HEADER HYDROLASE 18-AUG-17 5OT1 TITLE THE TYPE III PULLULAN HYDROLASE FROM THERMOCOCCUS KODAKARENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PULLULANASE TYPE II, GH13 FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 311400; SOURCE 4 GENE: TK0977; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THERMOSTABLE, TYPE III PULLULAN HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.GUO,A.R.COKER,S.P.WOOD,J.B.COOPER,R.KEEGAN,N.AHMAD,M.A.MUHAMMAD, AUTHOR 2 N.RASHID,M.AKHTAR REVDAT 3 17-JAN-24 5OT1 1 REMARK REVDAT 2 25-APR-18 5OT1 1 JRNL REVDAT 1 18-APR-18 5OT1 0 JRNL AUTH J.GUO,A.R.COKER,S.P.WOOD,J.B.COOPER,R.M.KEEGAN,N.AHMAD, JRNL AUTH 2 M.A.MUHAMMAD,N.RASHID,M.AKHTAR JRNL TITL STRUCTURE AND FUNCTION OF THE TYPE III PULLULAN HYDROLASE JRNL TITL 2 FROM THERMOCOCCUS KODAKARENSIS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 305 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29652257 JRNL DOI 10.1107/S2059798318001754 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11RC3_2553: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.360 REMARK 3 FREE R VALUE TEST SET COUNT : 909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 96.1690 - 5.0881 1.00 2735 165 0.2336 0.2401 REMARK 3 2 5.0881 - 4.0385 1.00 2660 158 0.2050 0.2238 REMARK 3 3 4.0385 - 3.5280 1.00 2658 157 0.2261 0.3020 REMARK 3 4 3.5280 - 3.2054 1.00 2685 144 0.2523 0.3344 REMARK 3 5 3.2054 - 2.9757 1.00 2654 142 0.2986 0.3279 REMARK 3 6 2.9757 - 2.8002 1.00 2659 143 0.3213 0.4017 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4747 REMARK 3 ANGLE : 0.621 6454 REMARK 3 CHIRALITY : 0.044 670 REMARK 3 PLANARITY : 0.004 837 REMARK 3 DIHEDRAL : 13.146 2747 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17039 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 96.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 2Z1K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CARBOXYLIC ACIDS, 0.1 M BUFFER REMARK 280 SYSTEM 1 PH 6.2, 21% (V/V) P500MME_P20K IN THE MORPHEUS KIT, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.32450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.94400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.32450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.94400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 902 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 ILE A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 ILE A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 SER A 15 REMARK 465 ILE A 16 REMARK 465 ALA A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 CYS A 20 REMARK 465 ILE A 21 REMARK 465 SER A 22 REMARK 465 GLU A 23 REMARK 465 SER A 24 REMARK 465 ASN A 25 REMARK 465 GLU A 26 REMARK 465 ASN A 27 REMARK 465 GLN A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 THR A 31 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 THR A 34 REMARK 465 VAL A 35 REMARK 465 PRO A 36 REMARK 465 PRO A 37 REMARK 465 THR A 38 REMARK 465 SER A 39 REMARK 465 VAL A 40 REMARK 465 THR A 41 REMARK 465 PRO A 42 REMARK 465 SER A 43 REMARK 465 GLN A 44 REMARK 465 SER A 45 REMARK 465 SER A 46 REMARK 465 THR A 47 REMARK 465 PRO A 48 REMARK 465 THR A 49 REMARK 465 THR A 50 REMARK 465 SER A 51 REMARK 465 THR A 52 REMARK 465 SER A 53 REMARK 465 THR A 54 REMARK 465 TYR A 55 REMARK 465 GLY A 56 REMARK 465 PRO A 57 REMARK 465 SER A 58 REMARK 465 GLU A 59 REMARK 465 ARG A 60 REMARK 465 THR A 61 REMARK 465 GLU A 62 REMARK 465 LEU A 63 REMARK 465 LYS A 64 REMARK 465 LEU A 65 REMARK 465 PRO A 66 REMARK 465 SER A 67 REMARK 465 VAL A 68 REMARK 465 ASN A 69 REMARK 465 TYR A 70 REMARK 465 THR A 71 REMARK 465 PRO A 72 REMARK 465 ILE A 73 REMARK 465 TYR A 74 REMARK 465 VAL A 75 REMARK 465 GLY A 76 REMARK 465 ILE A 77 REMARK 465 GLU A 78 REMARK 465 LYS A 79 REMARK 465 GLY A 80 REMARK 465 CYS A 81 REMARK 465 PRO A 82 REMARK 465 SER A 83 REMARK 465 GLY A 84 REMARK 465 ARG A 85 REMARK 465 VAL A 86 REMARK 465 PRO A 87 REMARK 465 VAL A 88 REMARK 465 LYS A 89 REMARK 465 PHE A 90 REMARK 465 THR A 91 REMARK 465 TYR A 92 REMARK 465 ASN A 93 REMARK 465 PRO A 94 REMARK 465 GLY A 95 REMARK 465 ASN A 96 REMARK 465 LYS A 97 REMARK 465 THR A 98 REMARK 465 VAL A 99 REMARK 465 LYS A 100 REMARK 465 SER A 101 REMARK 465 VAL A 102 REMARK 465 SER A 103 REMARK 465 LEU A 104 REMARK 465 ARG A 105 REMARK 465 GLY A 106 REMARK 465 SER A 107 REMARK 465 PHE A 108 REMARK 465 ASN A 109 REMARK 465 ASN A 110 REMARK 465 TRP A 111 REMARK 465 GLY A 112 REMARK 465 GLU A 113 REMARK 465 TRP A 114 REMARK 465 PRO A 115 REMARK 465 MET A 116 REMARK 465 GLU A 117 REMARK 465 LEU A 118 REMARK 465 LYS A 119 REMARK 465 ASN A 120 REMARK 465 GLY A 121 REMARK 465 THR A 122 REMARK 465 TRP A 123 REMARK 465 GLU A 124 REMARK 465 THR A 125 REMARK 465 THR A 126 REMARK 465 VAL A 127 REMARK 465 CYS A 128 REMARK 465 LEU A 129 REMARK 465 ARG A 130 REMARK 465 PRO A 131 REMARK 465 GLY A 132 REMARK 465 ARG A 133 REMARK 465 TYR A 134 REMARK 465 GLU A 135 REMARK 465 TYR A 136 REMARK 465 LYS A 137 REMARK 465 TYR A 138 REMARK 465 PHE A 139 REMARK 465 ILE A 140 REMARK 465 ASN A 141 REMARK 465 GLY A 142 REMARK 465 GLN A 143 REMARK 465 TRP A 144 REMARK 465 VAL A 145 REMARK 465 LYS A 146 REMARK 465 ASP A 147 REMARK 465 MET A 148 REMARK 465 SER A 149 REMARK 465 ASP A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 152 REMARK 465 THR A 153 REMARK 465 GLY A 154 REMARK 465 ARG A 155 REMARK 465 PRO A 156 REMARK 465 TYR A 157 REMARK 465 ASP A 158 REMARK 465 PRO A 159 REMARK 465 ASP A 160 REMARK 465 ALA A 161 REMARK 465 ASP A 162 REMARK 465 ALA A 163 REMARK 465 TYR A 164 REMARK 465 ALA A 165 REMARK 465 PRO A 166 REMARK 465 ASP A 167 REMARK 465 GLY A 168 REMARK 465 TYR A 169 REMARK 465 GLY A 170 REMARK 465 GLY A 171 REMARK 465 LYS A 172 REMARK 465 ASN A 173 REMARK 465 ALA A 174 REMARK 465 VAL A 175 REMARK 465 ARG A 176 REMARK 465 VAL A 177 REMARK 465 VAL A 178 REMARK 465 GLU A 179 REMARK 465 GLY A 180 REMARK 465 ARG A 181 REMARK 465 GLU A 182 REMARK 465 ALA A 183 REMARK 465 PHE A 184 REMARK 465 PRO A 740 REMARK 465 GLU A 741 REMARK 465 ASP A 742 REMARK 465 PHE A 743 REMARK 465 SER A 744 REMARK 465 PRO A 745 REMARK 465 GLU A 746 REMARK 465 LEU A 747 REMARK 465 GLY A 765 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 379 OD2 ASP A 384 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 223 72.81 49.56 REMARK 500 TRP A 234 -149.32 -133.27 REMARK 500 ASP A 259 42.97 -83.98 REMARK 500 THR A 268 -161.10 54.62 REMARK 500 SER A 269 -33.39 -134.39 REMARK 500 SER A 271 76.07 -153.91 REMARK 500 PHE A 282 77.56 -119.92 REMARK 500 PHE A 301 -68.02 -95.46 REMARK 500 HIS A 344 7.60 81.51 REMARK 500 ASP A 384 76.23 -114.06 REMARK 500 VAL A 420 78.17 -118.59 REMARK 500 CYS A 424 -160.58 -119.81 REMARK 500 GLU A 436 57.80 -118.30 REMARK 500 LYS A 437 -37.56 -156.67 REMARK 500 VAL A 504 73.08 29.90 REMARK 500 ARG A 547 -79.01 -126.44 REMARK 500 MET A 552 97.47 -63.91 REMARK 500 SER A 599 -158.85 -162.05 REMARK 500 HIS A 656 77.01 -100.79 REMARK 500 ASP A 658 63.64 62.27 REMARK 500 TYR A 698 -97.87 -100.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 951 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 952 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 953 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 954 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 955 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 956 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 957 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 958 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH A 960 DISTANCE = 8.36 ANGSTROMS REMARK 525 HOH A 961 DISTANCE = 9.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 303 OD1 REMARK 620 2 ASN A 305 O 85.9 REMARK 620 3 ASN A 308 OD1 156.5 70.9 REMARK 620 4 ASP A 309 OD1 95.9 87.5 87.4 REMARK 620 5 GLY A 348 O 81.2 162.3 120.3 106.0 REMARK 620 6 ASP A 350 OD2 80.5 68.2 86.9 155.5 97.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 801 DBREF 5OT1 A 1 765 UNP Q5JID9 Q5JID9_THEKO 1 765 SEQRES 1 A 765 MET LYS LYS GLY GLY LEU LEU LEU ILE LEU LEU ILE LEU SEQRES 2 A 765 VAL SER ILE ALA SER GLY CYS ILE SER GLU SER ASN GLU SEQRES 3 A 765 ASN GLN THR ALA THR ALA SER THR VAL PRO PRO THR SER SEQRES 4 A 765 VAL THR PRO SER GLN SER SER THR PRO THR THR SER THR SEQRES 5 A 765 SER THR TYR GLY PRO SER GLU ARG THR GLU LEU LYS LEU SEQRES 6 A 765 PRO SER VAL ASN TYR THR PRO ILE TYR VAL GLY ILE GLU SEQRES 7 A 765 LYS GLY CYS PRO SER GLY ARG VAL PRO VAL LYS PHE THR SEQRES 8 A 765 TYR ASN PRO GLY ASN LYS THR VAL LYS SER VAL SER LEU SEQRES 9 A 765 ARG GLY SER PHE ASN ASN TRP GLY GLU TRP PRO MET GLU SEQRES 10 A 765 LEU LYS ASN GLY THR TRP GLU THR THR VAL CYS LEU ARG SEQRES 11 A 765 PRO GLY ARG TYR GLU TYR LYS TYR PHE ILE ASN GLY GLN SEQRES 12 A 765 TRP VAL LYS ASP MET SER ASP ASP GLY THR GLY ARG PRO SEQRES 13 A 765 TYR ASP PRO ASP ALA ASP ALA TYR ALA PRO ASP GLY TYR SEQRES 14 A 765 GLY GLY LYS ASN ALA VAL ARG VAL VAL GLU GLY ARG GLU SEQRES 15 A 765 ALA PHE TYR VAL GLU PHE ASP PRO ARG ASP PRO ALA TYR SEQRES 16 A 765 LEU SER ILE ALA ASP LYS ARG THR VAL VAL ARG PHE GLU SEQRES 17 A 765 ALA LYS ARG ASP THR VAL GLU SER ALA VAL LEU VAL THR SEQRES 18 A 765 ASP HIS GLY ASN TYR THR MET LYS LEU GLN VAL TRP TRP SEQRES 19 A 765 ASP PHE GLY GLU THR TRP ARG ALA GLU MET PRO VAL GLU SEQRES 20 A 765 PRO ALA ASP TYR TYR ILE LEU VAL THR SER SER ASP GLY SEQRES 21 A 765 GLY LYS PHE ALA VAL LEU ASN THR SER GLU SER PRO PHE SEQRES 22 A 765 PHE HIS PHE ASP GLY VAL GLU GLY PHE PRO GLN LEU GLU SEQRES 23 A 765 TRP VAL SER ASN GLY ILE THR TYR GLN ILE PHE PRO ASP SEQRES 24 A 765 ARG PHE ASN ASN GLY ASN LYS SER ASN ASP ALA LEU ALA SEQRES 25 A 765 LEU ASP HIS ASP GLU LEU ILE LEU ASN GLN VAL ASN PRO SEQRES 26 A 765 GLY GLN PRO ILE LEU SER ASN TRP SER ASP PRO ILE THR SEQRES 27 A 765 PRO LEU HIS CYS CYS HIS GLN TYR PHE GLY GLY ASP ILE SEQRES 28 A 765 LYS GLY ILE THR GLU LYS LEU ASP TYR LEU GLN SER LEU SEQRES 29 A 765 GLY VAL THR ILE ILE TYR ILE ASN PRO ILE PHE LEU SER SEQRES 30 A 765 GLY SER ALA HIS GLY TYR ASP THR TYR ASP TYR TYR ARG SEQRES 31 A 765 LEU ASP PRO LYS PHE GLY THR GLU ASP GLU LEU ARG GLU SEQRES 32 A 765 PHE LEU ASP GLU ALA HIS ARG ARG GLY MET ARG VAL ILE SEQRES 33 A 765 PHE ASP PHE VAL PRO ASN HIS CYS GLY ILE GLY ASN PRO SEQRES 34 A 765 ALA PHE LEU ASP VAL TRP GLU LYS GLY ASN GLU SER PRO SEQRES 35 A 765 TYR TRP ASP TRP PHE PHE VAL LYS LYS TRP PRO PHE LYS SEQRES 36 A 765 LEU GLY ASP GLY SER ALA TYR VAL GLY TRP TRP GLY PHE SEQRES 37 A 765 GLY SER LEU PRO LYS LEU ASN THR ALA ASN GLN GLU VAL SEQRES 38 A 765 ARG GLU TYR LEU ILE GLY ALA ALA LEU HIS TRP ILE GLU SEQRES 39 A 765 PHE GLY PHE ASP GLY ILE ARG VAL ASP VAL PRO ASN GLU SEQRES 40 A 765 VAL LEU ASP PRO GLY THR PHE PHE PRO GLU LEU ARG LYS SEQRES 41 A 765 ALA VAL LYS GLU LYS LYS PRO ASP ALA TYR LEU VAL GLY SEQRES 42 A 765 GLU ILE TRP THR LEU SER PRO GLU TRP VAL LYS GLY ASP SEQRES 43 A 765 ARG PHE ASP SER LEU MET ASN TYR ALA LEU GLY ARG ASP SEQRES 44 A 765 ILE LEU LEU ASN TYR ALA LYS GLY LEU LEU SER GLY GLU SEQRES 45 A 765 SER ALA MET LYS MET MET GLY ARG TYR TYR ALA SER TYR SEQRES 46 A 765 GLY GLU ASN VAL VAL ALA MET GLY PHE ASN LEU VAL ASP SEQRES 47 A 765 SER HIS ASP THR SER ARG VAL LEU THR ASP LEU GLY GLY SEQRES 48 A 765 GLY LYS LEU GLY ASP THR PRO SER ASN GLU SER ILE GLN SEQRES 49 A 765 ARG LEU LYS LEU LEU SER THR LEU LEU TYR ALA LEU PRO SEQRES 50 A 765 GLY THR PRO VAL THR PHE GLN GLY ASP GLU ARG GLY LEU SEQRES 51 A 765 LEU GLY ASP LYS GLY HIS TYR ASP GLU GLN ARG TYR PRO SEQRES 52 A 765 ILE GLN TRP ASP THR VAL ASN GLU ASP VAL LEU ASN HIS SEQRES 53 A 765 TYR ARG ALA LEU ALA GLU LEU ARG LYS ARG VAL PRO ALA SEQRES 54 A 765 LEU ARG SER SER ALA MET ARG PHE TYR THR ALA LYS GLY SEQRES 55 A 765 GLY VAL MET ALA PHE PHE ARG GLY HIS HIS ASP GLU VAL SEQRES 56 A 765 LEU VAL VAL ALA ASN SER TRP LYS LYS PRO ALA LEU LEU SEQRES 57 A 765 GLU LEU PRO GLU GLY GLU TRP LYS VAL ILE TRP PRO GLU SEQRES 58 A 765 ASP PHE SER PRO GLU LEU LEU ARG GLY THR VAL GLU VAL SEQRES 59 A 765 PRO ALA ILE GLY ILE ILE ILE LEU GLU ARG GLY HET CA A 801 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *61(H2 O) HELIX 1 AA1 LEU A 285 ASN A 290 1 6 HELIX 2 AA2 PHE A 297 PHE A 301 5 5 HELIX 3 AA3 ASN A 305 LEU A 313 5 9 HELIX 4 AA4 ASP A 316 ASN A 321 1 6 HELIX 5 AA5 ASP A 350 GLU A 356 1 7 HELIX 6 AA6 LYS A 357 LEU A 364 1 8 HELIX 7 AA7 THR A 397 ARG A 411 1 15 HELIX 8 AA8 ASN A 428 GLU A 436 1 9 HELIX 9 AA9 LYS A 437 PHE A 447 5 11 HELIX 10 AB1 GLY A 464 PHE A 468 5 5 HELIX 11 AB2 ASN A 478 GLY A 496 1 19 HELIX 12 AB3 VAL A 504 VAL A 508 5 5 HELIX 13 AB4 ASP A 510 LYS A 526 1 17 HELIX 14 AB5 SER A 539 VAL A 543 5 5 HELIX 15 AB6 ASN A 553 ARG A 558 1 6 HELIX 16 AB7 ILE A 560 LYS A 566 1 7 HELIX 17 AB8 SER A 570 TYR A 585 1 16 HELIX 18 AB9 GLY A 586 MET A 592 1 7 HELIX 19 AC1 ARG A 604 LEU A 609 1 6 HELIX 20 AC2 SER A 619 TYR A 634 1 16 HELIX 21 AC3 GLY A 645 GLY A 649 5 5 HELIX 22 AC4 ASP A 658 TYR A 662 5 5 HELIX 23 AC5 ASN A 670 VAL A 687 1 18 HELIX 24 AC6 VAL A 687 SER A 692 1 6 SHEET 1 AA1 7 VAL A 186 GLU A 187 0 SHEET 2 AA1 7 ARG A 202 ALA A 209 -1 O GLU A 208 N GLU A 187 SHEET 3 AA1 7 GLU A 238 PRO A 245 -1 O MET A 244 N THR A 203 SHEET 4 AA1 7 GLY A 224 TRP A 233 -1 N LYS A 229 O ARG A 241 SHEET 5 AA1 7 VAL A 214 THR A 221 -1 N LEU A 219 O TYR A 226 SHEET 6 AA1 7 ALA A 249 SER A 257 -1 O TYR A 252 N VAL A 220 SHEET 7 AA1 7 PHE A 263 VAL A 265 -1 O VAL A 265 N ILE A 253 SHEET 1 AA2 7 LEU A 196 ALA A 199 0 SHEET 2 AA2 7 ARG A 202 ALA A 209 -1 O VAL A 204 N SER A 197 SHEET 3 AA2 7 GLU A 238 PRO A 245 -1 O MET A 244 N THR A 203 SHEET 4 AA2 7 GLY A 224 TRP A 233 -1 N LYS A 229 O ARG A 241 SHEET 5 AA2 7 VAL A 214 THR A 221 -1 N LEU A 219 O TYR A 226 SHEET 6 AA2 7 ALA A 249 SER A 257 -1 O TYR A 252 N VAL A 220 SHEET 7 AA2 7 PHE A 274 PHE A 276 -1 O PHE A 276 N ALA A 249 SHEET 1 AA3 8 SER A 550 LEU A 551 0 SHEET 2 AA3 8 TYR A 530 GLY A 533 1 O LEU A 531 N SER A 550 SHEET 3 AA3 8 GLY A 499 VAL A 502 1 N ILE A 500 O TYR A 530 SHEET 4 AA3 8 ARG A 414 PHE A 419 1 N PHE A 419 O ARG A 501 SHEET 5 AA3 8 VAL A 366 ILE A 371 1 N ILE A 369 O ILE A 416 SHEET 6 AA3 8 ILE A 292 ILE A 296 1 N ILE A 296 O TYR A 370 SHEET 7 AA3 8 THR A 639 PHE A 643 1 O THR A 642 N GLN A 295 SHEET 8 AA3 8 PHE A 594 ASN A 595 1 N ASN A 595 O VAL A 641 SHEET 1 AA4 2 ILE A 329 LEU A 330 0 SHEET 2 AA4 2 GLN A 345 TYR A 346 1 O TYR A 346 N ILE A 329 SHEET 1 AA5 2 PHE A 375 SER A 377 0 SHEET 2 AA5 2 THR A 385 LEU A 391 -1 O TYR A 386 N LEU A 376 SHEET 1 AA6 5 MET A 695 PHE A 697 0 SHEET 2 AA6 5 VAL A 704 ARG A 709 -1 O PHE A 708 N ARG A 696 SHEET 3 AA6 5 VAL A 715 ASN A 720 -1 O VAL A 717 N PHE A 707 SHEET 4 AA6 5 GLY A 758 GLU A 763 -1 O ILE A 760 N VAL A 718 SHEET 5 AA6 5 LYS A 736 VAL A 737 -1 N LYS A 736 O GLU A 763 SHEET 1 AA7 2 LEU A 728 GLU A 729 0 SHEET 2 AA7 2 THR A 751 VAL A 752 -1 O VAL A 752 N LEU A 728 LINK OD1 ASN A 303 CA CA A 801 1555 1555 2.30 LINK O ASN A 305 CA CA A 801 1555 1555 2.45 LINK OD1 ASN A 308 CA CA A 801 1555 1555 2.30 LINK OD1 ASP A 309 CA CA A 801 1555 1555 2.30 LINK O GLY A 348 CA CA A 801 1555 1555 2.51 LINK OD2 ASP A 350 CA CA A 801 1555 1555 2.45 CISPEP 1 TRP A 452 PRO A 453 0 1.39 SITE 1 AC1 6 ASN A 303 ASN A 305 ASN A 308 ASP A 309 SITE 2 AC1 6 GLY A 348 ASP A 350 CRYST1 192.649 63.888 56.122 90.00 93.80 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005191 0.000000 0.000345 0.00000 SCALE2 0.000000 0.015652 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017858 0.00000