A 103 -1 N LYS A 103 O GLU A 106 SHEET 3 AA4 4 VAL A 146 ARG A 150 -1 O VAL A 148 N GLU A 100 SHEET 4 AA4 4 GLU A 155 VAL A 157 -1 O ALA A 156 N ALA A 149 SHEET 1 AA5 4 VAL A 179 ALA A 182 0 SHEET 2 AA5 4 ALA A 254 LYS A 266 1 O LEU A 259 N VAL A 181 SHEET 3 AA5 4 GLY A 236 THR A 243 -1 N GLY A 236 O LEU A 256 SHEET 4 AA5 4 GLU A 248 GLU A 250 -1 O ARG A 249 N GLY A 242 SHEET 1 AA6 5 SER A 209 PRO A 210 0 SHEET 2 AA6 5 THR A 201 LYS A 206 -1 N LYS A 206 O SER A 209 SHEET 3 AA6 5 GLY A 236 THR A 243 -1 O VAL A 241 N SER A 203 SHEET 4 AA6 5 ALA A 254 LYS A 266 -1 O LEU A 256 N GLY A 236 SHEET 5 AA6 5 GLU A 284 ASP A 288 -1 O GLU A 284 N VAL A 265 SHEET 1 AA7 3 ALA A 187 GLU A 190 0 SHEET 2 AA7 3 LYS A 224 ILE A 227 -1 O LEU A 225 N MET A 189 SHEET 3 AA7 3 ILE A 218 ARG A 221 -1 N THR A 219 O MET A 226 SHEET 1 AA8 4 LEU A 271 THR A 274 0 SHEET 2 AA8 4 LYS A 338 VAL A 355 1 O GLN A 348 N VAL A 273 SHEET 3 AA8 4 GLY A 326 GLU A 333 -1 N ALA A 332 O ALA A 339 SHEET 4 AA8 4 THR A 292 LYS A 297 -1 N ARG A 294 O VAL A 331 SHEET 1 AA9 3 LEU A 271 THR A 274 0 SHEET 2 AA9 3 LYS A 338 VAL A 355 1 O GLN A 348 N VAL A 273 SHEET 3 AA9 3 GLU A 373 ASN A 377 -1 O THR A 375 N HIS A 352 SHEET 1 AB1 3 ALA A 279 PHE A 281 0 SHEET 2 AB1 3 LEU A 315 ILE A 317 -1 O LEU A 315 N PHE A 281 SHEET 3 AB1 3 TYR A 307 ILE A 309 -1 N GLU A 308 O LYS A 316 SHEET 1 AB2 4 GLN A 360 ALA A 363 0 SHEET 2 AB2 4 SER A 436 THR A 446 1 O TYR A 442 N GLN A 360 SHEET 3 AB2 4 GLY A 424 LEU A 431 -1 N THR A 430 O ILE A 437 SHEET 4 AB2 4 ALA A 381 ARG A 386 -1 N ARG A 385 O ILE A 427 SHEET 1 AB3 3 VAL A 368 PHE A 370 0 SHEET 2 AB3 3 LEU A 413 ILE A 415 -1 O ILE A 415 N VAL A 368 SHEET 3 AB3 3 PHE A 405 VAL A 407 -1 N SER A 406 O THR A 414 SSBOND 1 CYS A 89 CYS A 147 1555 1555 2.03 SSBOND 2 CYS A 191 CYS A 240 1555 1555 2.03 SSBOND 3 CYS A 283 CYS A 330 1555 1555 2.02 SSBOND 4 CYS A 372 CYS A 428 1555 1555 2.04 CISPEP 1 ARG A 94 PRO A 95 0 0.65 CISPEP 2 HIS A 197 PRO A 198 0 1.08 CISPEP 3 ASP A 288 PRO A 289 0 3.58 CISPEP 4 ASN A 377 PRO A 378 0 2.44 SITE 1 AC1 8 SER A 263 PHE A 264 ARG A 267 ARG A 286 SITE 2 AC1 8 SER A 402 ARG A 404 HOH A 608 HOH A 658 CRYST1 43.457 99.134 247.175 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004046 0.00000