HEADER HYDROLASE 22-AUG-17 5OTM TITLE CRYSTAL STRUCTURE OF HUMAN MTH1 IN COMPLEX WITH O6-METHYL-DGMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-HYDROXY-DATP DIPHOSPHATASE,8-OXO-DGTPASE,NUCLEOSIDE COMPND 5 DIPHOSPHATE-LINKED MOIETY X MOTIF 1,NUDIX MOTIF 1; COMPND 6 EC: 3.6.1.55,3.6.1.56; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT1, MTH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS MTH1, INHIBITOR, COMPLEX, HYDROLASE, NUDIX, METHYLATED NUCLEOTIDE, KEYWDS 2 O6-METHYL-DGMP EXPDTA X-RAY DIFFRACTION AUTHOR R.GUSTAFSSON,L.HENRIKSSON,A.-S.JEMTH,L.BRAUTIGAM,J.CARRERAS PUIGVERT, AUTHOR 2 E.HOMAN,U.WARPMAN BERGLUND,T.HELLEDAY,P.STENMARK REVDAT 5 17-JAN-24 5OTM 1 REMARK REVDAT 4 28-NOV-18 5OTM 1 JRNL REVDAT 3 24-OCT-18 5OTM 1 JRNL REVDAT 2 17-OCT-18 5OTM 1 JRNL REVDAT 1 05-SEP-18 5OTM 0 JRNL AUTH A.S.JEMTH,R.GUSTAFSSON,L.BRAUTIGAM,L.HENRIKSSON, JRNL AUTH 2 K.S.A.VALLIN,A.SARNO,I.ALMLOF,E.HOMAN,A.RASTI, JRNL AUTH 3 U.WARPMAN BERGLUND,P.STENMARK,T.HELLEDAY JRNL TITL MUTT HOMOLOGUE 1 (MTH1) CATALYZES THE HYDROLYSIS OF JRNL TITL 2 MUTAGENIC O6-METHYL-DGTP. JRNL REF NUCLEIC ACIDS RES. V. 46 10888 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30304478 JRNL DOI 10.1093/NAR/GKY896 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 28070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2007 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2552 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96000 REMARK 3 B22 (A**2) : -1.11000 REMARK 3 B33 (A**2) : 2.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.301 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2719 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2421 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3687 ; 1.326 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5626 ; 0.822 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 6.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;32.395 ;24.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;12.440 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;10.854 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2976 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 574 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1265 ; 0.208 ; 0.970 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1263 ; 0.207 ; 0.968 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1580 ; 0.357 ; 1.450 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1581 ; 0.357 ; 1.450 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1454 ; 0.313 ; 1.136 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1455 ; 0.313 ; 1.138 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2108 ; 0.485 ; 1.701 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2952 ; 5.260 ;12.356 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2905 ; 5.192 ;11.856 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0320 -11.7840 -12.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.0271 T22: 0.0414 REMARK 3 T33: 0.0535 T12: -0.0136 REMARK 3 T13: -0.0153 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 3.3375 L22: 2.5767 REMARK 3 L33: 1.7062 L12: -0.8048 REMARK 3 L13: -0.4612 L23: 2.0698 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.0697 S13: 0.1757 REMARK 3 S21: -0.1790 S22: 0.0078 S23: -0.0046 REMARK 3 S31: -0.1359 S32: -0.0276 S33: -0.0025 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8970 -12.0400 -5.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.1254 REMARK 3 T33: 0.1350 T12: -0.0533 REMARK 3 T13: 0.0454 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 3.8291 L22: 6.2472 REMARK 3 L33: 0.1443 L12: 0.2055 REMARK 3 L13: 0.6391 L23: 0.5023 REMARK 3 S TENSOR REMARK 3 S11: 0.1194 S12: -0.5801 S13: 0.0196 REMARK 3 S21: 0.4375 S22: -0.1755 S23: 0.4867 REMARK 3 S31: 0.0618 S32: -0.1155 S33: 0.0561 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8640 -0.4470 -16.0360 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.0734 REMARK 3 T33: 0.1903 T12: -0.0190 REMARK 3 T13: -0.0278 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 1.5521 L22: 5.3463 REMARK 3 L33: 16.7116 L12: 0.1598 REMARK 3 L13: -2.1007 L23: -8.7196 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.0857 S13: 0.0657 REMARK 3 S21: -0.0136 S22: 0.0596 S23: 0.1381 REMARK 3 S31: -0.0413 S32: -0.2974 S33: -0.0789 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1930 -19.1950 -9.8000 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.0295 REMARK 3 T33: 0.0641 T12: 0.0244 REMARK 3 T13: 0.0114 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 3.1134 L22: 3.7403 REMARK 3 L33: 0.5966 L12: 1.4099 REMARK 3 L13: 0.2214 L23: 0.8765 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: -0.1748 S13: -0.2342 REMARK 3 S21: 0.2207 S22: -0.0543 S23: -0.1422 REMARK 3 S31: 0.1813 S32: 0.0739 S33: 0.0659 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9070 -5.2920 -10.4590 REMARK 3 T TENSOR REMARK 3 T11: 0.0196 T22: 0.0235 REMARK 3 T33: 0.1618 T12: 0.0002 REMARK 3 T13: -0.0415 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 4.5534 L22: 4.0010 REMARK 3 L33: 6.7043 L12: 0.7567 REMARK 3 L13: -2.0254 L23: -1.1627 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: -0.2954 S13: -0.2021 REMARK 3 S21: 0.1404 S22: -0.0823 S23: -0.1984 REMARK 3 S31: 0.0799 S32: 0.2291 S33: 0.1682 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 18 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8160 8.6720 -7.0100 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0888 REMARK 3 T33: 0.1184 T12: 0.0083 REMARK 3 T13: 0.0000 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 5.9640 L22: 5.2525 REMARK 3 L33: 8.6126 L12: -1.6512 REMARK 3 L13: -0.7138 L23: 4.8822 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.4725 S13: -0.0484 REMARK 3 S21: 0.1719 S22: -0.1658 S23: 0.2835 REMARK 3 S31: 0.5117 S32: 0.0625 S33: 0.1923 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1520 13.5970 -7.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.0286 T22: 0.0923 REMARK 3 T33: 0.1862 T12: 0.0039 REMARK 3 T13: 0.0183 T23: -0.0899 REMARK 3 L TENSOR REMARK 3 L11: 6.5206 L22: 3.5363 REMARK 3 L33: 0.4833 L12: -1.3516 REMARK 3 L13: 1.7643 L23: -0.2831 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.0835 S13: 0.5506 REMARK 3 S21: -0.1133 S22: -0.2030 S23: -0.2534 REMARK 3 S31: 0.0240 S32: -0.0117 S33: 0.1187 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 63 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2440 4.2240 -12.6720 REMARK 3 T TENSOR REMARK 3 T11: 0.0261 T22: 0.0623 REMARK 3 T33: 0.1952 T12: 0.0030 REMARK 3 T13: 0.0154 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 5.4788 L22: 3.7498 REMARK 3 L33: 13.6381 L12: 1.0680 REMARK 3 L13: 4.3009 L23: 2.1217 REMARK 3 S TENSOR REMARK 3 S11: 0.1581 S12: 0.1164 S13: -0.0084 REMARK 3 S21: -0.1555 S22: -0.0546 S23: -0.1608 REMARK 3 S31: 0.3196 S32: 0.3322 S33: -0.1035 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0320 19.9890 -4.8220 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0943 REMARK 3 T33: 0.3924 T12: -0.0035 REMARK 3 T13: 0.0136 T23: -0.1687 REMARK 3 L TENSOR REMARK 3 L11: 5.2974 L22: 2.0907 REMARK 3 L33: 2.3277 L12: 0.6924 REMARK 3 L13: 1.1161 L23: 1.2082 REMARK 3 S TENSOR REMARK 3 S11: -0.0853 S12: -0.6457 S13: 1.0265 REMARK 3 S21: -0.0093 S22: -0.0193 S23: -0.0227 REMARK 3 S31: -0.1499 S32: -0.0057 S33: 0.1046 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 156 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6000 5.2470 -11.4980 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: 0.0127 REMARK 3 T33: 0.0976 T12: -0.0049 REMARK 3 T13: -0.0006 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 5.5219 L22: 2.8874 REMARK 3 L33: 5.4350 L12: 0.4245 REMARK 3 L13: 0.1897 L23: -0.9884 REMARK 3 S TENSOR REMARK 3 S11: 0.2106 S12: -0.2317 S13: 0.1686 REMARK 3 S21: -0.0469 S22: -0.0937 S23: 0.1300 REMARK 3 S31: 0.1994 S32: 0.0840 S33: -0.1169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZR1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% W/V PEG6000, 0.1 M SODIUM ACETATE REMARK 280 TRIHYDRATE PH 3.7, 0.2 M LISO4, 3 MM O6-METHYL-2'-DGTP, 2 MM REMARK 280 TCEP, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.79050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.51250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.61850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.51250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.79050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.61850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 89 -61.85 -105.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6OG A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6OG B 205 DBREF 5OTM A 1 156 UNP P36639 8ODP_HUMAN 42 197 DBREF 5OTM B 1 156 UNP P36639 8ODP_HUMAN 42 197 SEQADV 5OTM GLY A -2 UNP P36639 EXPRESSION TAG SEQADV 5OTM SER A -1 UNP P36639 EXPRESSION TAG SEQADV 5OTM HIS A 0 UNP P36639 EXPRESSION TAG SEQADV 5OTM GLY B -2 UNP P36639 EXPRESSION TAG SEQADV 5OTM SER B -1 UNP P36639 EXPRESSION TAG SEQADV 5OTM HIS B 0 UNP P36639 EXPRESSION TAG SEQRES 1 A 159 GLY SER HIS MET GLY ALA SER ARG LEU TYR THR LEU VAL SEQRES 2 A 159 LEU VAL LEU GLN PRO GLN ARG VAL LEU LEU GLY MET LYS SEQRES 3 A 159 LYS ARG GLY PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY SEQRES 4 A 159 GLY LYS VAL GLN GLU GLY GLU THR ILE GLU ASP GLY ALA SEQRES 5 A 159 ARG ARG GLU LEU GLN GLU GLU SER GLY LEU THR VAL ASP SEQRES 6 A 159 ALA LEU HIS LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL SEQRES 7 A 159 GLY GLU PRO GLU LEU MET ASP VAL HIS VAL PHE CYS THR SEQRES 8 A 159 ASP SER ILE GLN GLY THR PRO VAL GLU SER ASP GLU MET SEQRES 9 A 159 ARG PRO CYS TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS SEQRES 10 A 159 ASP MET TRP PRO ASP ASP SER TYR TRP PHE PRO LEU LEU SEQRES 11 A 159 LEU GLN LYS LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN SEQRES 12 A 159 GLY GLN ASP THR ILE LEU ASP TYR THR LEU ARG GLU VAL SEQRES 13 A 159 ASP THR VAL SEQRES 1 B 159 GLY SER HIS MET GLY ALA SER ARG LEU TYR THR LEU VAL SEQRES 2 B 159 LEU VAL LEU GLN PRO GLN ARG VAL LEU LEU GLY MET LYS SEQRES 3 B 159 LYS ARG GLY PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY SEQRES 4 B 159 GLY LYS VAL GLN GLU GLY GLU THR ILE GLU ASP GLY ALA SEQRES 5 B 159 ARG ARG GLU LEU GLN GLU GLU SER GLY LEU THR VAL ASP SEQRES 6 B 159 ALA LEU HIS LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL SEQRES 7 B 159 GLY GLU PRO GLU LEU MET ASP VAL HIS VAL PHE CYS THR SEQRES 8 B 159 ASP SER ILE GLN GLY THR PRO VAL GLU SER ASP GLU MET SEQRES 9 B 159 ARG PRO CYS TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS SEQRES 10 B 159 ASP MET TRP PRO ASP ASP SER TYR TRP PHE PRO LEU LEU SEQRES 11 B 159 LEU GLN LYS LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN SEQRES 12 B 159 GLY GLN ASP THR ILE LEU ASP TYR THR LEU ARG GLU VAL SEQRES 13 B 159 ASP THR VAL HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET ACT A 205 4 HET 6OG A 206 24 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET 6OG B 205 24 HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM 6OG 6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 SO4 8(O4 S 2-) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 6OG 2(C11 H16 N5 O7 P) FORMUL 14 HOH *242(H2 O) HELIX 1 AA1 THR A 44 GLY A 58 1 15 HELIX 2 AA2 PRO A 112 MET A 116 5 5 HELIX 3 AA3 ASP A 119 GLN A 129 1 11 HELIX 4 AA4 THR B 44 GLY B 58 1 15 HELIX 5 AA5 ASP B 109 ILE B 111 5 3 HELIX 6 AA6 PRO B 112 MET B 116 5 5 HELIX 7 AA7 ASP B 119 GLN B 129 1 11 SHEET 1 A 6 PHE A 35 LYS A 38 0 SHEET 2 A 6 SER A 4 VAL A 12 -1 SHEET 3 A 6 LEU A 80 THR A 88 1 SHEET 4 A 6 HIS A 65 PHE A 74 -1 SHEET 5 A 6 PHE A 133 GLN A 140 1 SHEET 6 A 6 THR A 144 GLU A 152 -1 SHEET 1 B 2 ARG A 17 LYS A 23 0 SHEET 2 B 2 MET A 101 GLN A 107 -1 SHEET 1 C 6 PHE B 35 LYS B 38 0 SHEET 2 C 6 SER B 4 VAL B 12 -1 SHEET 3 C 6 LEU B 80 THR B 88 1 SHEET 4 C 6 HIS B 65 PHE B 74 -1 SHEET 5 C 6 LYS B 132 GLN B 140 1 SHEET 6 C 6 THR B 144 VAL B 153 -1 SHEET 1 D 2 ARG B 17 LYS B 23 0 SHEET 2 D 2 MET B 101 GLN B 107 -1 SITE 1 AC1 7 ALA A 63 HIS A 65 THR A 88 ASP A 89 SITE 2 AC1 7 SER A 90 HOH A 310 HOH A 372 SITE 1 AC2 7 ARG A 151 VAL A 153 ASP A 154 THR A 155 SITE 2 AC2 7 HOH A 337 VAL B 96 GLU B 97 SITE 1 AC3 5 HIS A 134 ARG A 151 HOH A 326 HOH A 346 SITE 2 AC3 5 THR B 94 SITE 1 AC4 4 HIS A 65 LYS A 66 HOH A 317 HOH A 328 SITE 1 AC5 6 GLU A 97 LYS A 138 ASP A 147 LEU B 146 SITE 2 AC5 6 ASP B 147 TYR B 148 SITE 1 AC6 21 THR A 8 LEU A 9 LYS A 23 PHE A 27 SITE 2 AC6 21 ASN A 33 GLY A 36 GLY A 37 PHE A 72 SITE 3 AC6 21 PHE A 74 MET A 81 TRP A 117 ASP A 119 SITE 4 AC6 21 ASP A 120 PHE A 139 HOH A 307 HOH A 315 SITE 5 AC6 21 HOH A 320 HOH A 344 HOH A 347 HOH A 354 SITE 6 AC6 21 HOH A 379 SITE 1 AC7 5 GLN A 142 HIS B 65 THR B 88 ASP B 89 SITE 2 AC7 5 SER B 90 SITE 1 AC8 2 HIS B 65 LYS B 66 SITE 1 AC9 6 ILE A 91 ARG B 151 VAL B 153 ASP B 154 SITE 2 AC9 6 THR B 155 HOH B 313 SITE 1 AD1 4 TYR A 148 HOH A 357 HIS B 134 ARG B 151 SITE 1 AD2 19 THR B 8 LEU B 9 LYS B 23 PHE B 27 SITE 2 AD2 19 ASN B 33 GLY B 36 GLY B 37 PHE B 72 SITE 3 AD2 19 PHE B 74 MET B 81 TRP B 117 ASP B 119 SITE 4 AD2 19 ASP B 120 HOH B 307 HOH B 330 HOH B 334 SITE 5 AD2 19 HOH B 357 HOH B 362 HOH B 372 CRYST1 59.581 67.237 79.025 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012654 0.00000